These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 656 fasta sequence [GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA] [-] EMBL CD149464 [GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTCTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCCCTCGCTTGTATACTAAC ] [+] EMBL CD094821 [ TAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGATGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGA ] [+] EMBL CD094918 [ TAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGA ] [+] EMBL CD095208 [ TAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTA ] [-] EMBL CD149495 [ GTTTGTGATTCATATCCGTTTCTAGTCTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGNTAATATACTCTTCTTCCTGTTCTGCCCCCGCTTGTATACTAAC ] [-] EMBL CD149554 [ TTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTATTGTCTAAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTATTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGATAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAAC ] [-] EMBL CD095334 [ TTTAAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA] consensusID : consensus_9640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 637 fasta sequence [GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCCAATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACATTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTGATTGGGGAGCCTTTTCCTCACTACCGGATGAGATAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTACAAAGAATACCAAGTCCACTACTGATAGGACGGGGAACTGTTGAACTGTTATTAGGTATACCATCTGAAATACTAGCAAGGTTTTGGGCACTTGAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTCCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAGTCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATCCGGTAGTGAGGAAAAGGCTCCCCAATCA] [+] EMBL CD088314 [GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCCAATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACATTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTGATTGGGGAGCCTTTTCCTCACTACCGGATGAGATAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTACAAAGAATACCAAGTCC ] [-] EMBL CD116361 [ AATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACATTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTG ] [-] EMBL CD095807 [ GATTGGGGAGCCTTTTCCTCACTACCGGATGAGACAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTACGAAGACTACCAGGTCCACTACTGATAGGACGGGGAACTGTTGAACTGTTATTAGGTATACCATCTGAAATACTAGCAAGGTTTTGGGCACTTGAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTCCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAGTCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATCCGGTAGTGAGGAAAAGGCTCCCCAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9640#0 GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCA 60 consensus_9640#1 ----GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCC-- 54 * ** * * ** * ** * * * * *** * consensus_9640#0 GATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCA 120 consensus_9640#1 AATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCA 114 ** ** * ***** * * ** * * * * *** consensus_9640#0 AGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGA 180 consensus_9640#1 GATACATTGGATTTCGAAGTCAAATCATTGGGGATA-GAGGAAGACTGACTTGATTGGGG 173 * **** * * ** ** * * * ** * ** * ** *** * consensus_9640#0 TTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGT 240 consensus_9640#1 AGCCTTTTCCTCACTA-----CCGGATGAGATAGATATTCTACCAGGAGAAACAGGACAC 228 * * * * * *** * * * ** * * * * consensus_9640#0 TCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGA 300 consensus_9640#1 GTA-ACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTG 287 * * * * * *** **** * ** ** * * **** * * consensus_9640#0 TTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTT 360 consensus_9640#1 TTTGAAAGAGCTACAAAGAATACCAAGTCCACTACTGA---TAGGACGGGGAACTGTTGA 344 ** * ** ** * *** * * * * ** * * * ** consensus_9640#0 TCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGT 420 consensus_9640#1 ACTGTTATTAGGTATACCATCT--------GAAATACTAGCAAGGT-TTTGGGCACTTGA 395 ** ** *** * **** ** ** * ** * * * ** consensus_9640#0 TCTGCTTT-TGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAG 479 consensus_9640#1 AAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCG-TAATATTTTCTTTTCAG 454 *** * * ** *** * ** ** * * * ** * ** ** consensus_9640#0 ACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTG 539 consensus_9640#1 A--TTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTCCCTGTTCCTGCTC 512 * ** * **** ** * ** * **** *** * *** **** consensus_9640#0 TAAAG-AGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCAT 598 consensus_9640#1 AAGTGCATTCTCTAATTCG---ATTTTCTCTCTGCGTAAACGAT--CTAAACAGTCCTGT 567 * * * ** ** *** * * * * * **** * ** * ** * * consensus_9640#0 CAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA-- 656 consensus_9640#1 T--TGTGATTCATATCCGTTTCTAGTTTT--TCAATTCTTCTCATCCGGTAGTGAGGAAA 623 * * ** *** * *** **** * * * ***** * * * * consensus_9640#0 -------------- consensus_9640#1 AGGCTCCCCAATCA 637 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||