These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1051 fasta sequence [GAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTTATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAAATGACTAAGATGTTAGACCTGTTAGAGGACTTTTTAGATTCTGAAGGTTATAAATTTGAAAGGATCGATGGTGCAGTTACAGGACAGCTTCGTCAAGATGCTATAGACCGTTTTAATGCCCCTGATTCTCTCTCCTTTGCGTTTTTATTATCCACCAGGGCAGGAGGTCTAGGCATAAATTTAGCCTCCGCAGATACAGTCATCATATATGATTCCGATTGGAACCCACATAATGACATCCAAGCATTTTCTCGTGCCCATCGTATCGGTCAGTCCAATAAAGTTATGATTTATCGGTTTGTTACTCGTGGAACAGTTGAAGAACGTGTTACACAAGTAGCTAAAAAGAAAATGATGCTGACTCATTTAGTTGTTCGTCCTGGTTTAGGCGGTAAAGGTTCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGGAACTGAAGATCTGTTCAAGGAAGGCGAAGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATTGGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTCCTTCAAAGTTGCTCATTATGAAAAGAAAAGAGTTATTGAAGAAGAAGATGATGAATCGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAACGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAGCTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAACTACT] [-] EMBL CD196208 [GAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTTATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAAATGACTAAGATGTTAGACCTGTTAGAGGACTTTTTAGATTCTGAAGG ] [+] EMBL CD113483 [ AATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTTATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAAATGACTAAGATGTTAGACCTGTTAGAGGAGTTTTTAGATTCTGAAGGTTATAAATTTGAAAGGATCGATGGTGCAGTTACAGGACAGCTTCGTCAAGATGCTATAGACCGTTTTAATGCCCCTGATTCTCTCTCCTTTGCGTTTTTATTATCCACCAGGGCAGGAGGTCTAGGCATAAATTTAGCCTCCGCAGATACAGTCATCATATATGATTCCGATTGGAACCCACATAATGACATCCAAGCATTTTCTCGTGCCCATCGTATCGGTCAGTCCAATAAAGTTATGATTTATCGGTTTGTTACTCGTGGAACAGTTGAAGAACGTGTTACACAAGTAGCTAAAAAGAAAATGATGCTGACTCATTTAGTTGTTCGTCCTGGTTTAGGCGGTAAAGGTTCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGG ] [+] EMBL CD088156 [ TCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGGAACTGAAGATCTGTTCAAGGAAGGCGAAGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATTGGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTCCTTCAAAGTTGCTCATTATGAAAAGAAAAGAGTTATTGAAGAAGAAGATGATGAATCGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAACGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAGCTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAACTACT] [+] EMBL CD088146 [ TCATGTCAAATGTCCAAAAAAGAACTGGATGATATTCTTAAATTTGGAACTGAAGATCTGTTCAAGGAAGGCGAAGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATTGGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTCCTTCAAAGTTGCTCATTATGAAAAGAAAGGAGTTATTGAAGAAGAAGATGATGAATCGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAACGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAGCTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAATTACT] [+] EMBL CD088161 [ TCATGTCAAATGTCCAAAAACGAACTGGACGATATTCTTAAATTTGGAACTGAAGATCTGCTCAAGGATCGCGAAGAGAGCATGGAAGATGAACACACTATCGCTTATGATGATGCTGCTATTGAGCGCTTATTGGATCGTAGCCAGTAAGGGTTAGAAGAAGAAGCTTTAGAAATGAACGACTATC ] consensusID : consensus_9705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence [GAGGCCATAATTCGGCACGAGGGTCATTGTCGTGGTCCTTTCCTTGTTGCCGCTCCACTCTCAACAATTATTAACTGGGAGCGTGAATTCGAGTTTTGGGCTCCAGATCTTTATGTAGTCTCTTACATTGGCGATAAAGACTCACGAACAGTTATAAGAGAGCACGAATTCTCATTCGATGAGGGTGCTGTCCGTGGTGGTGCTAAAGCTATGAAAATGAGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTA--CTTAGGCGTCTTAAGGCTGATGTGCTACAGGACATGCCATCCAAAGGTGAATTCATCGTCAGAGTAGAGCTTAGTCCTATGCAAAAGCGTTACTATAAATTTATACTTACTCGTAACTTCGAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTA-TCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTTAAATGAACAGCGTGCGTTATAAAA] [+] EMBL CD081700 [GAGGCCATAATTCGGCACGAGGGTCATTGTCGTGGTCCTTTCCTTGTTGCCGCTCCACTCTCAACAATTATTAACTGGGAGCGTGAATTCGAGTTTTGGGCTCCAGATCTTTATGTAGTCTCTTACATTGGCGATAAAGACTCACGAACAGTTATAAGAGAGCACGAATTCTCATTCGATGAGGGTGCTGTCCGTGGTGGTGCTAAAGCTATGAAAATGAGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTA CTTAGGCGTCTTAAGGCTGATGTGCTACAGGACATGCCATCCAAAGGTGAATTCATCGTCAGAGTAGAGCTTAGTCCTATGCAAAAGCGTTACTATAAATTTATACTTACTCGTAACTTCGAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTA TCAATATCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGTATGCCCAATGGTTAAATGAACAGCGTGCGTTATAAAA] [+] EMBL BG930927 [ GAGGGTGCTGTCCGTGGTGGTGCTAAAGCTATAAAAATGAGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTA CTTAGGCGTCTTAAGGCTGATGTGCTACAGa ] [+] EMBL CD130643 [ TACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAAATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAGAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAGAAGTTCAACGATATGCAAGGATTCTTAGATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACGATATGCTTGGTCAGCACTTACNCTTAGGCGTCTTAAGGCTGATATGCTACAGGACATGCCATCCAAAGGTGAATTCATCGTCAGAGTAGAGCTTAGTCCTATGCAAAAGCGTTACTATAAATTTATACTTACTCGNTACTTCGNAGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATTNAATATCATG ] [+] EMBL CD063212 [ TTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATTGATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATGAGGCTCATCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGGATATAAGTTATTGCTAACAGGAACTCCTCTTCAAAATAATCTAAAAGAACTTTTCCACCTACTACATTTTATGACCCCTGAG ] consensusID : consensus_9705#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 536 fasta sequence [GTTCTGCTATGATTATTTGAAGAGGAGTTCCTGTTAGCAATAACTTATATCCAATTTTATAGGTTGTTAAGATACGGAAAAACTTTGACTGATTATTTTTTAGTCGATGAGCCTCATCTACAACAAGAACTTCCCAATCTATGGAGCCTAGTAAAGCTTGATCAATACTAATTAACTCATAACTTGTTAAAAGTACATGAAATCTGACTGAAGTACCGGTTCTCATTTTCATAGCTTTAGCACCACCACGGACAGCACCCTCATCGAATGAGAATTCGTGCTCTCTTATAACTGTTCGTGAGTCTTTATCGCCAATGTAAGAGACTACATAAAGATCTGGAGCCCAAAACTCGAATTCACGCTCCCAGTTAATAATTGTTGAGAGTGGAGCGGCAACAAGGAAAGGACCACGACAATGACCTTCTTTGTACAGAGAATAAAGGAAAGCAATTGTTTGGATCGTTTTCCCCAAACCCATCTCATCAGCTAAGATTGTGTCGATTTTGTTACCGAAGGAAAACCTAAGCCAATTGACA] [+] EMBL