These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [TTAGTAGTATTCTAGAACTTTCAGTAAAAACTCAAGGACTCTTAAATTACTATAAAATCCCTATATTTTCTGTACATGAATGAACCCTGTAGTAAAGTGCTCCCCACACACTTTGTGCCTTTTCTCTGGTCTTCAAGTCGGTGTATAGTTCCAGCTCGGGGGTACGGAACTAGCTTAGGGAAACGAATATAGCGTCCAATCGGCCAGACGTGACACTTGCTTACCTACGCCTTTTACCCCCAATGGAGCACACGTCACTGGTCGGTATTCTTCAACTCAGTCTGTCCTGGGCCTTCCTTTCTAGTTCTATCTGTCACAGTTACCTTTCTGACTGCGTTGTTTATAACTAATTGAATACAATAAATGTATAATATTTTTGACGTAGGAGAAGTTAAGAGCTAATTACTCGTAAAGGCTTTGTAGTTACTGATCGAAATCTTGTCACAATCCAAATCTTATTTTCAATTAATCAACACAGC] [+] EMBL CD187315 [TTAGTAGTATTCTAGAACTTTCAGTAAAAACTCAAGGACTCTTAAATTACTATAAAATCCCTATATTTTCTGTACATGAATGAACCCTGTAGTAAAGTGCTCCCCACACACTTTGTGCCTTTTCTCTGGTCTTCAAGTCGGTGTATAGTTCCAGCTCGGGGGTACGGAACTAGCTTAGGGAAACGAATATAGCGTCCAATCGGCCAGACGTGACACTTGCTTACCTACGCCTTTTACCCCCAATGGAGCACACGTCACTGGTCGGTATTCTTCAACTCAGTCTGTCCTGGGCCTTCCTTTCTAGTTCTATCTGTCACAGTTACCTTTCTGACTGCGTTGTTTATAACTAATTGAATACAATAAATGTATAATATTTTTGACGTAGGAGAAGTTAAGAGCTAATTACTCGTAAAGGCTTTGTAGTTACTGATCGAAATCTTGTCACAATCCAAATCTTATTTTCAATTAATCAACACAGC] consensusID : consensus_9759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 471 fasta sequence [GTTGAAGTTGCACTAATTTGTGATAATAGTTAATTAATCACAGGTTATTTTTTGTGCTGAAATTATTCTCTATGAATACGCACAGAAAATACTTTAGTTGTTTAATTTCAACGTTTAAACTTGTTTTCATTAGTGATGAACAGTTCTATAGCTTCATTCGAATAGCATTTTACGATTTGAATGGAGTGCACGTCATTTAACATCTGGAGGAATGCACGGGATACAGTGGACAGGTAGGATGCAGCTTGACGATTTAGACTTCGCGGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGACCAGTGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGGGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCCAATTACACTTGACGGAGAAGCTTTGGAGGATGTGAAAACTTCTACATATCTGGGCAGCATCAT] [-] EMBL CD131005 [GTTGAAGTTGCACTAATTTGTGATAATAGTTAATTAATCACAGGTTATTTTTTGTGCTGAAATTATTCTCTATGAATACGCACAGAAAATACTTTAGTTGTTTAATTTCAACGTTTAAACTTGTTTTCATTAGTGATGAACAGTTCTATAGCTTCATTCGAATAGCATTTTACGATTTGAATGGAGTGCACGTCATTTAACATCTGGAGGAATGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCGGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGACCAGTGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGGGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCCAATTACACTTGACGGAGAA ] [+] EMBL CD086223 [ gGGAA GCGAGGGATACAGTGGACAGGTAGGACGCAGCTGGACGATTTAGACTTCGCAGATGATCTGGCTCTTCTAGCACATACGCAACAACAAATGCAGGAGAAGACGACCAGTGTAGCAACAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGGGAAAAGCAAGACTCTCTGATACAATACAGTATGCACCAATCGAATTACACTTGACGGAGAAGCTTTGGAGGATGTGAAAACTTCTACATATCTGGGCAGCATCAT] [-] EMBL CD182194 [ ACGGGATACAGTGGACAGGTAGGATGCAGCTAGACGATTTAGACTTCGCAGATGATCTGGTTCTTCTATCACAAACGCAACAACAAATGCAGAAGGAGACGACCAGTGTAGCAGCAGCCTAACCAGCAGTAGGTCTCAATATAAACAAAGGGAAAAGCAAGACTCTCCGATACAATACAA ] [+] EMBL CD202664 [ ATGCAGCTTGACGATTTAGACTTCGCGGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGACCAGTGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGGGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAA ] consensusID : consensus_9759#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [TTGGACTTGGTCGCATATTGAGAAAATCACCCAACTGCGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGCCGAAGGAAAAGAGGAAGACCAAAGAACACCTTACGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAGTAGGATAGAACTAGAAAGGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATTGGAAGTAACAGGCGTAATCAAGTATGTCTGGATAGTTCTTCATGGTTGGGATGACCCTGTAATTTTCTCGCAAGCGACATGACAAGCTCGTGAGTCATTAAGGAGCATTTCAACCAATCAGCGATTTATTAGAAGTTATGTGAAGTTATGTTACTAAAATAACGAGGATGAAAAAG] [+] EMBL CD069244 [TTGGACTTGGTCGCATATTGAGAAAATCACCCAACTGCGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGCCGAAGGAAAAGAGGAAGACCAAAGAACACCTTACGCCGAGAAATGGAGACAGACATGAGAAGAATGAACAAAAGTAGGATAGAACTAGAAAGGAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATTGGAAGTAACAGGCGTAATCAAGTATGTCTGGATAGTTCTTCATGGTTGGGATGACCCTGTAATTTTCTCGCAAGCGACATGACAAGCTCGTGAGTCATTAAGGAGCATTTCAACCAATCAGCGATTTATTAGAAGTTATGTGAAGTTATGTTACTAAAATAACGAGGATGAAAAAG] consensusID : consensus_9759#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [AAGTATATATACAGTTCTACTGTATAGGGCGGATACGTGGAGAACTACGAAAGCCATCATCCAGAAGATACAAGTAATTATTAACAGTTGTCTATGCAAGATACTTCGGATCCGTTGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACAAAATTCCAATGGAGGAAGAGATCAGGAAGAAACGCTGGAAGTGGATAGGATACACATTGAGGAAGTCACCCAACTGCGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGTCGAGAAATGGAGACAGACATGAGAAGAATGAATAAAAATTGGAAAGAACTA] [+] EMBL CD183369 [AAGTATATATACAGTTCTACTGTATAGGGCGGATACGTGGAGAACTACGAAAGCCATCATCCAGAAGATACAAGTAATTATTAACAGTTGTCTATGCAAGATACTTCGGATCCGTTGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACAAAATTCCAATGGAGGAAGAGATCAGGAAGAAACGCTGGAAGTGGATAGGATACACATTGAGGAAGTCACCCAACTGCGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGTCGAGAAATGGAGACAGACATGAGAAGAATGAATAAAAATTGGAAAGAACTA] consensusID : consensus_9759#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [TGTATCTTCTGGATAATGGCTTTCGTAGTTCTCCACGTCTCCGCCCCATACAGTAGAACTGTCTTGACATTTGTATTGAAAATTCTGACTTTGGTGTTGGTTGACAGACAGTTGTTTTGAGTTCCTGATGTTTTTCAGTTGGTAATATGCTGCTCTTGCTTTGCCGATCCTCGCCCTCACATCTGCATCTGATCCACCGTGTTCATCAATGTTGCTGCCCAGATATGTAAAAGTCTTTACATATATTTCAAAGCTTCTCCGTGAAGTGTGATTTGATTGGTGCATGTTGTATTGTATCGGAGAGTCTTGCTTTTCCGTTTGTTTATATTGATACCTACTGCTGCTACACTGGT] [+] EMBL CD093340 [TGTATCTTCTGGATAATGGCTTTCGTAGTTCTCCACGTCTCCGCCCCATACAGTAGAACTGTCTTGACATTTGTATTGAAAATTCTGACTTTGGTGTTGGTTGACAGACAGTTGTTTTGAGTTCCTGATGTTTTTCAGTTGGTAATATGCTGCTCTTGCTTTGCCGATCCTCGCCCTCACATCTGCATCTGATCCACCGTGTTCATCAATGTTGCTGCCCAGATATGTAAAAGTCTTTACATATATTTCAAAGCTTCTCCGTGAAGTGTGATTTGATTGGTGCATGTTGTATTGTATCGGAGAGTCTTGCTTTTCCGTTTGTTTATATTGATACCTACTGCTGCTACACTGGT] consensusID : consensus_9759#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 323 fasta sequence [GATTAATTAGAAGTTATGTGAAGTTATGTTACTAAAATAACGAAAATGGAAAAGTCACATGTGGAGATCCTGAATGGCTGATTTATACACTGCTACTATGTTTAGCAGTGTTCTAGAACTTTCAGTAAAACTCAAGGACTCTTAAATTACTATAAAATCCCCATATTTTCTGTACATAAATGAACCCTGTAGTAAAGTGCTTCCCTCACACTTTGTGCCTTTTCTCTGGTCTTCAAGTCGGTGTATAGTTCTAGCCTGGGGGCACGCCACTAGCTTAGGGAAGCGAATATAGCGTTCACAATCGGCCAGACGTAACACCTATT] [+] EMBL