Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9717 cluster # 9717       Sequences # 11       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9717#0 length = 448 sequences # 11  
consensusID : consensus_9717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 448
fasta sequence 
                              [TGTTATTTGTTGCATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAAAGATGAATAACACAAGAGCATGTTACTTTTCTAAATATGAAAACGAAGCTTTATAATTAAATAAATCAT]

[+] EMBL BF936649             [TGTTATTTGTTGCATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAAAGATGAATAACACAAGAGCATGTTACTTTTCTAAATATGAAAACGAAGCTTTATAATTAAATAAATCAT]
[-] EMBL CD140246             [          TGCATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATCCTGGGAAAATTACTTAGACCGAAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCAGGTCTACGTTAAGTGAGCAGATTGCTAAACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAAA                                                                    ]
[-] EMBL CD140270             [            CATGATCTGTACTGCTGTTCTCTAACTGTGGATCCCACGTGTGACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGGCTAATGTATAATCATTATTCTactgaaaa                                                                              ]
[+] EMBL CD140252             [             ATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTCATCAGTCTACTGTAAcg                                                                   ]
[+] EMBL CD140312             [             ATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGCCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAA                                                                     ]
[+] EMBL CD140153             [             ATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAA                                                                     ]
[+] EMBL CD140305             [             ATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACCAGGA                                                                                                           ]
[-] EMBL CD196329             [              TGATCTGTACTGCTGTCNTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCCTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTactgaaaa                                                                              ]
[-] EMBL CD140118             [              TGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTactgaaaa                                                                              ]
[-] EMBL CD140324             [              TGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAAA                                                                    ]
[-] EMBL CD140170             [                            GTTCTCTAACTGTTGATTCCACGTGTTACAAAGATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTACCAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCTGTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGCAATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTAAAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATTCTTTATCAGTCTACTGAAAA                                                                    ]




>consensus_9717#0
TGTTATTTGTTGCATGATCTGTACTGCTGTTCTCTAACTGTTGATTCCACGTGTTACAAA
GATTCTGGGAAAATTACTTAGACCGTAGTGTCGTGGTCCGGGCAGATATTAAATTTCTAC
CAAATAAATGAGCATCAAACCATGTCTACGTTAAGTGAGCAGATTGCTATACAAGAAGCT
GTCCAAAACGAATTGCAACAAACTGTTTTCTCACAGCCTATATACGAACGTTTTGGTGGC
AATATCTTTTTTCCTGTTTCTCGTACAAATGCTTTAATCCAATGTAAAGAAAAACTTTTA
AAGCTGAGTAAAAATTCATCCGAATTAAAAACGGACAAGGACTAATGTATAATCATTATT
CTTTATCAGTCTACTGAAAAGATGAATAACACAAGAGCATGTTACTTTTCTAAATATGAA
AACGAAGCTTTATAATTAAATAAATCAT

clustalw multiple alignements is not computed in this case
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)