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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 912 fasta sequence
[TCCGATTTTTAGTTGGATCTCAGTCTCTGAAGCCACAAGGTAGTCAGATCACTTTGGTAACACTCGTGGAGTCATTAGATATCGACTTGAAAAAACAGACTTTTGCACATCCGAATGGAGAGGTTACTTCATTGGTTACATTGGCATCTAAACCAGATTGCTTTATATCAGTGTCAGCATCATATTCAAATGAACGACCAGAGCTTCGTAATTGTGCTCGACTTTGGAGAATACCTAATCTTAACGAAACTGTGTTGGACGATGCGATGATTGAATCAAATCTATCGAAATCACCAGTAGATAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAACTACACTACCATTAGATAAATATCATAGCATCAAAAGGATTACATCACATCCATCTAGTACGTGCTCTGATTTAGCCTGTGTTGTCGGACCACCTGTTGAAATGCCTGGTTCAGCTGCTTATTCTTCCCTTGTAACCACTGCAACCACAAGCTATTTAGTCATACTTCAAGCTCCATCAAATTCAAATTCTAGTGATTATCAAATCAGTACAAGTGTACAGTTATATTTACCACCCTCATCTCCAAGTGATAATTTACGTACAAATATGAAGTCATCAACTAGTTGTTTATCGACTATTGCATCACCTAACGCTATTCGTTGGTCTCCACATGAACATTCAAATCAACTTGCGATAGCTTTTGATAATGGTGTATTAGGATGGGATGTTCGATGTATGAAGCCTAGTTTTTGGATGGAAAATGCCCATTGGCCATGTGTCAGAGACATTGATTACAATCCTCATCGTCCTAATCTGTTAGTATCTGGTGGAGACGATGGAATCATGAGACTTTGGGATCTTCGCTATTTACGCACAAGATATCGCTGCCTGTCTACTACTGCCGCTG]
[+] EMBL CD195312 [TCCGATTTTTAGTTGGATCTCAGTCTCTGAAGCCACAAGGTAGTCAGATCACTTTGGTAACACTCGTGGAGTCATTAGATATCGACTTGAAAAAACAGACTTTTGCACATCCGAATGGAGAGGTTACTTCATTGGTTACATTGGCATCTAAACCAGATTGCTTTATATCAGTGTCAGCATCATATTCAAATGAACGACCAGAGCTTCGTAATTGTGCTCGACTTTGGAGAATACCTAATCTTAACGAAACTGTGTTGGACGATGCGATGATTGAATCAAATCTATCGAAATCACCAGTAGATAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAA ]
[+] EMBL CD195360 [TCCGATTTTTAGTTGGATCTCAGTCTCTGAAGCCACAAGGTAGTCAGATCACTTTGGTAACACTCGTGGAGTCATTAGATATCGACTTGAAAAAACAGACTCTTGCACATCCGAATGGAGAGGTTACTTCATTGGTTACATTGGCATCTAAACCAGATTGCTTTATATCAGTGTCAGCATCATATTCAAATGAACGACCAGAGCTTCGTAATTGTGCTCGACTTTGGAGAATACCTAATCTTAACGAAACTGTGTTGGACGATGCGATGATTGAATCAAATCTATCGAAATCACCAGTAGATAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAACAACACTACCATTAGATAAATATCATAGCATCAAAAGGATTACATCACATCCATCTAGTACGTGCTCTGATTTAGCCTGTGTTGTCGGACCACCTGTTGAAATGCCTGGTTCAGCTGCTTATTCTTCCCTTGTAACCACTGCAACCACAAGCTATNTA ]
[+] EMBL CD195116 [TCCGATTTTTAGTTGGATCTCAGTCTCTGAAGCCACAAGGTAGTCAGATCACTTTGGTAACACTCGTGGAGTCATTAGATATCGACTTGAAAAAACAGACTTTTGCACATCCGAATGGAGAGGTTACTTCATTGGTTACATTGGCATCTAAACCAGATTGCTTTATATCAGTGTCAGCATCATATTCAAATGAACGACCAGAGCTTCGTAATTGTGCTCGACTTTGGAGAATACCTAATCTTAACGAAACTGTGTTGGACGATGCGATGATTGAATCAAATCTATCGAAATCACCAGTAGATAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAACTACACTACCATTAGATAAATATCATAGCATCAAAAGGACTACATCACATCCATCTAGTACGTGCTCTGATTTAGCCTGTGTTGTCGGACCACCTGTTGAAATGCCTGGTTCAGCTGCTTATTCTTCCCTTGnn ]
