These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 589 fasta sequence [GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCATTATGATCGTCAACTCACAAACTACTGGACCCCTCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCTTCACAAATTACTGGACCCA] [+] EMBL CD092229 [GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCA ] [-] EMBL CD092130 [ TTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTTTCTTTCTCTTCTCCCAACACAAAGATATTCTCACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCAT ] [+] EMBL CD068804 [ tgatgggtGGGTGTTATATAAATTTCATCTGATGGATACATAAATTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACGCGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGGTTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACACATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATCTGAATTTATAGACACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGACTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATATTCAGTTATGTAATCTATTTCATTATGATCGTCAACTCACAAACTACTGGACCCCTCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCTTCACAAATTACTGGACCCA] consensusID : consensus_9764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [CAATAATGCCCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCTCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCCCACACCCATCACAAACTACTGGACCCATCACAAACTCCTGGACCCATCACAAACTACTGGACCCATCACAAACTTCTGGACCCCATCACAAACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAGGCAGTATTGGGTGTGGGGTACC] [-] EMBL CD068803 [CAATAATGCCCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCTCACACCCAATACTGCCCACACCCAATACTGCTCACACCCAATACTGCCCACACCCATCACAAACTACTGGACCCATCACAAACTCCTGGACCCATCACAAACTACTGGACCCATCACAAACTTCTGGACCCCATCACAAACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAGGCAGTATTGGGTGTGGGGTACC] consensusID : consensus_9764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 153 fasta sequence [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCA] [+] EMBL CD168792 [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCA] [+] EMBL CD168788 [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCA] [-] EMBL CD168721 [ACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACA ] [-] EMBL CD168823 [ACAAACTACTGGACCCATCACAAACTACTGGA CCATCACAAACTACTGGACCCAT CAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACA ] [-] EMBL CD168697 [ TCACAAACTACTGGACCCATCACCAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCAC ] [+] EMBL CD168747 [ CACAAACTACTGGACCCATCACAAACTA ACCCATCACAAACTA ACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTACTGGACCCATCAC ] consensusID : consensus_9764#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 115 fasta sequence [TGTGATGGGTCCAGTAGTTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCAGTAGTTTGATGGGTCCAGTACTTTGTGATGGTCCACTTGTTTGTGATGGGTCCATTAGTTTGT] [+] EMBL CD168827 [TGTGATGGGTCCAGTAGTTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCAGTAGTTTGATGGGTCCAGTACTTTGTGATGGTCCACTTGTTTGTGATGGGTCCATTAGTTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9764#0 GTTTATATGGTCAAGCAATAGAAAGGGTGTTATATAAATTTCATCTGATGGATACATAAA 60 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 ------------------------------------------------------------ consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 TTAGGGTCACAGGTTCGAACCACTGTCTGTATACGTAAGAGATGAGACTGAACTCTTACG 120 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 ------------------------------------------------------------ consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 CGAAACGACGAATAAATACAACAGATCACTCGAAATGATATGATTACATGATCTGTATGG 180 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 ------------------------------------------------------------ consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 TTAAATAAACCTAAGTATTGTTTTTCTCAAACTCTTCGACAAACAGAGAGATATTCACAC 240 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 ------------------------------------------------------------ consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 ATTCGTTGGTTAATTCGCTTCGTTGTAAACTCAATATACAACTATCTCTACAGGGGCATC 300 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 ------------------------------------------------------------ consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 TGAATTTATAGATACACACTGAAGAGGCAAATGCAAGTAAATCAGCCTTAGTAAATTAGA 360 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 ---------------------------------CAATAATGCCCACACC--CAATACTGC 25 consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 CTTCACCCTTTAACATTCCTAACTCTAATAGCTCACCTGTCATATCATCATCAATTTATA 420 consensus_9764#2 ------------------------------------------------------------ consensus_9764#1 CCACACCCAATACTGCTCACACCCAATACTGCTCACACCCAATACTGCC-------CACA 78 consensus_9764#3 ------------------------------------------------------------ consensus_9764#0 TTCAGTTATGTAATCTATTTCATTATGATCGT-CAACTCACAAACTACTGGACCCCTCAC 479 consensus_9764#2 -------------------ACAAACTACTGGA-CCCATCACAAACTACTGGACCCATCAC 40 consensus_9764#1 CCCAATACTGCTCAC-ACCCAATACTGCCCACACCCATCACAAACTACTGGACCCATCAC 137 consensus_9764#3 -------------------------------------------TGTGATGGGTCCAGTAG 17 * *** ** * consensus_9764#0 AAACTACTGGACCCATC-ACAAACTACTGGACCCATCACAAACTACTGGACCC-ATCACA 537 consensus_9764#2 AAACTACTGGACCCATC-ACAAACTACTGGACCCATCACAAACTACTGGACCC-ATCACA 98 consensus_9764#1 AAACTCCTGGACCCATC-ACAAACTACTGGACCCATCACAAACTTCTGGACCCCATCACA 196 consensus_9764#3 TTTGTGATGGGTCCAGCTATTTTGTGATGGGTCCA--GTAGTTTGATGGGTCC-AGTACT 74 * *** *** * * * *** *** * * *** ** * ** consensus_9764#0 AACTACTGGACCCATCACAAACTACTGGACCCTTCACAAATTA--CTGGACCCA------ 589 consensus_9764#2 AACTACTGGACCCATCACAAACTACTGGACCCATCACAAACTA--CTGGACCCATCA--- 153 consensus_9764#1 AACTACTGGACCCGTCACAAACTACTGGACCCATCACCAAGTAGGCAGTATTGGGTGTGG 256 consensus_9764#3 TTGTGATGGTCCACTTGTTTG-TGATGGGTCCATTAGTTTGT------------------ 115 * *** ** * * *** ** * * * consensus_9764#0 ------ consensus_9764#2 ------ consensus_9764#1 GGTACC 262 consensus_9764#3 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||