These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1326 fasta sequence [TGGCGGCCGCGAAGAATTCGATTGACAGCATTCACAAGCCATGGTCAGCTGGGTACAGGAGATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCTGTGGTTTGAATTCTGTTGGTCAGCTGGGTCGTTCAAATGACTGCAATCATTTTAAAATCATTCCGTTCTCTTTTGCACCAACTGTTCATAAAGTATCGTGTGGCTGGGATTTTTCTGTTGCAGTACTAAGTGATGGATCTGTTTTCTCGTGGGGATCAAATGAATATGGGCAGTTGGGTAAAGAAAGTATTAATTCAATCATAGTTCCTGTTCGTATTGACATAGAGCCTGTTCGATCTATATCTGCAGGCCTAAGACATGTCGTTTCTGTGACAATCTCCGGAAAACTGTTTGGTTGGGGTTCTAATCGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCGAAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGGGTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG-AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGTGATGAG] [+] EMBL CD165209 [TGGCGGCCGCGAAGAATTCGATTGACAGCATTCACAAGCCATGGTCAGCTGGGTACAGGAGATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCTGTGGTTTGAATTCTGTTGGTCAGCTGGGTCGTTCAAATGACTGCAATCATTTTAAAATCATTCCGTTCTCTTTTGCACCAACTGTTCATA ] [+] EMBL CD081138 [ TTTAAAATCATTCCGTTCTCTTTTGCACCAACTGTTCATAAAGTATCGTGTGGCTGGGATTTTTCTGTTGCAGTACTAAGTGATGGATCTGTTTTCTCGTGGGGATCAAATGAATATGGGCAGTTGGGTAAAGAAAGTATTAATTCAATCATAGTTCCTGTTCGTATTGACATAGAGCCTGTTCGATCTATATCTGCAGGCCTAAGACATGTCGTTTCTGTGACAATCTCCGGAAAACTGTTTGGTTGGGGTTCTAATCGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCGAAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGGGTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGncag ] [-] EMBL CD111476 [ CTGTTTGGTTGGGGTTCTAATCGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCGAAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGGGTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATG ] [-] EMBL CD187571 [ GCTTCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTTGAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAGAAGCA ] [-] EMBL CD074961 [ ATACTCGA TTTTTAAACTCAAATCAGAAGTTCACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGTGATGAG] [+] EMBL CD078709 [ TGAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGT ATAAAGTGTGATG ] [-] EMBL CD073172 [ GAATTATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGATGGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATGGGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTTTTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATGTAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGTGATGAG] [+] EMBL CD070975 [ GGAGTCATGTCCTCGTTAGAACTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTGTTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCATATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTGCTTGTGGTTCAG AGCTCTCATTGGCTATCGA ] consensusID : consensus_9769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 353 fasta sequence [AGAGATTATGGNCGNGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCTTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGCGACAATTTAAGTCTCCTCTTTCTTATGCTTACACCCCGCGCGAACAGCCATGGGCAGNTGGGTACAGGAGATGATAAGGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCT] [+] EMBL CD152917 [AGAGATTATGGNCGNGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCTTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGCGACAATTTAAGTCTCCTCTTTCTTATGCTTACACCCCGCGCGAACAGCCATGGGCAGNTGGGTACAGGAGATGATAAGGATGCTTA ] [+] EMBL CD152956 [ gcCGCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCTTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGCGACAATTTAAGTCTCCTCTTTCTTATGCTTACATGGGGTGCGAACAGCCATGGTCAGCTGGGTACAGGAGATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCT] consensusID : consensus_9769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [TTATGGCCGCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTGTTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCCTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGTGAGCTTTGAGTATCTAAGTATTCGTCACTCCAGTGTTTTTCCAACGGATCTTCATTTGCTTCCTTTTATGTTATGC] [+] EMBL CD200899 [TTATGGCCGCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTGTTCGATGCCATGTACCAGATTTTATGTGCTTCGTTAAATAAAAACCAACTGGATTACGATTAATTTGGTTAATATCCTATAAAAGTCAATAATTTCGTCTTTCGTCTCCATGTAAACAAAGGGTGAGCTTTGAGTATCTAAGTATTCGTCACTCCAGTGTTTTTCCAACGGATCTTCATTTGCTTCCTTTTATGTTATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 