These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1138 fasta sequence [AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACAAATAATGAAAGAATACCAAAAGCTTCGTGGTCTTAAAGCGGTTGATGCGGAAACTGAACTTCTCCGACGGGCATCACAGTTGCCGACTTATGGGATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACCAGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAAATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAACCATACTGGACGAAAATTGTTCCGGACAAAATATATTCTGCATTCATTTCGGTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATACAAAATGCCTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAACCCTACTACTAATATCTTCAGTCCAAGCCCGCCTTATTNATTTATTGGACGGGCACAACAAGAACTTCGAACCTCGCCCTGGATCTTTT] [-] EMBL CD155992 [AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCG ] [-] EMBL CD155981 [AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCG ] [+] EMBL CD153764 [ ACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACAAATAATGAAAGAATACCAAAAGCTTCGTGGTCTTAAAGCGGTTGATGCGGAAACTGAACTTCTCCGACGGGCATCACAGTTGCCGACTTATGGGATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGANAGCANAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTA ] [+] EMBL CD171247 [ AACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCANAAGCTTCGTGGTCTTAAAGCGGTTGATGC ] [+] EMBL CD127480 [ TCTCCGACGGGCATCACAGTTGCCGACTTATGGGATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACCAGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAAATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAACCATACTGGACGAAAATTGTTCCGGACAAAATATATTCTGCATTCATTTCGGTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATACAAAATGCCTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAACCCTACTACTAATATCTTCAGTCCAAGCCCGCCTTATTNATTTATTGGACGGGCACAACAAGAACTTCGAACCTCGCCCTGGATCTTTT] [+] EMBL CD069549 [ ctccCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACCAGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAAATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAACCATACTGGACGAAAATTGTTCCGGACAAAATATATTCTGCATTCATTTCGTTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCTTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATATC ] consensusID : consensus_9579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 766 fasta sequence [ACTAAAGAGTCCTCAAAGAAACGGAGAACAGATGACCCCGAAAACAGGGACAGCGAAAAAGTTCCACATTCCAACTCCATAACTGATGACTCAATCCATTGTAAAGTCAGGTTACTTGATGATACCCAAACTCCTATTGAGTTTACAATAAAGAAAGCTGACAGTGGTTCGGTTCTTTTTAAAAAAGTGTGTCAGTCCATAGGCGACTTAGTTGAATACGACTATTTCGGGTTGAGATATACCGACCAAGATAATATACGGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATAACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCAAAAGCTTCGGTAATTTGCTTTTT] [+] EMBL CD066355 [ACTAAAGAGTCCTCAAAGAAACGGAGAACAGATGACCCCGAAAACAGGGACAGCGAAAAAGTTCCACATTCCAACTCCATAACTGATGACTCAATCCATTGTAAAGTCAGGTTACTTGATGATACCCAAACTCCTATTGAGTTTACAATAAAGAAAGCTGACAGTGGTTCGGTTCTTTTTAAAAAAGTGTGTCAGTCCATAGGCGACTTAGTTGAATACGACTATTTCGGGTTGAGATATACCGACCAAGATAATATACGGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGG ] [+] EMBL CD112701 [ GTTGAGATATACCGACAAAGATAATATACGGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGCGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATAACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAAT ] [+] EMBL CD171294 [ AACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCAAAAGCTTCGGTAATTTGCTTTTT] consensusID : consensus_9579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [AGCATTTTCAGACATACCAATAAACAAAATATATTCTGCATTCATTTCGTTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCTTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATATCTTCAGTCGAAGCCACGCTTATC] [-] EMBL CD199898 [AGCATTTTCAGACATACCAATAAACAAAATATATTCTGCATTCATTTCGTTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCTTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATATCTTCAGTCGAAGCCACGCTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9579#0 AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGAT 60 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 AAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAA 120 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 CATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATAT 180 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 CTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGA 240 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 GAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAA 300 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 ACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGT 360 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 GTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAA 420 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 GGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTC 480 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 AACCAAACGCCGGAGGTTGAAGCACAAATAATGAAAGAATACCAAAAGCTTCGTGGTCTT 540 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 AAAGCGGTTGATGCGGAAACTGAACTTCTCCGACGGGCATCACAGTTGCCGACTTATGGG 600 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 ATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCA 660 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 ACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTC 720 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 ACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACC 780 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 AGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAA 840 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ------------------------------------------------------------ consensus_9579#0 ATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAAC 900 consensus_9579#2 ----------------------------------------------------------AG 2 consensus_9579#1 ----------------ACTAAAGAGTCCTCAAAGAAACGGAGAACAGATGACCCCGAAAA 44 * consensus_9579#0 CATACTGGAC-GAAAATTGTTCCGGACAAAATATATT-CTGC--ATTCATTTCGGTGTAA 956 consensus_9579#2 CATTTT---C-AGACATACCAATAAACAAAATATATT-CTGC--ATTCATTTCGTTGTAA 55 consensus_9579#1 CAGGGACAGCGAAAAAGTTCCACATTCCAACTCCATAACTGATGACTCAATCCATTGTAA 104 ** * * * * ** * ** *** * *** * * ***** consensus_9579#0 ATCTAAA--ACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATACAAAATGCC----- 1009 consensus_9579#2 ATCTAAA--ACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCT----- 108 consensus_9579#1 AGTCAGGTTACTTGATGATACCCAAACTCCTATTGAGTTTACAATAAAGAAAGCTGACAG 164 * * *** * ** * * **** *** *** * ** ** consensus_9579#0 ----TC--TTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAACCCTACTACTAATA 1063 consensus_9579#2 ----TC--TTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATA 162 consensus_9579#1 TGGTTCGGTTCTTTTTAAAAAAGTGTGTCAGTCCATAGGCGACTTAGTTGAATACGACTA 224 ** *** ******* * * ** ** * * * *** * ** consensus_9579#0 TCTTCAGTCCAAGCCCGCCTTATTNATTTATTGGACGGGCACAACAAGAACTTCGAACCT 1123 consensus_9579#2 TCTTCAGTCGAAGCCACGCTTATC------------------------------------ 186 consensus_9579#1 TTTCGGGTTGA-GATATACCGACCAAGATAATATACGGCAATGGCTAGAGTTAGATAAAA 283 * * ** * * * * consensus_9579#0 CGCCCTGGATCTTTT--------------------------------------------- 1138 consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 GTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATT 343 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 ATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTC 403 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 AAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAAC 463 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 TTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACAC 523 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 CAAATAGTGATGTTAATCACTGTACACCACCTCTATATAACTCACGGTTGGATAGTGTGG 583 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 AGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAG 643 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 AGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACC 703 consensus_9579#0 ------------------------------------------------------------ consensus_9579#2 ------------------------------------------------------------ consensus_9579#1 AAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCAAAAGCTTCGGTAATTTGCTT 763 consensus_9579#0 --- consensus_9579#2 --- consensus_9579#1 TTT 766 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||