[-] EMBL CD140203 [ ATGGAGAGGTTACTTCATGGGTTACATTGGCATCTAAACCAGATTGCTTTATATCAGTGTCAGCATCATATTCAAATGAACGACCAGAGCTTCGTAATTGTGCTCGACTTTGGAGAATACCTAATCTTAACGAAACTGTGTTGGACGATGCGATGATTGAATCAAATCTATCGAAATCACCAGTAGATAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAACTACACTACCATTAGATAAATATCATAGCATCAAAAGGATTACATCACATCCATCTAGTACGTGCTCTGATTTAGCCTGTGTTGTCGGACCACCAGTTGAAATGCCTGGTTCAGCTGCTTATTCTTCCCTTGTAACCACTGCAACCACAAGCTATTTAGTCATACTTCAAGCTCCATCAAATTCAAATTCTAGTGATTA ]
[-] EMBL CD192270 [ TCGAAATCACCAGTAGATAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAACTACACTACCATTAGATAAATATCATAGCATCAAAAGGATTACATCACATCCATCTAGTACGTGCTCTGATTTAGCCTGTGTTGTCGGt ]
[+] EMBL CD083573 [ ATCACATCCATCTAGTACGTGCTCTGATTTAGCCTGTGTTGTCGGACCACCTGTTGAAATGCCTGGTTCAGCTGCTTATTCTTCCCTTGTAACCACTGCAACCACAAGCTATTTAGTCATACTTCAAGCTCCATCAAATTCAAATTCTAGTGATTATCAAATCAGTACAAGTGTACAGTTATATTTACCACCCTCATCTCCAAGTGATAATTTACGTACAAATATGAAGTCATCAACTAGTTGTTTATCGACTATTGCATCACCTAACGCTATTCGTTGGTCTCCACATGAACATTCAAATCAACTTGCGATAGCTTTTGATAATGGTGTATTAGGATGGGATGTTCGATGTATGAAGCCTAGTTTTTGGATGGAAAATGCCCATTGGCCATGTGTCAGAGACATTGATTACAATCCTCATCGTCCTAATCTGTTAGTATCTGGTGGAGACGATGGAATCATGAGACTTTGGGATCTTCGCTATTTACGCACAAGATATCGCTGCCTGTCTACTACTGCCGCTG]
[-] EMBL CD120332 [ TATATTTACCACCCTCATCTCCAAGTGATAATTTACGTACAAATATGAAGTCATCAACTAGTTGTTTATCGACTATTGCATCACCTAACGCTATTCGTTGGTCTCCACATGAACATTCAAATCAACTTGCGATAGCTTTTGATAATGGTGTATTAGGATGGGA ]
consensusID : consensus_9729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 367 fasta sequence
[GCTTCAGAGACTGAGATCCAACTAAAAATCGGACCTCATCAGACTCTGCGTGACTTATTGCATATCGCAAAATCTCTTGTTCATCTCGATCTTCTTCTACTAGTCGATTGAGGTTTTCAAGACTGGAATCCTTAAGAGATCCATACAACCCGACTAAACATCGTACATTCGGCTGAACAGCGACTCCTGATGACGGCGGAAAGCTACTTAGCTTCATTTATGACAGGAAAGTAAGGACTTGGTTGGCGGAAGCCGATAGAACAAAGAAGATTCTTTAATACTAAAGTAAAAAATGTGAAAAATAAACAAGCAAAAAACAACATAATTATTAGAGCATATAGCACAGCCTACAGCTGGTTCAAGCCAC]
[+] EMBL CD181808 [GCTTCAGAGACTGAGATCCAACTAAAAATCGGACCTCATCAGACTCTGCGTGACTTATTGCATATCGCAAAATCTCTTGTTCATCTCGATCTTCTTCTACTAGTCGATTGAGGTTTTCAAGACTGGAATCCTTAAGAGATCCATACAACCCG ]
[-] EMBL CD184509 [ GATCCAACTAAAAATCGGACCTCATCAGACTCTGCGTGACTTATTGCATATCGCAAAATCTCTTGTTCATCTCGATCTTCTTCTACTAGTCGATTGAGGTTTTCAAGACTGGAATCCTTAAGAGATCCATACAACCCGACTAAACATCGTACATTCGGCTGAACAGCGACTCCTGATGACGGCGGAAAGCTACTTAGCTTCATTTATGACAGGAAAGTAAGGACTTGGTTGGCGGAAGCCGATAGAACAAAGAAGATTCTTTAATACTAAAGTAAAAAATGTGAAAAATAAACAAGCAAAAAACAACATAATTATTAGAGCATATAGCACAGCCTACAGCTGGTTCAAGCCAC]
[-] EMBL CD190972 [ GATCCAACTAAAAATCGGACCTCATCAGACTCTGCGTGACTTATTGCATATCGCAAAATCTCTTGTTCATCTCGATCTTCTTCTACTAGTCGATTGAGGTTTTCAAGACTGGAATCCTTAAGAGATCCATACAACCCGACTAAACATCGTACATTCGGCTGAACAGCGACTCCTGATGACGGCGGAAAGCTACTTAGCTTCATTTATGACAGGAAAGTAAGGACTTGGTTGGCGGAAGCCGATAGAACAAAGAAGATTCTTTAATACatg ]
