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Schistosoma mansoni
cluster # 9631 cluster # 9631       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9631#0 length = 1291 sequences # 7  
consensus_9631#1 length = 457 sequences # 3  

consensusID : consensus_9631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1291
fasta sequence
                              [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC-TTCGAGCT-GTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGCTGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGATGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGATCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATTTTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCATCTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTCCATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAAGTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAAGAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATGGTAGTGTAAATGGTGCTTCGTCGATAGAGCA]

[+] EMBL CD150024             [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC TTCGAGCT GTGTGCGTTGAACAAACTCACAGCCGCTGATTTANATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD150025             [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTANAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC TTCGAGCT GTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD149995             [                                                                                                                                                                                                                                                                    CAAACTTTCGAGCTGGTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTAGAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD150018             [                                                                                                                                                                                                                                                                           cCGAGCTGGTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTAGAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD162555             [                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGGAAAGCCAAACCAAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AI395257             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aaaccCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCC AACCCAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGCTGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGATGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGATCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATTTTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAAAAAAAAAAAAAA                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AI976378             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAATAACTATTTTTCTTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCATCTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTCCATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAAGTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAAGAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATGGTAGTGTAAATGGTGCTTCGTCGATAGAGCA]


>consensus_9631#0 TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATT AGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAG GAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACA GTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGT CAAAGTATGGTTAAGTCTTGCAAACTTCGAGCTGTGTGCGTTGAACAAACTCACAGCCGC TGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATT AATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTA CCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACT TGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGA TAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTG GGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATT GCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGC TGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGA TGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGA TCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATT TTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGT AGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCAT CTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTC CATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAA GTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAA GAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATG GTAGTGTAAATGGTGCTTCGTCGATAGAGCA



consensusID : consensus_9631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 457
fasta sequence
                              [CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC]

[-] EMBL CD192743             [CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAG                                                                                                                                                                                                                                                                ]
[+] EMBL CD065681             [   GTCAGGTGT CA   TTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAGACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC]
[-] EMBL CD192132             [                                              TTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAG                                                                                                                                                                                                                                                                ]


>consensus_9631#1 CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTA AAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGA AACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTG AATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGG AATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGG GAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATA TGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAAC GTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9631#0      TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATT 60
consensus_9631#1      CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCT- 59
                       **    *  *****  ***  *   *** *  *** ***  ** *    *   *   * 

consensus_9631#0      AGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAG 120
consensus_9631#1      --AAAATTT-------------GGCTATATGCAGCAAAGTTCGAAAT---CCGTCAA-AA 100
                        *** * *             *    *   *     * **   ***   *  **** * 

consensus_9631#0      GAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACA 180
consensus_9631#1      GAAATTAACAGATGCGAGGAAACTACTGGG---------TACTG-CTCTGGGTATGT--- 147
                      ******    ***  *  * ** ** *  *         ** ** **  * *  **    

consensus_9631#0      GTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGT 240
consensus_9631#1      GTCCAAAAGACAAGCTATTCCGCGGTTATATTGAA---TTGGAGATCCAGT------TGA 198
                      **   *  *  **  *  ** *    * *** ***   *   * *** *        ** 

consensus_9631#0      CAAAGTATGGTTAAGTCTTGCAAACTTCGAGCTGTGTGCGTTGAACAAACTCACAGCCGC 300
consensus_9631#1      GAGAATTCGAT-AGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAAT 257
                       * * *  * * *  * * * *** *    *     * * * ***    ***        

consensus_9631#0      TGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATT 360
consensus_9631#1      TGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTG---GGAGAGACAGATCGT 314
                      **   ** ***    ** * *     ***  ****   *      *** * * ***   *

consensus_9631#0      AATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTA 420
consensus_9631#1      G-CACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATT 373
                         ** **    * *****   *   **** *      *      *   *   ** * * 

consensus_9631#0      CCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACT 480
consensus_9631#1      ATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACT 433
                           * *** ***  *   *  *   ** * ** ** *     ****** *** * ***

consensus_9631#0      TGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGA 540
consensus_9631#1      TTA----TCGAAGACTGCTAAAT-CGAAC------------------------------- 457
                      * *    * ****     * ***  ***                                

consensus_9631#0      TAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTG 600
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      GGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATT 660
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      GCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGC 720
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGA 780
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGA 840
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATT 900
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      TTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGT 960
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      AGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCAT 1020
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      CTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTC 1080
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      CATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAA 1140
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      GTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAA 1200
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      GAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATG 1260
consensus_9631#1      ------------------------------------------------------------
                                                                                  

consensus_9631#0      GTAGTGTAAATGGTGCTTCGTCGATAGAGCA 1291
consensus_9631#1      -------------------------------
                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)