|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 828 fasta sequence
[GCCAANACTCTTGGCACGAGGACGTCGCTGGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTC-AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGNTCAAGCAAAATTAAAATCTGATTACTAACTTTGTACAAAAA-T-AATACAAATATCTTGTAAATAAAAGAATTTATT]
[+] EMBL CD080699 [GCCAANACTCTTGGCACGAGGACGTCGCTGGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTC AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACANAATGACGATGATGATGATGAGTATCAGCTGGAATTCG AACTAGTATCAAT ATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAAGTGCTCGTCGTCTTGGTACGCTTGNTCAAGCAAAATT AAATCTGATTACTAACTTTGTACAAAAA T AATACAAATATCTTGTAAATAAAAGAATTat ]
[-] EMBL CD146750 [ GGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAACCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTCTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTCAAAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGA ]
[-] EMBL CD074624 [ TTCTGCGTATTCCTCCTAGTCTTATTAAACGTC AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGTTCAAGCAAAATTAAAATCTGATTACTAACTTTGTACAAAAA TAAATACAAATATCTTGTAAATAAAAGAATTTATT]
[-] EMBL CD132168 [ CTAGTCTTATTAAACGTC AAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTT ]
[-] EMBL AI975552 [ AGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTAAATACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGCATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGTTTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGTTCAAGCAAAATTAAAATCTGATTACTAACTTTGTACAAAAA TAAATACAAATATCTTGTAAATAAAAGAATTTATT]
[-] EMBL SMT14515 [ CTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGCGAAGCCAGNTGGTCAGCTGATCAANAAAATGACGATGATGATGATGAGTATCAGCTGGAATTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCNCGTAACCGCATCGCTCGTTTATTGCANCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGNTCAAGGAAAATTAAAATCTGATTACTAACTTTGTANAAAAANA AANANAAATAT ]
consensusID : consensus_9602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 618 fasta sequence
[AACTTACCTCCAAGAGATGTCAATCTACATGTATCCGGCTATTGCTGCCCCCGAAAGGCATTCTGTTGATTATGTTTCTCAGGGTCAGCCAGAGGGTCCAAGCATTCAGCAAGGCTCTGCCGTTGTTCCTGGAGAAATAGTTTTTTCTTCTGTCGCAAGTCTTATAACTGGCCATGGAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGATGAGGATTTATCTTCCGCAGTTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGGTACAGGCAGGCAATATACACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAAGGCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAACAACGTCGCTGGCGTGCTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGG]
[-] EMBL CD157217 [AACTTACCTCCAAGAGATGTCAATCTACATGTATCCGGCTATTGCTGCCCCCGAAAGGCATTCTGTTGATTATGTTTCTCAGGGTCAGCCAGAGGGTCCAAGCATTCAGCAAGGCTCTGCCGTTGTTCCTGGAGAAATAGTTTTTTCTTCTGTCGCAAGTCTTATAACTGGCCATGGAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGATGAGGATTTATCTTCCGCAGTTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGGTACAGGCAGGCAATATACACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAAGGCCCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAACAGCGTCGC ]
[-] EMBL CD189640 [ TTATAACTGGCCATGGAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGGTGAGGATTTATCTTCCGCAGTTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGATACAGGCAGGCAATATACACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAAGGCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAACAACGTCGCTGGCGTGCTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCGTTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGG]
[+] EMBL SMT14516 [ CTNTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGAA GCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGNCCGCATTGTAGAGGTTGANCAACGTCGCTGGCGTGTTGATGTCAACTCTNCTCTNCTAGCCAATCTAG ]
consensusID : consensus_9602#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[GAGGTTTATCGAAGCTAGAGACATTTGACTAGAAGTACTACTACTATATATATTATATTGAAAATTAGGTAACTGAAGTCTTTAATAGACATTGTGTTTCAGCAACTTTTTAACTCATCAGTGTGTATTCATAGTATTGATTTTTACGTTGGTATTTTTCGATACATCTTTGCGTTTTTTCAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTCAAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTTA]