[+] EMBL CD170307 [ GGCGGAAAGCTACTTAGCTTCATTTATGACAGGAAAGTAAGGACTTGGTTGGCGGAAGCCGATAGAACAAAGAAGATTCTTTAATACTAAAGTAAAAAATGTGAAAAGTAAACAAGCAAAAAACAACATAATTATTAGAGCATATAGCACAGCCTACAGCTGGTTCAAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9729#0 TCCGATTTTTAGTTGGATCTCAGTCTCTGAAG-CCACAAGGTAGTCAGATCACTTTGGTA 59
consensus_9729#1 ----------------GCTTCAGAGACTGAGATCCAACTAAAAATCGGACCTCATCAG-- 42
**** **** *** * ** ** * * * *
consensus_9729#0 ACACTCGTGGAGTCATTAGATATCGACTTGAAAAAACAGACTTTTGCACATCCGAATGGA 119
consensus_9729#1 ACTCTGCGTGACTTATTGCATATCGC------AAAAT---CTCTTGTTCATCTCGATC-- 91
** ** ** * *** ****** **** ** *** **** **
consensus_9729#0 GAGGTTACTTCATTGGTTACATTGGCATCTAAACCAGATTGCTTTATATCAGTGTCAGCA 179
consensus_9729#1 ----TTCTTCTACTAGTCG-ATTGAGGTTTTCA--AGACTGGAATCCTTAAGAGATC-CA 143
** * * * ** **** * * * *** ** * * ** * **
consensus_9729#0 TCATATTCAAATGAACGACCAGAGCTTCGTAATTGTGCT-CGACTTTGGAGAATACCTAA 238
consensus_9729#1 TACAACCCGACTAAAC-ATCGTACATTCG--GCTGAACAGCGACTCCTGATGACGGCGGA 200
* * * * * *** * * * **** ** * ***** ** * * *
consensus_9729#0 TCTTAACGAAACTGTGTTGGACGATGCGATGATTGAATCAAATCTATCGAAATCACCAGT 298
consensus_9729#1 AAGCTACTTAGCTTCATTT-ATGACAGGAAAGTAAGGACTTGGTTGGCGGAA--GCCGAT 257
** * ** ** * ** ** * * * ** ** ** *
consensus_9729#0 AGA-TAACAATAATTCATCTACACCGAATAATTCATTGGATTATATAACTACACTACCAT 357
consensus_9729#1 AGAACAAAGAAGATTCTTTAATACTAAAGTAAAAAATGTGAAAAATAAACAAGCAAAAAA 317
*** ** * **** * * ** ** * * ** * **** * * * *
consensus_9729#0 TAG-ATAAATATCATAGCATCAAAAGGATTACATCACATCCATCTAGTACGTGCTCTGAT 416
consensus_9729#1 CAACATAATTATTAGAGCAT-------ATAGCACAGCCTACAGCTGGTTCAAGCCAC--- 367
* **** *** * ***** ** ** * * ** ** ** * **
consensus_9729#0 TTAGCCTGTGTTGTCGGACCACCTGTTGAAATGCCTGGTTCAGCTGCTTATTCTTCCCTT 476
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 GTAACCACTGCAACCACAAGCTATTTAGTCATACTTCAAGCTCCATCAAATTCAAATTCT 536
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 AGTGATTATCAAATCAGTACAAGTGTACAGTTATATTTACCACCCTCATCTCCAAGTGAT 596
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 AATTTACGTACAAATATGAAGTCATCAACTAGTTGTTTATCGACTATTGCATCACCTAAC 656
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 GCTATTCGTTGGTCTCCACATGAACATTCAAATCAACTTGCGATAGCTTTTGATAATGGT 716
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 GTATTAGGATGGGATGTTCGATGTATGAAGCCTAGTTTTTGGATGGAAAATGCCCATTGG 776
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 CCATGTGTCAGAGACATTGATTACAATCCTCATCGTCCTAATCTGTTAGTATCTGGTGGA 836
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 GACGATGGAATCATGAGACTTTGGGATCTTCGCTATTTACGCACAAGATATCGCTGCCTG 896
consensus_9729#1 ------------------------------------------------------------
consensus_9729#0 TCTACTACTGCCGCTG 912
consensus_9729#1 ----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||