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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1040 fasta sequence
[AAGGCAATGGAAATGACGGATGATCCTCTGGTTCTAGTTTTCAAAGCCTTAGACACAGAAAATAAGGGATATATTACTGTAGAGCAATTTGTATCTACTTTTAAAGAGTTTTATAATTCAAGTGGAGCTGATGGAGAAAGGAGATCATCACTTTCTTCAAATGACATCATGAAAGTAGTGCAAACTTTAGATCCAGAAAATGATGGAATTATACATTATGAAGATTTTAAGAAGGCTTTTGAGGGGAACATCAACTTTGATGAAGACAATACATCAAAGCATTCAAATTCTCTATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGTTATTGTTTCTAACACATTTAAATATAAAGAACATGTATAGTATCCAAACAAATTGTGTTTAGTATGCAAAAGTTTGTGGAGATTGCCTTCATTTTACATCATGAATTAACTTTAGTGAGACAATCACTAGAAACC]
[+] EMBL CD116337 [AAGGCAATGGAAATGACGGATGATCCTCTGGTTCTAGTTTTCAAAGCCTTAGACACAGAAAATAAGGGATATATTACTGTAGAGCAATTTGTATCTACTTTTAAAGAGTTTTATAATTCAAGTGGAGCTGATGGAGAAAGGAGATCATCACTTTCTTCAAATGACATCATGAAAGTAGTGCAAACTTTAGATCCAGAAAATGATGGAATTATACATTATGAAGATTTTAAGAAGGCTTTTGAGGGGAACATCAACTTTGATGAAGACAATACATCAAAGCATTCAAATTCTCTATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACAAAACAACTTCTCATCCAGTGCANATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTG ]
[-] EMBL CD202555 [ TTCAAATTCTCTATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAA ]
[+] EMBL CD125509 [ TATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGATATGGAGTCTAATTCTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAGGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTANAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAAGCTGAAC ]
[+] EMBL CD198142 [ GGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTATAATGTCTAAAGATCAATAAAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGCTGTGGAAGAACGTGTTAAAGAAGCCGATGCAAGATCAAGTCATGCATTATAAGCTGAACCACAACATGTGCAATCAATATTGTCACGCTCTTCACTAGAACATACTCATTAATCA ]
[+] EMBL CD198137 [ GGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCA ]
[+] EMBL CD190680 [ GCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGTTATTGTTTCTAACACATTTAAATATAAAGAACATGTATAGTATCCAAACAAATTGTGTTTAGTATGCAAAAGTTTGTGGAGATTGCCTTCATTTTACATCATGAATTAACTTTAGTGAGACAATCACTAGAAACC]
consensusID : consensus_9641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 605 fasta sequence
[ACCTCCCTGTAGGATCCCATTGTATATCACTAACAGTTGGATGTTCTCCCTTAGCTAAAATCTGACCATCATTTGCTGAAATGAATTCCAGTATCCCATCAGCACTTCTTAAACCTGCTGCTACAATAATGCCACCCTTAGATGACCAACGAAGATCATTGGTTCGAGGTGAGGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTACAGCAGCTGCAGCGAGCACTGGNTCAACTGAAGTA]
[+] EMBL CD153298 [ACCTCCCTGTAGGATCCCATTGTATATCACTAACAGTTGGATGTTCTCCCTTAGCTAAAATCTGACCATCATTTGCTGAAATGAATTCCAGTATCCCATCAGCACTTCTTAAACCTGCTGCTACAATAATGCCACCCTTAGATGACCAACGAAGATCATTGGTTCGAGGTGAGGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCG GTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTACAGCAGCTGCAGCGAGCACTGGNTCAACTGAAGTA]
[+] EMBL CD181485 [ TATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTAC ]
[+] EMBL CD157032 [ TTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACG ]
[+] EMBL CD180499 [ TTATCGATCTTCGAAGAACTAATGAACAATTAACTGAACCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9641#0 AAGGCAATGGAAATGACGGATGATCCTCTGGTTCTAGTTTTCAAAGCCTTAGACACAGAA 60
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AATAAGGGATATATTACTGTAGAGCAATTTGTATCTACTTTTAAAGAGTTTTATAATTCA 120
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AGTGGAGCTGATGGAGAAAGGAGATCATCACTTTCTTCAAATGACATCATGAAAGTAGTG 180
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CAAACTTTAGATCCAGAAAATGATGGAATTATACATTATGAAGATTTTAAGAAGGCTTTT 240
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GAGGGGAACATCAACTTTGATGAAGACAATACATCAAAGCATTCAAATTCTCTATCTAGG 300
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAAC 360
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGAC 420
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 TCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGT 480
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGAT 540
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 ATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGC-GTCGAATGGAAGAACGTGTAGA 599
consensus_9641#1 ---ACCTCCCTGTAGGATCCCATTGTATATCACTAACAGTTGGATGTTCTCCCTTAGCTA 57
** * ** *** * **** * ** * *** * * *
consensus_9641#0 AGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGA 659
consensus_9641#1 AAATCTGACCATCATTTGCTGAAATGAAT-TCCAGTATCCCATCAGCACTT-CTTAAACC 115
* *** * **** * * **** * * * * * * ** * * **
consensus_9641#0 GAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGC 719
consensus_9641#1 TGCTGCTACAATAATGCCACCCTTAGATGACCAACGAAGATCATTGGTTCGAGGTGAGGC 175
**** *** *** * ** * * * ** ** **
consensus_9641#0 AAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTC 779
consensus_9641#1 AAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTC 235
************************************************************
consensus_9641#0 TTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAG 839
consensus_9641#1 TTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAG 295
************************************************************
consensus_9641#0 TGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATAT 899
consensus_9641#1 TGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATAT 355
************************************************************
consensus_9641#0 TATCGTTATT---GTTTCTAAC--ACATTTAAATATA----AAGAACATGTA--TAGTAT 948
consensus_9641#1 TATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTT 415
***** * ** **** *** **** * * ******* * * **** *
consensus_9641#0 CCAAACA-------AATTGT-----GTTTAGTATGC---------AAAAGTTTGTGGAGA 987
consensus_9641#1 TCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAA 475
*** * *** * ** * ** * * ***** * ** *
consensus_9641#0 TTGCCTTCATTTTACAT--CATGAATTA----ACTTTAGTGAGACAATCACTAGAAACC- 1040
consensus_9641#1 GGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACG 535
** * ** * * **** **** * ** * ** **** * * ** *
consensus_9641#0 ------------------------------------------------------------
consensus_9641#1 AAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTACAGCAGCTGCAGCGAGCACTGGNTC 595
consensus_9641#0 ----------
consensus_9641#1 AACTGAAGTA 605
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||