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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1491 fasta sequence
[TATGTTCATAAAGCAATCAAATTGTCGCATGATTTACGCAACAAGGATTTTTCAATAAAAACTACTCGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAATGTAATAGAAATTTTGCTTGTAAATCCAACTTACTTCAACATATTCATGTTCTTCATAATCGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAATAAACACGTAAAACCTATTCACGAAAAATTGAAATATGCGTGTGATCAGTGTAGTGCAGAGTTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATATCCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAG--AGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG-TATAATATTTATTTTTTAATTG-TTTTTACTTTATATAATCTTCACTGTACAAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATATGCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATTTCGAAGCGTATTGACTTTCAACTAACTATTTTGCCAGCTACGACATTTTGATCCGGCGTTGTCAATCGTATTCGATTGTAAAACAGTATTAGTCCAGGAAGTAAATGAAATTAATGGAGATGAAGAAAAATGGAAGTCAGATTCAGCTATGATTGTAGTAGATTGATTGATCACGTTATATATGTGTAATGTAAGTGTAGTAGAACACAAATATCTGAAATTGTGTCAAAAAAAACAAACCCCTAATTAGTTATGTCAAATGTAGCTTCTTGAAAATAAATATGTTGTTTTT]
[+] EMBL CD121774 [TATGTTCATAAAGCAATCAAATTGTCGCATGATTTACGCAACAAGGATTTTTCAATAAAAACTACTCGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAATGTAATAGAAATTTTGCTTGTAAATCCAACTTACTTCAACATATTCATGTTCTTCATAATCGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAATAAACACGTAAAACCTATTCACGAAAAATTGAAATATGCGTGTGATCAGTGTAGTGCAGAGTTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATATCCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTT ]
[+] EMBL AA566185 [ ATGATTTACGCAACAAGGATTTTTCAATAAAAACTACACGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAATGTAATAGAAATTTTGCTTGTAAATGCAACTTACTTCAACATATTCATGTTCTTCATAATCGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAATAAACACGTAAAATCTATTCACGAAAA ]
[+] EMBL CD079951 [ TTGAAATATGCGTGTGATCAGTGTAGTGCAGAGTTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATATCCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAG AGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTNTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAAC AAANANATACTCATTATCCACACAATCATTATTAGAACAT ANACANACTNTAGTTTCTCATTTGGTTCAATACCNTNTNCTCTTTGTATGCTTATCAGAAGTACCTTNTGNNAT ATA TTATTNNTTAATNGNTNNNTAC TTATATAAT ]
[+] EMBL CD097339 [ TCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTTATCAGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAGATAGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGT ]
[-] EMBL CD074147 [ AGTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAG AGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG TATAATATTTATTTTTTAATTG TTTTTACTTTATATAATCT ]
[+] EMBL CD197210 [ TTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTCTCTCATTTGGTTCA ]
[+] EMBL CD158484 [ ACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGC ]
[+] EMBL CD078563 [ TCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG TATAATATTTATTTTTTAATTG TTTTTACTTTATATAATCTTCACTGTACAAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATATGCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATTTCGAAGCGTATTGACTTTCAACTAACTATTTTGC ]
[-] EMBL CD073030 [ AGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG TATAATATTTATTTTTTAATTG TTTTTACTTTATATAATCTTCACTGTACAAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATATGCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATTTCGAAGCGTATTGACTTTCAACTAACTATTTTGCCAGCTACGACATTTTGATCCGGCGTTGTCAATCGTATTCGATTGTAAAACAGTATTAGTCCAGGAAGTAAATGAAATTAATGGAGATGAAGAAAAATGGAAGTCAGATTCAGCTATGATTGTAGTAGATTGATTGATCACGTTATATATGTGTAATGTAAGTGTAGTAGAACACAAATATCTGAAATTGTGTCAAAAAAAACAAACCCCTAATTAGTTATGTCAAATGTAGCTTCTTGAAAATAAATATGTTGTTTTT]
consensusID : consensus_9613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence
[ATTTTTGGCACTGAGGTTTCCCTTTATCAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTACACTTATAACGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATAT]
[+] EMBL CD080833 [ATTTTTGGCACTGAGGTTTCCCTTTATCAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTACACTTATAACGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9613#0 TATGTTCATAAAGCAATCAAATTGTCGCATGATTTACGCAACAAGGATTTTTCAATAAAA 60
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 ACTACTCGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAA 120
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TGTAATAGAAATTTTGCTTGTAAATCCAACTTACTTCAACATATTCATGTTCTTCATAAT 180
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAAT 240
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 AAACACGTAAAACCTATTCACGAAAAATTGAAATATGCGTGTGATCAGTGTAGTGCAGAG 300
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATAT 360
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAA 420
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAA 480
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GGAAATCTAGAGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTG 540
consensus_9613#1 ---ATTTTTGGCAC-TGAGGTTTCCCTTTATCA-GGAATAAGATATGCATGTAATCGTTG 55
* * * * ** * * ** ** * **************************
consensus_9613#0 TGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGG 600
consensus_9613#1 TGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGG 115
************************************************************
consensus_9613#0 GACAGAATATCGATGCGATCAATGTAATAGAAAATT-TACATCTAAAGCCAACTTAAATG 659
consensus_9613#1 GACAGAATATCGATGCGATCAATGTAATAGAAAATTACACTTATAACGCCAACTTAAATG 175
************************************ ** * *** *************
consensus_9613#0 AACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAAT 719
consensus_9613#1 AACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAAT 235
************************************************************
consensus_9613#0 ATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTT 779
consensus_9613#1 ATATACAAAGAAGTGGGCTGAATAGACATAT----------------------------- 266
*******************************
consensus_9613#0 CATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATG 839
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAG 899
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 ATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATA 959
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 AAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAA 1019
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GTACCTTTTGTATAATATTTATTTTTTAATTGTTTTTACTTTATATAATCTTCACTGTAC 1079
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 AAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATAT 1139
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATT 1199
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TCGAAGCGTATTGACTTTCAACTAACTATTTTGCCAGCTACGACATTTTGATCCGGCGTT 1259
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 GTCAATCGTATTCGATTGTAAAACAGTATTAGTCCAGGAAGTAAATGAAATTAATGGAGA 1319
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TGAAGAAAAATGGAAGTCAGATTCAGCTATGATTGTAGTAGATTGATTGATCACGTTATA 1379
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 TATGTGTAATGTAAGTGTAGTAGAACACAAATATCTGAAATTGTGTCAAAAAAAACAAAC 1439
consensus_9613#1 ------------------------------------------------------------
consensus_9613#0 CCCTAATTAGTTATGTCAAATGTAGCTTCTTGAAAATAAATATGTTGTTTTT 1491
consensus_9613#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||