CD068185 [GTTCTGCTATGATTATTTGAAGAGGAGTTCCTGTTAGCAATAACTTATATCCAATTTTATAGGTTGTTAAGATACGGAAAAACTTTGACTGATTATTTTTTAGTCGATGAGCCTCATCTACAACAAGAACTTCCCAATCTATGGAGCCTAGTAAAGCTTGATCAATACTAATTAACTCATAACTTGTTAAAAGTACATGAAATCTGACTGAAGTACCGGTTCTCATTTTCATAGCTTTAGCACCACCACGGACAGCACCCTCATCGAATGAGAATTCGTGCTCTCTTATAACTGTTCGTGAGTCTTTATCGCCAATGTAAGAGACTACATAAAGATCTGGAGCCCAAAACTCGAATTCACGCTCCCAGTTAATAATTGTTGAGAGTGGAGCGGCAACAAGGAAAGGACCACGACAATGACCTTCTTTGTACAGAGAATAAAGGAAAGCAATTGTTTGGATCG ] [+] EMBL CD188041 [ GGTTCTCATTTTCATAGCTTTAGCACCACCACGGACAGCACCCTCATCGAATGAGAATTCGTGCTCTCTTATAACTGTTCGTGAGTCTTTATCGCCAATGTAAGAGACTACATAAAGATCTGGAGCCCAAAACTCGAATTCACGCTCCCAGTTAATAATTGTTGAGAGTGGAGCGGCAACAAGGAAAGGACCACGACAATGACCTTCTTTGTACAGAGAATAAAGGAAAGCAATTGTTTGGATCGTTTTCCCCAAACCCATCTCATCAGCTAAGATTGTGTCGATTTTGTTACCGAAGGAAAACCTAAGCCAATTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9705#0 GAGGCTCTGAGTTGTCGCAGTGGAGGTTCTCAAGTTTCTCTTATCAATATCATGATGGAC 60 consensus_9705#1 ---------------------------------------------GAGGCCATAATTCGG 15 consensus_9705#2 ------------------------------------------------------------ consensus_9705#0 CTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCATCTGCGGCTGAGGAGGCACAGCGT 120 consensus_9705#1 CACGAGGGTCATTGTCGTGGTCCTTTCCTTGTTGCCGCTCCACTCTCA-----ACAATTA 70 consensus_9705#2 ------------------------------------------------------------ consensus_9705#0 ATGCCCAATGGTGCTTATGAAGGTGTCGGACTACGGAAAGGCTCTGGGAAACTGGAACTT 180 consensus_9705#1 TTAACTGGGAGCGTGAATTCGAGTTTTGGGCTCCAGATC--TTTATGTAGTCTCTTACAT 128 consensus_9705#2 ------------------------------------------------------------ consensus_9705#0 ATGAGCAAAATGCTGCGCAAATTGTATGAAACAAAACACCGTGTGTTGATTTTCTCTCAA 240 consensus_9705#1 TGGCGATAAAGACT-CACGAACAGT-TATAAGAGAGCAC--------GAATT---CTCAT 175 consensus_9705#2 ------------------------------------------------------------ consensus_9705#0 ATGACTAAGATGTTAGACCTGTTAGAGGACTTTTTAGATTCTGAAGGTTATAAATTTGAA 300 consensus_9705#1 TCGATGAGGGTGCTGTCCGTGGTGGTG--------------CTAAAGCTATGAAAATG-- 219 consensus_9705#2 -----------------------------------------GTTCTGCTATGATTATT-- 17 * *** * * consensus_9705#0 AGGATCGATGGTGCAGTTACAGGACA-GCTTCGTCAAGATGCTATAGACCGTTT--TAAT 357 consensus_9705#1 AGAACCGGTACTTCAGTCAGATTTCATGTACTTTTAACAAGTTATGAGTTAATTAGTATT 279 consensus_9705#2 TGAAGAGGAGTTCCTGTTAGCAATAACTTATATCCAA--TTTTATAGGTTGTTAAGATAC 75 * * * * * ** * * ** *** * consensus_9705#0 GCCCCTGATTCTCTCTCCTTTGCGTTTTTATTATCCACCAGGGCAGGAGGTCTAGGCATA 417 consensus_9705#1 GATCAAGCTTTACTAGGCTCCATAGATTGGGAAGTTCTTGTTGTAGATG----AGGCTCA 335 consensus_9705#2 GGAAAAACTTT-------------GACTGATTATTTTTTA--GTCGATG----AGCCTCA 116 * ** * * * * * ** * * consensus_9705#0 