These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 714 fasta sequence [TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAAT-CTC-GGC-GGGCAAG-AAATAAAAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTGTAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAATTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG-TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA-AACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT-AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT-TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGTATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAAATACTAAAGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAGA] [+] EMBL CD064942 [TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAAT CTC GGC GGGCAAG AAATAAAAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTGTAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAATTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAGAACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGCACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGTATCTGCCTTACCT ] [+] EMBL CD127025 [ AAATGCTCGGGCGGGGCAAGTAAATAAAAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTGTAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAATCTACCCAAACACATAAATTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAGTTCGTTTGGAGGGACTTGAGTTTGACGGGGTCGAG ] [+] EMBL CD147447 [ CTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATTGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGACGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACTAAAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTTCGGCATGTCATGATGATCTTCACGTTGTTCTGGACGCTTGTCAAAATCAAGTGATTGGTGGTCGCCGTGTAT ] [-] EMBL CD097404 [ TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGATGAATCAAGACTGACTATTCGCAACTTACCATACTCAATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTAGTGGTCGCCGTGTATC ] [-] EMBL CD097382 [ TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTCGTCAAAATAAAGTGATTAGTGGTCGCCGTGTATC ] [-] EMBL CD158859 [ ATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGATGAATTAAGACCGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTG ] [+] EMBL CD145405 [ TGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGTATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAAATACTAAAGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAGA] [-] EMBL CD126995 [ AGTTACAACATCAATTTCCTACAGCCAAATCAATCATAATAAATACCAAGAAAACTGGGGTTAACATAGGATCCTGTTCACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGCACGCTTGTCAAAATAAAGTGATTAGTGGTCGCCGTGTACCTGCCTTACCg ] consensusID : consensus_9639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGGTAAGATGATATCAGCAAAATTCCAGTTAGCAAGCAATGTTTCTTAAGAGTTTTAGACCAGGTTATTTAGTTTTTAACATCACCATATACAGCAAAGGGTTTGGTTTTTCTAAGTTGAGTAGTCGTGCTGAGTAACATTAGTAATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAAACTATTTGGTTACTTTTCTTGAGCTAGCTACCCCTCTTTGGACATAGGCTGCTGACCAAAAATCTCCAAGTA] [-] EMBL CD086774 [TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGGTAAGATGATATCAGCAAAATTCCAGTTAGCAAGCAATGTTTCTTAAGAGTTTTAGACCAGGTTATTTAGTTTTTAACATCACCATATACAGCAAAGGGTTTGGTTTTTCTAAGTTGAGTAGTCGTGCTGAGTAACATTAGTAATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAAACTATTTGGTTACTTTTCTTGAGCTAGCTACCCCTCTTTGGACATAGGCTGCTGACCAAAAATCTCCAAGTA] consensusID : consensus_9639#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [ATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACCGACTATTCGCAGCAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATTCAGTAGAATCCACCATACTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTACAAGAATATGAGCGTAGTGGAAATCCGCCAACTTCAGGCTCATTTGAAGAGTGTTGTTTC] [-] EMBL CD158858 [ATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACCGACTATTCGCAGCAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATTCAGTAGAATCCACCATACTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTACAAGAATATGAGCGTAGTGGAAATCCGCCAACTTCAGGCTCATTTGAAGAGTGTTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9639#0 TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAATCTCGGCGGGCAAGAAATAA 60 consensus_9639#2 ------------------------------------------------------------ consensus_9639#1 ------------------------------------------------------------ consensus_9639#0 AAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTG 120 consensus_9639#2 ------------------------------------------------------------ consensus_9639#1 ------------------------------------------------------------ consensus_9639#0 TAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAA 180 consensus_9639#2 ------------------------------------------------------------ consensus_9639#1 ------------------------------------------------------------ consensus_9639#0 TTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTC 240 consensus_9639#2 ------------------------------------------------------------ consensus_9639#1 ---------------------------------TGCACGCTTGCATCTGTTCAGAAAGTC 27 consensus_9639#0 TGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG 300 consensus_9639#2 --------------------------------------------ATTCAAATGCTACTAG 16 consensus_9639#1 TGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG 87 **************** consensus_9639#0 TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCA---TCGTTTAGGCAAGTTACGCG 357 consensus_9639#2 TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCA---TCGTTTAGGCAAGTTACGCG 73 consensus_9639#1 TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGGTAAGATGATATCAGCAAAATTCCAG 147 ********************************** * * * * **** * * * consensus_9639#0 CCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACTGACTATTCGCAA 417 consensus_9639#2 CCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACCGACTATTCGCAG 133 consensus_9639#1 TTAGCAAGCAA-TGTTTCTTAAGAGTTTTAGACCAGGTTATTTAGTTT--TTAACATCAC 204 * * ** ** ** * * *** *** ** ** ** consensus_9639#0 CTTACCATACTCGATTACTAAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAAT 477 consensus_9639#2 CAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATTCAGTAGAATCCAC 193 consensus_9639#1 CATAT-ACAGCAAAGGGTTTGGTTTTTCTAAGTTGAGTAGTCGTGCTGAGTAACATTAGT 263 * * * * * * * * * ** ** consensus_9639#0 CATA---ATAAATACGAAGAAAACTGGGGTTAACAAAGG-ATCCTGTTTACTTGAGTTTG 533 consensus_9639#2 CATA---CTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTACAAGAATATG 250 consensus_9639#1 AATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAAACTAT-TTGGTTACTTTTCT-TG 321 ** * * * ** * ** * *** * ** consensus_9639#0 AATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTC 593 consensus_9639#2 AGCGTAGTGGAAATCCGCCAACTTC-----AGGCTCATTTGAAGAGTGTTGTTTC----- 300 consensus_9639#1 AGCTAGCTACCCCTCTTTGGACATA---GGCTGCTGACCAAAAATCTCCAAGTA------ 372 * * ** *** ** * consensus_9639#0 GCCGTGTATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAA 653 consensus_9639#2 ------------------------------------------------------------ consensus_9639#1 ------------------------------------------------------------ consensus_9639#0 ATACTAAAGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAG 713 consensus_9639#2 ------------------------------------------------------------ consensus_9639#1 ------------------------------------------------------------ consensus_9639#0 A 714 consensus_9639#2 - consensus_9639#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||