[+] EMBL CD083557 [GAGGTTTATCGAAGCTAGAGACATTTGACTAGAAGTACTACTACTATATATATTATATTGAAAATTAGGTAACTGAAGTCTTTAATAGACATTGTGTTTCAGCAACTTTTTAACTCATCAGTGTGTATTCATAGTATTGATTTTTACGTTGGTATTTTTCGATACATCTTTGCGTTTTTTCAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGGAACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGCTGTCTTCTGCGTATTCCTCCTAGTCTTATTAAACGTCAAAAAATACATCGTCATCGTCTAGCGATCCCAAGAATGGATACACTTGATGGTCCTATAACAATATCTAATGAAGTTATTTCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAGCAAGAGCTATGGATATTGGTCTTGGCTTATCGGCTCCAGTTGAAGCAGATTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9602#0 ----------------------------------GCCAANACTCTTGGCAC-GAGGACGT 25
consensus_9602#2 ----GAGGTTTATCGAAGCTAGAGACATTTGACTAGAAGTACTACTACTAT-ATATATTA 55
consensus_9602#1 AACTTACCTCCAAGAGATGTCAATCTACATGTATCCGGCTATTGCTGCCCCCGAAAGGCA 60
* * *
consensus_9602#0 CGCTGGCGTGTTGATGTCAACTCTGCTCTTCTAGCCAATCTAGCCTTGGCTAATGTGAAA 85
consensus_9602#2 TATTGAAAATTAGGTAACTGAAGT-CTTTAATAGACATTGT-GTTTCAGCAACTTTTTAA 113
consensus_9602#1 TTCTGTTGATTATGTTTCTCAGGGTCAGCCAGAGGGTCCAAGCATTCAGCAAGGCTCTG- 119
** * * * * ** * ** * *
consensus_9602#0 CTACCTGGTG-GTGAACTTCGTCGGAAATCTGAAGATGATGAA---CGGGCTATGCGTTC 141
consensus_9602#2 CTCATCAGTGTGTATTCATAGTATTGATTTTTACGTTGGTATTTTTCGATACATCTTTGC 173
consensus_9602#1 CCGTTGTTCCTGGAGAAATAGTTTT--TTCTTCTGTCGCAAGTCTTATAACTGGCCATG- 176
* * * ** * * * * *
consensus_9602#0 TTTCATGAAGGAGGGTGACCTCATTGTCGCTGAA-GTTCATGAAG------TTTACAAAG 194
consensus_9602#2 GTTTTTTCAGGAGGGTGACCTCATTGTCGCTGAA-GTTCATGAAG------TTTACAAAG 226
consensus_9602#1 GAACCTATAGGAGTGTAGATGCTTCGTCTACGAACATTGATGAGGATTTATCTTCCGCAG 236
* ***** ** * * *** *** ** **** * ** * **
consensus_9602#0 ATGG----AACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGC 250
consensus_9602#2 ATGG----AACATTACAACTTCATATGCCGGGTACCAGGACAGGCAAACTGGGAGGTGGC 282
consensus_9602#1 TTAATCCAGACACTTTGGCATCTGTTAATGGAGATCCAGGGGTACAGGCAGGCAATATAC 296
* *** * * ** * ** * * * ** * ** * *
consensus_9602#0 TGTCTTCTGCG--TATTCCTCCTAGTCTTATTAA-ACGTCAAAAAATACATCGTCATCG- 306
consensus_9602#2 TGTCTTCTGCG--TATTCCTCCTAGTCTTATTAA-ACGTCAAAAAATACATCGTCATCG- 338
consensus_9602#1 ACACTTCTCTAACTGGGCGTGTTAGGATAGTCAATAAACTCGTATATGTAGAGCCACCGA 356
***** * * * *** * * ** * * ** * * ** **
consensus_9602#0 ---TCTAGCGATCC--CAAGAATGGATACACT-TGATGGTCC-TATAACA-ATATCTAAT 358
consensus_9602#2 ---TCTAGCGATCC--CAAGAATGGATACACT-TGATGGTCC-TATAACA-ATATCTAAT 390
consensus_9602#1 AGGCTCGGTACTTTGGCAATGTTGGAGATACTGTAGTGGGCCGCATTGTAGAGGTTGAAC 416
* * *** **** * *** * *** ** ** * * * **
consensus_9602#0 GAAGTTATT--TCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAG 416
consensus_9602#2 GAAGTTATT--TCTGTTGGCCTCATACTTGGCTGTAATGGATATATTTGGACAGGTCCAG 448
consensus_9602#1 AACGTCGCTGGCGTGCTGATGTCA-ACTCTGCTCTTCTAGCCA-ATCTAGCCTTGGCTAA 474
* ** * ** ** *** *** *** * * * * ** * * * * * *
consensus_9602#0 CAAGAG-CTATG-GATATTGGTCTTGGCTTATCGGCTCCAGTTGA--AGCAGATTTAAAT 472
consensus_9602#2 CAAGAG-CTATG-GATATTGGTCTTGGCTTATCGGCTCCAGTTGA--AGCAGATTTTA-- 502
consensus_9602#1 TGTGAAACTACCTGGTGGTGAACTTCGTCGGAAATCTGAAGATGATGAACGGGCTATGCG 534
** *** * * ** *** * ** ** *** * * * *
consensus_9602#0 ACAGCTAATGAATCGGAATTATTAGCTGAACGCATTGCAGTTTGTCGTGTGCGTAATTGC 532
consensus_9602#2 ------------------------------------------------------------
consensus_9602#1 TTCTTTCATGAAGGAGGGTGACCTCATTGTCGCTGAAGTTCATGAAGTTTACAAAGATGG 594
consensus_9602#0 ATTTTAGCTCTTACACATAATGGAATGCCAGTATGGGAAACAAGTGTTCTTACTGCATGC 592
consensus_9602#2 ------------------------------------------------------------
consensus_9602#1 AACATTACAACTTCATATGCCGGG------------------------------------ 618
consensus_9602#0 GAAGCCAGTTGGTCAGCTGATCAACAAAATGACGATGATGATGATGAGTATCAGCTGGAA 652
consensus_9602#2 ------------------------------------------------------------
consensus_9602#1 ------------------------------------------------------------
consensus_9602#0 TTCGAAACTAGTATCAATAATGATTCTTCGGGTAGTAAATCTCGTAACCGCATCGCTCGT 712
consensus_9602#2 ------------------------------------------------------------
consensus_9602#1 ------------------------------------------------------------
consensus_9602#0 TTATTGCATCCAGAAGTTGCTCGTCGTCTTGTTACGCTTGNTCAAGCAAAATTAAAATCT 772
consensus_9602#2 ------------------------------------------------------------
consensus_9602#1 ------------------------------------------------------------
consensus_9602#0 GATTACTAACTTTGTACAAAAATAATACAAATATCTTGTAAATAAAAGAATTTATT 828
consensus_9602#2 --------------------------------------------------------
consensus_9602#1 --------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||