CD167068 [GATTAATTAGAAGTTATGTGAAGTTATGTTACTAAAATAACGAAAATGGAAAAGTCACATGTGGAGATCCTGAATGGCTGATTTATACACTGCTACTATGTTTAGCAGTG ] [-] EMBL CD167056 [ ATTAATTAGAAGTTATGTGAAGTTATGTTACTAAAATAACGAAAATGGAAAAGTCACATGTGGAGATCCTGAATGGCTGATTTACACACTGCTACTATGTTTAGCAGTGTTCTAGAACTTTCAGTAAAACTCAAGGACTCTTAAATTACTATAAAATCCCCATATTTTCTGTACATAAATGAACCCTGTAGTAAAGTGCTTCCCTCACACTTTGTGCCTTTTCTCTGGTCTTCAAGTCGGTGTATAGTTCTAGCCTGGGGGCACGCCACTAGCTTAGGGAAGCGAATATAGCGTTCACAATCGGCCAGACGTAACACCTATT] [-] EMBL CD167057 [ TTTAGCAGTGTTTTAGAACTTTCAGTAAAACTCAAGGACTCTTAAATTAATATAAAATCCCCATATTTTGTGTACATAAATGAACCCTGTAGTAAAGTGCTTCCCTCACACTTTGTGCCTTTTCTTTGGTCTTCAAGTCGGTGTATAGTTTTAGCTTGGGGGCCCGCCCCTAGTTTAGGGAAGCGAATATAGCGTTCACAATCGGCCAGACGTAACACCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9759#0 ------------------------------------------------------------ consensus_9759#5 GATTAATTAGAAGTTATGTGAAGTTATGTTACTAAAATAACGAAAATGGAAAAGTCACAT 60 consensus_9759#2 ----------------------------------------------------------TT 2 consensus_9759#3 ------------------------------------------------------------ consensus_9759#1 --------------------GTTGAAGTTGCACTAATTTGTGATAATAGTTAATTAATCA 40 consensus_9759#4 ----------------------------------------------------TGTATCTT 8 consensus_9759#0 -----------------------------------------TTAGTAGTATTCTAGAACT 19 consensus_9759#5 GTGGAGATCCTGAATGGCTGATTTATACACTGCTACTATGTTTAGCAGTGTTCTAGAACT 120 consensus_9759#2 GGACTTGGTCGCATATTGAGAAAATCACCCAACTGCGTCACAAGACAAGCCCTCACATGG 62 consensus_9759#3 ----------------------------------------------AAGTATATATACAG 14 consensus_9759#1 CAGGTTATTTTTTGTGCTGAAATTATTCTCTATGAATACGCACAGAAAATACTTTAGTTG 100 consensus_9759#4 CTGGATAATGGCTTTCGTAGTTCTCCACGTCTCCGCCCCATACAGTAGAACTGTCTTGAC 68 * consensus_9759#0 TTCAGTA--AAAACTCAAGGACTCTTAAATTACTATAAAATCCCTATATTTTCTGTACAT 77 consensus_9759#5 TTCAGTA--AAA-CTCAAGGACTCTTAAATTACTATAAAATCCCCATATTTTCTGTACAT 177 consensus_9759#2 AATCCTG--AAGGCCGAAGGAAAAGAGGAAGACCAAAGAACACCT-TACG-CCGAGAAAT 118 consensus_9759#3 TTCTACT--GTATAGGGCGGATACGTGGAGAACTACGAAAGCCAT-CAT--CCAGAAGAT 69 consensus_9759#1 TTTAATTTCAACGTTTAAACTTGTTTTCATTAGTGATGAACAGTTCTATAGCTTCATTCG 160 consensus_9759#4 ATTTGTATTGAAAATTCTGACTTTGGTGTTGGTTGACAGACAGTT--GTTTTGAGTTCCT 126 * consensus_9759#0 GAATGAACCCTGTAGTAAA-GTGCT-CCCCACACACTTTGTGCCTTTTCTCTGGTCTTCA 135 consensus_9759#5 AAATGAACCCTGTAGTAAA-GTGCT-TCCCTCACACTTTGTGCCTTTTCTCTGGTCTTCA 235 consensus_9759#2 GGAGACAGACATGAGAAGA-ATGAA-CAAAAGTAGGATAGAACTAGAAAGGAAGGCC-CA 175 consensus_9759#3 ACAAGTAATTATTAACAGTTGTCTA-TGCAAGATACTTCGGATCCGTTGGCCAGACA-CT 127 consensus_9759#1 AATAGCATTTTACGATTTGAATGGAGTGCACGTCATTTAACATCTGGAGGAATGCACGGG 220 consensus_9759#4 GATGTTTTTCAGTTGGTAATATGCTGCTCTTGCTTTGCCGATCCTCGCCCTCACATCTGC 186 * consensus_9759#0 