These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 911 fasta sequence [AGTGATGCAATACAGTCCTCAAAATCTCCTCTTGATGGATCAAATGCAAAGATAACTAGGTCCAGTTAATACCAAAGGGCCTGCCCCACCTATTCCTGTTTTATCCCGACATGATATCAGACGCGATCGACAAAGCAACTTCATTCCATACACAGAATTACACAAACAGCTATATGATATAAACAATGAACTTTCCAATCTGGAACTATCTGCTCGCGAAATTCAAACAAGTATTAGAGAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTTGAATTAAAGGATAATCTTTTCAAAAAGGGATCAGAGTTACTTCAAAGGCTTCGTTGTCAAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAAGGGCGAACTCTAATGGCCAAACAAGACATTCTAAAAACTAAAGAAGAAAAAGCTCGTGAAGAAGAGCTAATCTCTGACTTGTTGTGTGTGGTTGACAAAAGAGCTGAACTTTCAGAATCCACTGGAGATTTCGAACCGAAGCATCGAGCGAGATCATCTGGTCGAAAAACCATCGAAGGTAAATTCAAACAAATATGCCTCAGTTTGCGACATTCTAGTCTGTCACAAACAAATTTATCATCCATTCGGGATAAATCATTGAAAAAAGTACGAAAGTTGAAAGCTTCTACCATATCTCGATTGAAAAACAAGACAATTTTTCGATAGGAATCGCTAATTTTTTAAACCTATATATGCGGATAGACCCGACTNTGCATCGAAAGGACTATCATCCCATTAATAGTATTAACATGGTATGAAGTTNTATGCATCCAGTATACTCTGCATTGTTTTTACAACAGTTTTTATCTGTTTACTNTTATTATCATCAAATGGTTTTTCTTATTTAGAAATAGAA] [-] EMBL CD137069 [AGTGATGCAATACAGTCCTCAAAATCTCCTCTTGATGGATCAAATGCAAAGATAACTAGGTCCAGTTAATACCAAAGGGCCTGCCCCACCTATTCCTGTTTTATCCCGACATGATATCAGACGCGATCGACAAAGCAACTTCATTCCATACACAGAATTACACAAACAGCTATATGATATAAACAATGAACTTTCCAATCTGGAACTATCTGCTCGCGAAATTCAAACAAGTATTAGAGAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTTGAATTAAAGGATAATCTTTTCAAAAAGGGATCAGAGTTACTTCAAAGGCTTCGTTGTCAAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAAGGG ] [+] EMBL CD080212 [ CGACATGATATCAGACGCGATCGACAAAGCAACTTCATTCCATACACAGAATTACACAAACAGCTATATGATATAAACAATGAACTTTCCAATCTGGAACTATCTGCTCGCGAAATTCAAACAAGTATTAGAGAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTTGAATTAAAGGATAATCTTTTCAAAAAGGAATCAGAGTTACTTCAAAGGCTTCGTTGTCAAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAACTACGAACTCTAATGGCCAAACAAGACATTCTAAAAACTAAAGAAGAAAAAGCTCGTGAAGAAGAGCTAATCTCTGACTTGTTGTGTGTGGTTGACAAAAGAGCTGAACTTTCAGAATCCACTGGAGATTTCGAACCGAAGCATCGAGCGAGATCATCTGGTCGAAAAACCATCGAAGGTAAATTCAAACAAATATGCCTCAGTTTGCGACATTCTAGTCTGTCACAAACAAATTTATCATCCATTCGGGATAAATCATTGAAAAAAGTACGAAAGTTGAAAGCTTCTACCATATCTCGATTGAAAAACAAGACAATTTTTCGATAGGAATCGCTAATTTTTTAAACCTATATATGCGGATAGACCCGACTNTGCATCGAAAGGACTATCATCCCATTAATAGTATTAACATGGTATGAAGTTNTATGCATCCAGTATACTCTGCATTGTTTTTACAACAGTTTTTATCTGTTTACTNTTATTATCATCAAATGGTTTTTCTTATTTAGAAATAGAA] consensusID : consensus_9701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 821 fasta sequence [TCATCTGGGACCAATTTTTCCACGGAAAAAGTTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATGGAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATACAGGAAGTCTCTCCTCCTGTTCACACAAATATGATAAGTTTTTATCTGGAAGCTTATCTGAACCTAATTGCGCTGAAGACTATCTGATTATTGTGGCCAACCATCTTTTCAGACATTTCTCTAATACTTGTTTGAATTTCGCGAGCAGATA] [+] EMBL CD198819 [TCATCTGGGACCAATTTTTCCACGGAAAAAGTTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATGGAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGNTATNTCTATGATGNTCTATGTCAGCTACTTTTTTAGCTTCTG ] [+] EMBL CD143318 [TCATCTGGGACCAATTTTTCCACGGAAAAAGTTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATGGAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGCCATCTTCGAA ] [+] EMBL CD095713 [ CTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGT GAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTANAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACANAGACCACATACA ] [+] EMBL CD095735 [ CTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGT GAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGATCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTANAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATAC ] [-] EMBL CD143314 [ TGAAGTATTATTAATTTCTTCCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGTGCTGAGAGTTCACATCATGTGGAGAGTCATCTTCGAACGGATTTAAAGCAGAAGGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATACA ] [+] EMBL CD198800 [ ATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGNTGGAATCTTTTAGTGTTTTGTTTCGTT ] [-] EMBL CD095848 [ TGTTGTGATGTCTTGGATCAGAGTTATTTCTATGATGTTCTATGTCAGCTACTTTTTTAGCTTCTGTCTTCAAAACACTAGTCATTTCAGAAGATGCATTATTACTTAAAACATCAGGAAGTGGTGGTCTTGAAGGAGGTTTGCGTGTTGATTGACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGTGAACTGAATCTTGTTGGGAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGAATCTTTTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACAAAGACCACATACA ] [-] EMBL CD196149 [ TGAGAA TTAGTCAGCG TGGACCATCAGAACAGTTGGAATCTTNTAGTGTTTTGTNTCGTTCTNTGAGATAAGCTAGTTGGTTGTCACGATAGCAACTACGGTGGTAGTTCCTACTAAAAACAGTTAACTGCTCGACACGAAATACGGGTTCTCCACATAGACCACATGCAGGAAGTCTCTCCTCCTGTTCACACAAATATGATAAGTTTTTATCTGGAAGCTTATCTGAACCTAATTGCGCTGAAGACTATCTGATTATTGTGGCCAACCATCTTTTCAGACATTTCTCTAATACTTGTTTGAATTTCGCGAGCAGATA] consensusID : consensus_9701#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TCGAATACGTTTCTAAGTTGTATGGGTCAATAACAAGAAAGTCTTCAGGTCAATTAGGTTCAGATAAGCTTCCAGATAAAAACTTATCATATTTGGTATGCCCTTGCAAATATTATATAACGTGTTTTTAGTGTGAACAGGAGGAGGGACTTCCTGTATGTGGTCTTTGTGGAGAACCCGTATTTCGTGTCGAGCAGTTAACTGTTTTTAGTAGGAACTACCACCGTAGTTGCTATCGTGACAACCAACTAGCTTATCTCAAAGAACGAAACAAAACACTAAAAGATTCCAACTGTTCTGATGGTCCAACGCTGACTAAATTCTCAGGTAAAAAAAATTTGCTCGTCTCCTCTCTATCTTCATTTCTAGAAGCGAATTCATTCCCAACAAGATTCAGTTCACAAAAAGAATTAGACACTGTTAGCAATAAAAAACGTCAATCAACACGCAAACCTCCTTTTCAGACCACACTTCCTGATGTTTTAAGTAATAATGCATC] [+] EMBL CD111974 [TCGAATACGTTTCTAAGTTGTATGGGTCAATAACAAGAAAGTCTTCAGGTCAATTAGGTTCAGATAAGCTTCCAGATAAAAACTTATCATATTTGGTATGCCCTTGCAAATATTATATAACGTGTTTTTAGTGTGAACAGGAGGAGGGACTTCCTGTATGTGGTCTTTGTGGAGAACCCGTATTTCGTGTCGAGCAGTTAACTGTTTTTAGTAGGAACTACCACCGTAGTTGCTATCGTGACAACCAACTAGCTTATCTCAAAGAACGAAACAAAACACTAAAAGATTCCAACTGTTCTGATGGTCCAACGCTGACTAAATTCTCAGGTAAAAAAAATTTGCTCGTCTCCTCTCTATCTTCATTTCTAGAAGCGAATTCATTCCCAACAAGATTCAGTTCACAAAAAGAATTAGACACTGTTAGCAATAAAAAACGTCAATCAACACGCAAACCTCCTTTTCAGACCACACTTCCTGATGTTTTAAGTAATAATGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9701#0 AGTGATGCAATACAGTCCTCAAAATCTCCTCTTGATGGATCAAATGCAAAGATAACTAGG 60 consensus_9701#2 ------------------------------------------------------------ consensus_9701#1 -----------------------------TCATCTGGGACCAATTTTTCCACGGAAAAAG 31 consensus_9701#0 TCCAGTTAATACCAAAGGGCCTGCCCCACCTATTCCTGTTTTATCCCGACATGATATCAG 120 consensus_9701#2 ------------------------------------------------------------ consensus_9701#1 TTTGATTATTCTGTTCCGTGTACCTATTTCTAAAATTAATAGGCGTTGATACCAGAGATG 91 consensus_9701#0 ACGCGATCGACAAAGCAACTTCATTCCA-TACACAGAATTACACAAACAGCTATATGATA 179 consensus_9701#2 ------------------------------------------------------------ consensus_9701#1 GAGGGTTTGATATACTTGATATGTTTGAGTGGTCAGAATCTGAAGTATTATTAATTTCTT 151 consensus_9701#0 TAAACAATGAACTTTCCAATCTGGAACTATCTGC-TCGCGAAATTCAAACAAGTATTAGA 238 consensus_9701#2 --------------------------------------------TCGAATACGTTTCTAA 16 consensus_9701#1 CCGAGTCTGAGGCTGATAAATCGTCGTCAAATGGATTATAAGGCTTATATGTACATTCGT 211 * * * consensus_9701#0 GAAATGTCTGAAAATAATGGAAGCGTCAAGAGACTATTAAAGAAATGGCTCCATACCGTT 298 consensus_9701#2 GTTGTATGGGTCAATAACAAGAAAGTCTTCAGGTCAATTAGGTTCAGAT---AAGCTTCC 73 consensus_9701#1 GCTGAGAGTTCACATCATGTGGA-------GAGTCATCTTCGAACGGATTTAAAGCAGAA 264 * ** * * * * * * consensus_9701#0 GAATTAAAGGATAATCTTTTCAAAAAGGGATCAGAGTTACTT-CA-AAGGCTTCGTTGTC 356 consensus_9701#2 AGATAAAAACTTATCATATTTGGTATGCCCTTGCAAATATTA-TATAACGTGTTTTTAGT 132 consensus_9701#1 GGATAGAAAACTATGTTCTGATGTCTTGGATCAGAGTTATTTCTATGATGT-TCTATGTC 323 ** ** ** * * * * ** * * * * * * consensus_9701#0 AAGAGCTAGAGGACCGTCATGCTGATTTAGAATATGAAGGG-CGAACTCTAATGGCCAAA 