These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [GGCACCACACATTCTACAACGAGTTGCGAGTTGGCTCCAGAGGNCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTNNNNNNNNNNNNGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGNNNNNNNNCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTTCGAGCAGGAGATGGGTACTGCAGCTTCGAGTTCTGCATTGGAGAAGAGTTACGAACTTCCAGATGGTCAAGTTATCACGATTGGTAATGAGCGATAGCTTTTTGGGAATGGAAGCATCGGGAATTCATGAGACTACATACAATTCGATTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGGTGGAAGTACGATGTATCCTGGTATTGCTGAC] [+] EMBL CD080892 [GGCACCACACATTCTACAACGAGTTGCGAGTTGGCTCCAGAGGNCCACTGAACCCGAAAGCCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATGTTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGGTCGTACAACTGGTATAGTGTTGGACTNNNNNNNNNNNNGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTCATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCTTGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGNNNNNNNNCGAGATATAAAGGAGAAGCTTTGTTACGTTGCTTTGGATTTCGAGCAGGAGATGGGTACTGCAGCTTCGAGTTCTGCATTGGAGAAGAGTTACGAACTTCCAGATGGTCAAGTTATCACGATTGGTAATGAGCGATAGCTTTTTGGGAATGGAAGCATCGGGAATTCATGAGACTACATACAATTCGATTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGGTGGAAGTACGATGTATCCTGGTATTGCTGAC] consensusID : consensus_959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTTTTCCAACCTAGCTTTTGGGGATTGGAAGCATCGGGAATCATGAGACTACATACAATCGATTATGAAAGTGTGATGTGGATATCGTAAAAGATCTGTATTCGAACACCGTGTTGTCTGGTTGGAAGTACGATGTATCCTGGTATTGCTGACCGTATGCAGAAGGAGATTAGTGCTCTAGCCCCCAGTACAATGAAGATAAAGATCGTTGCACCACCTGAACGGAAGTACTCAGTATGGATTGGTGGTTCTATTTTGGCTTCATTATCAACATTCCAACAGATGTGGATTTCTAAACAGGAGTATGATGAATCTGGTCCCGGTATTGTTCATCGCAAATGCTTTTAGTTTTTGTGTGTAATAAATAGATCCTTTAATTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395186 [TTTTTCCAACCTAGCTTTTGGGGATTGGAAGCATCGGGAATCATGAGACTACATACAATCGATTATGAAAGTGTGATGTGGATATCGTAAAAGATCTGTATTCGAACACCGTGTTGTCTGGTTGGAAGTACGATGTATCCTGGTATTGCTGACCGTATGCAGAAGGAGATTAGTGCTCTAGCCCCCAGTACAATGAAGATAAAGATCGTTGCACCACCTGAACGGAAGTACTCAGTATGGATTGGTGGTTCTATTTTGGCTTCATTATCAACATTCCAACAGATGTGGATTTCTAAACAGGAGTATGATGAATCTGGTCCCGGTATTGTTCATCGCAAATGCTTTTAGTTTTTGTGTGTAATAAATAGATCCTTTAATTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_959#0 GGCACCACACATTCTACAACGAGTTGCGAGTTGGCTCCAGAGGNCCACTGAACCCGAAAG 60 consensus_959#1 ------------------------------------------------------------ consensus_959#0 CCAATCGTGAGAAGATGACACAGATCATGTTTGAGACGTTTAATGTGCCAGCTATGTATG 120 consensus_959#1 ----------------------------------------------------------TT 2 * consensus_959#0 TTGCTATTCAGGCGGTGTTGTCACTGTATGCATCTGG--TCGTACAACTGGTATAGTGTT 178 consensus_959#1 TTTCCAACCTAGCTTT-TGGGGATTGGAAGCATCGGGAATCATGAGACTA-CATACAATC 60 ** * * * ** * * * * ** * ***** ** ** * *** *** * consensus_959#0 GGACTNNNNNNNNNNNNGTGACCCACACAGTTCCGATCTATGAAGGTTATGCATTGCCTC 238 consensus_959#1 GATTATGAAAGTGTGATGTGGATATCGTAAA--AGATCTGTAT---TCGAACACCGTGTT 115 * *** * * ***** * * ** * * consensus_959#0 ATGCGATTTTGCGTCTGGACCTTGCTGGTAGAGATCTTACCGACTATATGATGAAGATCT 298 consensus_959#1 GTCTGGTTGGAAGTACGATGTATCCTGGTA------TTGCTGACCGTATGCAGAAGGAGA 169 * * ** ** * * ****** ** * *** **** **** consensus_959#0 TGACTGAGAGAGGTTACAGTTTTACTACTACTGCAGAACGTGNNNNNNNNCGAGATATAA 358 consensus_959#1 TTAGTGCTCTAGCCCCCAGTACAATGAAGA-TAAAGATCGTTGCACCACCTGA-ACGGAA 227 * * ** ** **** * * * * *** *** ** * ** consensus_959#0 AGGAGAAGCTTTGTTACGTTGCTTTGGATTTCGAGCAGGAGATGGGTACTGCAGCTTCGA 418 consensus_959#1 GTACTCAGTATGGATTGGTGGTTCT--ATTTTGGCTTCATTATCAACATTCCAACA--GA 283 ** * * * ** * * * **** * ** * * ** * ** consensus_959#0 GTTCTGCATTGGAGAAGAGTTACGAACTTCCAGATGGTCAAGTTATCACGATTGGTAATG 478 consensus_959#1 TGTGGATTTCTAAACAGGAGTATGA---TGAATCTGGTCCCGGTATTGTTCATCGCAAAT 340 * * * ** ** ** * * ***** * *** * * ** consensus_959#0 AGCGATAGCTTTT-TGGG-AATGGAAGCATCGGGAATTCATGAGACTACATACAATTCGA 536 consensus_959#1 GCTTTTAGTTTTTGTGTGTAATAAATAGATCCTTTAATTAAAAAAAAAAAAAAAAAAAAA 400 *** **** ** * *** * *** * * * * * * * * ** * consensus_959#0 TTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGGTG 596 consensus_959#1 AAA--------------------------------------------------------- 403 * consensus_959#0 GAAGTACGATGTATCCTGGTATTGCTGAC 625 consensus_959#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||