AGTCGGTGTATAGTTCCAGCTCGGGGGT--ACGGAACTAGCTTAGGGAAACGAATATAGC 193 consensus_9759#5 AGTCGGTGTATAGTTCTAGCCTGGGGGC--ACGCCACTAGCTTAGGGAAGCGAATATAGC 293 consensus_9759#2 GGACAGAGTG-GGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATTGGAAGTAACAGGC 234 consensus_9759#3 ATCAGCAACA-AGTT--ACTGTGGGAGACAACAAACAAAATTCCAATGGAGGAAGAGATC 184 consensus_9759#1 ATACAGTGGACAGGT--AGGATGCAGCTTGACGATTTAGACTTCG-CGGATGATCTGGCT 277 consensus_9759#4 ATCTGATCCACCGTG--TTCATCAATGTTGCTGCCCAGATATGTAAAAGTCTTTACATAT 244 * * consensus_9759#0 GTCCA--ATCGGCCAGACGTGACACT-TGCTTACCTACGCCTTTTACCCCCAATGGAGCA 250 consensus_9759#5 GTTCACAATCGGCCAGACGTAACACC-TATT----------------------------- 323 consensus_9759#2 GTAATCAAGTAT---GTCTGGATAGT-TCTTCATGGTTGGGATGACCCTGTAATTTTCTC 290 consensus_9759#3 AGGAAGAAACGCTGGAAGTGGATAGGATACACATTGAGGAAGTCACCCAACTGCGTCACA 244 consensus_9759#1 CTTCT--ATCAC--AAACGCAACAACAAATGCAGGAGAAAACGACCAGTGTAGCAGCAGC 333 consensus_9759#4 ATTTCAAAGCTTCTCCGTGAAGTGTGATTTGATTGGTGCATGTTGTATTGTATCGGAGAG 304 * consensus_9759#0 CACGTCACTGGTCGGTATTCTTCAACTCAGTCTGTCCTGGGCCTTCCTTTCTAGTTCTAT 310 consensus_9759#5 ------------------------------------------------------------ consensus_9759#2 G--CAAGCG---ACATGACAAGCTCGTGAGTCATTAAGGAGCATTTCAACCAATCAGCGA 345 consensus_9759#3 AGACAAGCCCTCACATGG-AATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACAC 303 consensus_9759#1 CTCAGCAGCAGTAGGTCTCAATATAAACAAAGGGAAAAGCAAGACTCTCCGATACAATAC 393 consensus_9759#4 TCTTGCTTTTCCGTTTGTTTATATTGATACCTACTGCTGCTACACTGGT----------- 353 consensus_9759#0 CTGTCACAGTTACCTTTCTGACTGCGTTGTTTATAACTAATTGAATACAATAAATGTATA 370 consensus_9759#5 ------------------------------------------------------------ consensus_9759#2 TTTATTAGAAGTTATGTGAAGTTATGTTACTAAAAT-AACGAGGATGAAAAAG------- 397 consensus_9759#3 ATTACGTCGAGAAATGGAGACAGACATGAGAAGAATGAATAAAAATTGGAAAGAACTA-- 361 consensus_9759#1 AATATGCACCAATCCAATTACACTTGACGGAGAAGCTTTGGAGGATGTGAAAACTTCTAC 453 consensus_9759#4 ------------------------------------------------------------ consensus_9759#0 ATATTTTTGACGTAGGAGAAGTTAAGAGCTAATTACTCGTAAAGGCTTTGTAGTTACTGA 430 consensus_9759#5 ------------------------------------------------------------ consensus_9759#2 ------------------------------------------------------------ consensus_9759#3 ------------------------------------------------------------ consensus_9759#1 ATATCTGGGCAGCATCAT------------------------------------------ 471 consensus_9759#4 ------------------------------------------------------------ consensus_9759#0 TCGAAATCTTGTCACAATCCAAATCTTATTTTCAATTAATCAACACAGC 479 consensus_9759#5 ------------------------------------------------- consensus_9759#2 ------------------------------------------------- consensus_9759#3 ------------------------------------------------- consensus_9759#1 ------------------------------------------------- consensus_9759#4 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||