415 consensus_9701#2 GTGAACAGGAGGAGGGACTTCCTG-TATGTGGTCTTTGTGG-AGAACCCGTATTTCGTGT 190 consensus_9701#1 AGCTACTTTTTTAGCTTCTGTCTTCAAAACACTATTCATTTCAGAAGATGCATTATTACT 383 * * * ** * * *** ** consensus_9701#0 CAAGACATTCTAAAAACTAAAGAAGAAAAAGCTCGTGAAGAAGAGCTAATCTCTGACTTG 475 consensus_9701#2 CGAGCAGTT-----AACTG-------------TTTTTAGTAGGAACTACCACCGTAGTTG 232 consensus_9701#1 TAAAACATC--AGGAAGTGGTGG---------TCTTGAAGGAGGTTTG-CGTGTTGATTG 431 * * ** * * * * * * *** consensus_9701#0 TTGTGTGTGGTTGACAAAAGAGCTGAACTTTCAGAATCCACTGGAGATTTCGAACCGAAG 535 consensus_9701#2 CTAT-CGTGAC-AACCAACTAGCTTATCTCAAAGAAC------GAAACAAAACACTAAAA 284 consensus_9701#1 ACGTTTTTTATTGCTAACAGTGTCTAATTCTTTTTGT------GAACTGAATCTTGTTGG 485 * * * * * * ** consensus_9701#0 CATCGAGCGAG-ATCATCTGGTCGAAAAACCATCGAAGG-TAAATTCAAACAAATATGCC 593 consensus_9701#2 GATTCCAACTG-TTCTGATGGTCCAACGCTGACTAAATTCTCAGGTAAAAAAAATTTGCT 343 consensus_9701#1 GAATGAATTCGCTTCTGAGAATTTAGTCAGCGTTGGACCATCAGAACAGTTGGA-ATCTT 544 * * ** * * * * * * * * consensus_9701#0 TCAGTTTGCGACATTCTAGTCTGTCACAAACAAATTTATCATCCATTCGGGATAAATCAT 653 consensus_9701#2 CGTCTCCTCTCTATCTTCATTT-CTAGAAGCGAATTCATTCCCAACAAGATTCAGTTCAC 402 consensus_9701#1 TTAGTGTTTTGTTTCGTTCTTTGAGATAAGCTAGTTGGTTGTCA---CGATAGCAACTAC 601 * * * * * * ** * * ** * * * * consensus_9701#0 TGAAAAAAGTACGAAAGTTGAAAGCTTCTACCATATCTCGATTGAAAAACAAGACAATTT 713 consensus_9701#2 AAAAAGAATTA--GACACTGTTAGCAA-TAAAAAACGTCAATCAACACGCAAACCTCCTT 459 consensus_9701#1 GGTGGTAGTTCC---TACTAAAAACAGTTAAC-TGCTCGACACGAAATACGGGTTCTCCA 657 * * * * * ** * * * consensus_9701#0 TTC-GATAGGAATCGCTAATTTTTTAAACCTATATATGCGGATAGACCCGACTNTGCATC 772 consensus_9701#2 TTCAGACCACACTTCCTGATGTTTTAAGTAATAATGCATC-------------------- 499 consensus_9701#1 CAAAGACCACATACAGGAAGTCTCTCCTCCTGTTCACACAAATATGATAAGTTTT-TATC 716 ** * * * * consensus_9701#0 GAAAGGACTATCATCCCATTAATAGTATTAACATGGTATGAAGTTNTATGCATCCAGTAT 832 consensus_9701#2 ------------------------------------------------------------ consensus_9701#1 TGGAAGCTTATCTGAACCTAATTGCGCTGAAGACTATCTGATTATTGTGGCCAACCATCT 776 consensus_9701#0 ACTCTGCATTGTTTTTACAACAGTTTTTATCTGTTTACTNTTATTATCATCAAATGGTTT 892 consensus_9701#2 ------------------------------------------------------------ consensus_9701#1 TTTCAGACATTTCTCTAATACTTGTTTGAATTTCGCGAGCAGATA--------------- 821 consensus_9701#0 TTCTTATTTAGAAATAGAA 911 consensus_9701#2 ------------------- consensus_9701#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||