TGGCGGCCGCGAAGAATTCGATTGACAGCATTCACAAGCCATGGTCAGCTGGGTACAGGA 60 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 GATGATAAAGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCGCTCTGATC 120 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 TCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCTGTGGTTTG 180 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 AATTCTGTTGGTCAGCTGGGTCGTTCAAATGACTGCAATCATTTTAAAATCATTCCGTTC 240 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 TCTTTTGCACCAACTGTTCATAAAGTATCGTGTGGCTGGGATTTTTCTGTTGCAGTACTA 300 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 AGTGATGGATCTGTTTTCTCGTGGGGATCAAATGAATATGGGCAGTTGGGTAAAGAAAGT 360 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 ATTAATTCAATCATAGTTCCTGTTCGTATTGACATAGAGCCTGTTCGATCTATATCTGCA 420 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 GGCCTAAGACATGTCGTTTCTGTGACAATCTCCGGAAAACTGTTTGGTTGGGGTTCTAAT 480 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 CGCCGAAAACAATTATTCGTTGATAAAGTGTTGAATAAAGCCGAGCATTATGATGAATCG 540 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 AAACAAATATGTTACCGTCCCACTCTATTGAACTCTGTATTAGGTGATACACATGAGTGG 600 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 GTCGATTGTGCTGCTGGTGCATATCATTCAGTTGCAAGAACAAGTATGTTATAAGCTCTT 660 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 GAACAAACAAACTGGCTCTTTTTGGAGATACTCGATTTTTTAAACTCAAATCAGAAGTTC 720 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 ACGATCTTTCTTTAAATACCGAAAGTAGACTTTCATCTCCTATTTGGTATGATGCTGAAT 780 consensus_9769#1 -------------------------------------------------AGAGATTATGG 11 consensus_9769#2 ------------------------------------------------------TTATGG 6 consensus_9769#0 TATTCGGTAACAATAAAGTAGAACAAGTGGTATGTGGATGGAGTCATGTCCTCGTTAGAA 840 *** consensus_9769#1 NC-GNGTGATCTAAAGTGGTACGTTACTCTAGTTTGTATTCG-ATGCCATGTACCAGATT 69 consensus_9769#2 CC-GCGTGATCTAAAGTGGTACGTTACTCTAGTTTGTGTTCG-ATGCCATGTACCAGATT 64 consensus_9769#0 CTAGTGTTGGAGAAGTTTATTCGTGGGGTCGATCAGACTTTGGACAGCTTGGACGAACTG 900 * ** ** * * *** * * ** * * * ** ** * * consensus_9769#1 TTA------TGTGCTTCGTTAAATAAAAACCAACTG-GATTACGATTAATTTGGTTA-AT 121 consensus_9769#2 TTA------TGTGCTTCGTTAAATAAAAACCAACTG-GATTACGATTAATTTGGTTA-AT 116 consensus_9769#0 TTAACATATTGAGCAAGTTTATAGGGAAGTCTAATGAGATTTTCCCGAATTTCGATGCAT 960 *** ** ** *** * ** * * ** **** ***** * * ** consensus_9769#1 ATCTTATAAAAGTCAATA---ATTTCGTCTTTCGTCTCCATGTAAACA-AAGGGCGACAA 177 consensus_9769#2 ATCCTATAAAAGTCAATA---ATTTCGTCTTTCGTCTCCATGTAAACA-AAGGGTGA-GC 171 consensus_9769#0 ATCCTGGGAAAGTACATTTTCATTTAAATGATGGTCATGAAGTGACCGTAAAAACTATTG 1020 *** * ***** ** **** * *** * ** * * ** * consensus_9769#1 TTTAAGTCTCCTCTTTCTTAT--GCTTACACCCCGCGCGAACAGCCATGGGCAGNTGGGT 235 consensus_9769#2 TTTGAGTATCTAAGTATTCGTC-ACTCCAGTGTTTTTCCAACGGATCT---TCATTTGCT 227 consensus_9769#0 CTTGTGGTTCAGAGCACTCATTGGCTATCGATTCAAATGGACAGTTATGGGTTTGGGGAT 1080 ** * ** * * ** ** * * * * consensus_9769#1 ACAGGA--GATGATAAGGATGCTTATGAGCCTAAAATTATTAATTTTACTGATCCAGTCG 293 consensus_9769#2 TCCTTT--TATGTTATGC------------------------------------------ 243 consensus_9769#0 GGAATGAGCATGGTATGTGCGGTGTTATAACGAAAACTGCAAGTCAGATAGAACAACATG 1140 *** ** * consensus_9769#1 CTCTGATCTCCGGAGGTGGTGGTCACTCTCTGATTTCTAACGAAAACAATATATTCAGCT 353 consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 GGACTCAAGAAGAAGTTATTCCATATATTACACAACCATATCGAATAAGTTTCCGCTGTT 1200 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 TTAATCAAAATTACAAAGTGAAATATATCGGTTGTGGATACGGTCATTCAATGGCATATG 1260 consensus_9769#1 ------------------------------------------------------------ consensus_9769#2 ------------------------------------------------------------ consensus_9769#0 TAGAATTTGGTTCGTAAACATTGTAAAAATCATATTAGATTTTTGTTTGTAATAAAGTGT 1320 consensus_9769#1 ------ consensus_9769#2 ------ consensus_9769#0 GATGAG 1326 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||