These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1291 fasta sequence [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC-TTCGAGCT-GTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGCTGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGATGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGATCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATTTTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCATCTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTCCATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAAGTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAAGAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATGGTAGTGTAAATGGTGCTTCGTCGATAGAGCA] [+] EMBL CD150024 [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC TTCGAGCT GTGTGCGTTGAACAAACTCACAGCCGCTGATTTANATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACA ] [+] EMBL CD150025 [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTANAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC TTCGAGCT GTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGT ] [-] EMBL CD149995 [ CAAACTTTCGAGCTGGTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTAGAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACA ] [-] EMBL CD150018 [ cCGAGCTGGTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTAGAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACA ] [+] EMBL CD162555 [ AAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGGAAAGCCAAACCAAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAA ] [-] EMBL AI395257 [ aaaccCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCC AACCCAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGCTGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGATGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGATCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATTTTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAAAAAAAAAAAAAA ] [+] EMBL AI976378 [ TTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAATAACTATTTTTCTTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCATCTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTCCATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAAGTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAAGAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATGGTAGTGTAAATGGTGCTTCGTCGATAGAGCA] consensusID : consensus_9631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 457 fasta sequence [CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC] [-] EMBL CD192743 [CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAG ] [+] EMBL CD065681 [ GTCAGGTGT CA TTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAGACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC] [-] EMBL CD192132 [ TTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9631#0 TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATT 60 consensus_9631#1 CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCT- 59 ** * ***** *** * *** * *** *** ** * * * * consensus_9631#0 AGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAG 120 consensus_9631#1 --AAAATTT-------------GGCTATATGCAGCAAAGTTCGAAAT---CCGTCAA-AA 100 *** * * * * * * ** *** * **** * consensus_9631#0 GAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACA 180 consensus_9631#1 GAAATTAACAGATGCGAGGAAACTACTGGG---------TACTG-CTCTGGGTATGT--- 147 ****** *** * * ** ** * * ** ** ** * * ** consensus_9631#0 GTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGT 240 consensus_9631#1 GTCCAAAAGACAAGCTATTCCGCGGTTATATTGAA---TTGGAGATCCAGT------TGA 198 ** * * ** * ** * * *** *** * * *** * ** consensus_9631#0 CAAAGTATGGTTAAGTCTTGCAAACTTCGAGCTGTGTGCGTTGAACAAACTCACAGCCGC 300 consensus_9631#1 GAGAATTCGAT-AGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAAT 257 * * * * * * * * * *** * * * * * *** *** consensus_9631#0 TGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATT 360 consensus_9631#1 TGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTG---GGAGAGACAGATCGT 314 ** ** *** ** * * *** **** * *** * * *** * consensus_9631#0 AATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTA 420 consensus_9631#1 G-CACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATT 373 ** ** * ***** * **** * * * * ** * * consensus_9631#0 CCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACT 480 consensus_9631#1 ATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACT 433 * *** *** * * * ** * ** ** * ****** *** * *** consensus_9631#0 TGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGA 540 consensus_9631#1 TTA----TCGAAGACTGCTAAAT-CGAAC------------------------------- 457 * * * **** * *** *** consensus_9631#0 TAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTG 600 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 GGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATT 660 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 GCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGC 720 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 TGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGA 780 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 TGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGA 840 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 TCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATT 900 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 TTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGT 960 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 AGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCAT 1020 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 CTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTC 1080 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 CATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAA 1140 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 GTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAA 1200 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 GAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATG 1260 consensus_9631#1 ------------------------------------------------------------ consensus_9631#0 GTAGTGTAAATGGTGCTTCGTCGATAGAGCA 1291 consensus_9631#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||