AATTTAGCCTCCGCAGATACAGTCATCATATATGATTCCGATTGGAACCCACATAATGAC 477 consensus_9705#1 ---TCGACTAAAAAATAATCAGTCAAAGTTTTTCCGTATCTTAACAACCTATAAAATTGG 392 consensus_9705#2 ------TCTACAACAAGAACT-TCCCAATCTATGGAGCCTAGTAAAGCTTGATCAATACT 169 * * * ** * * * * * *** consensus_9705#0 ATCCAAGCATTTTCTCGTGCCCATCGTATCGGTCAGTCCAATAAAGTTATGATTTATCGG 537 consensus_9705#1 ATATAAGTTATTGCTAACAGGAAC--TCCTCTTCAAAATAATCTAGA-AGAACTTTTCCA 449 consensus_9705#2 AATTAACTCATAACTTGTTAAAAG---TACATGAAATCTGACTGAAGTACCGGTTCTCAT 226 * ** * ** * * * * * ** ** consensus_9705#0 TTTGTTAC-TCGTGGAACAGTTGAAGAACGTGTTACACAAGTAGCTAAAAAGAAAATGAT 596 consensus_9705#1 CCTACTACATTTTATGACCCCTGAGAA----GTT---CAACGATATGCAAGGATTCTTAG 502 consensus_9705#2 TTTCATAG-CTTTAGCACCACCACGGA----------CAGCACCCTCATCGAATGAGAAT 275 * ** * ** * ** * * * consensus_9705#0 GCTGACTCATTTAGTTGTTCGTCCTGGTTTAGGCGGTAAAGGTTCATGTCAAATGTCCAA 656 consensus_9705#1 ATGAGTTCGCTGATATATCAAAAGAAGAACAAGTAAAAAAACTTCACG--ATATGCTTGG 560 consensus_9705#2 TCGTGCTCTCTTATA-------------ACTGTTCGTGAGTCTTTATCGCCAATGT---- 318 ** * * * ** * *** consensus_9705#0 AAAAGAACTGGATGATATTCTTAAATTTG--GAACTG-AAGATCTGTTCAAGGAAGGCGA 713 consensus_9705#1 TCAGCACTTACTTAGGCGTCTTAAGGCTGATGTGCTACAGGACATGCCATCCAAAGGTGA 620 consensus_9705#2 -AAGAGACTACATAAAGATCTGGAGCCCA--AAACTCGAATTCACGCTCCC----AGTTA 371 * * * *** * ** * * * * consensus_9705#0 AGAGAGCATGGAAGATGAACACACTATCGTTTATGATGATGCTGCTATTGAGCGTTTATT 773 consensus_9705#1 ATTCATCGTCAGAGTAGAGCTTA--GTCCTATGCAAAAGCGTTACTAT-AAATTTATACT 677 consensus_9705#2 ATAATTGTTGAGAGTGGAGC-----GGCAACAAGGAAAGGACCACGACAATGACCTTCTT 426 * * ** ** * * * * * * * consensus_9705#0 GGATCGTAGCCAGCAAGGGTTAGAAGAAAAAGCTTTAGAAATGAACGACTATCTAACCTC 833 consensus_9705#1 TACTCGTAACTT-CGAGGCTCTGA-------GTTGTCGCAGTGGA-GGTTCTCAAGTTTC 728 consensus_9705#2 TGTACAGAGAATAAAGGAAAGCAA--------TTGTTTGGATCGT-TTTCCCCAAACCCA 477 * * * * * * * * * consensus_9705#0 CTTCAAAGTTGCTCATTATGAAAAGAAAAGAGTTATTGAAGAAGAAGATGATGA----AT 889 consensus_9705#1 TCTTATCAATA-TCATGATGGACCTCAAGAAGTGTTGCAATCACCCTTTCCTTTTTCCAT 787 consensus_9705#2 TCTCATCAGC---TAAGATTGTGTCGATTTTGTTACCGAAGGAAAACCTAAGCCA---AT 531 * * * ** * ** ** * * ** consensus_9705#0 CGGAGGATGAAGATGAAAATCGTGAAGTTATCAAACAGGAACTTGATCCAGCAGATCCAA 949 consensus_9705#1 CTGCGGCTGAGGAGGCACAGCGTA----TGCCCAATGG----TTAAATGAACAG----CG 835 consensus_9705#2 TGACA------------------------------------------------------- 536 consensus_9705#0 CGTATTGGGAAAAGTTATTGCGCCATCACTTCGAACAAGCTCAAGAAGATCAAGCTCGAG 1009 consensus_9705#1 TGCGTTATAAAA------------------------------------------------ 847 consensus_9705#2 ------------------------------------------------------------ consensus_9705#0 CTCTTGGGAAAGGTAAAAGGGTTCGAAAACAAGTTAACTACT 1051 consensus_9705#1 ------------------------------------------ consensus_9705#2 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||