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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1026 fasta sequence
[GTGTTGATGCCCGTCGGTTTGTTATGGCTGAGTGTGCCGTGGCCACAGCAAAAGCAAATGTTATGCTGTATGATTCGAAGGCTAGTACTTGGATCCTCAGTGGTCCAGGACATGGCATTTCCAAAGTTCAACTATATCACAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGAGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTTCATCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAATTTCACATCAGTTGAAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTATTTATCAAGATACACAACTAAACCAATATCAACAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCAACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACTGAAGGTTACGGCGATCAGAACAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAATGTCTACCCGGGTTATACAACAACAACAACATGTAAAACTAATACCTCTAGTCATCAGAATACTGAAATTTCGCATCTTAAATCATCAATGGAACAAAATGTATCCACGATAAATGGTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCGTAAGTGTTTTTTTTTCAAAAAATTATTGTTTTTAAGATGATGAATAATAATGCGAAAATGTTGA]
[-] EMBL CD188969 [GTGTTGATGCCCGTCGGTTTGTTATGGCTGAGTGTGCCGTGGCCACAGCAAAAGCAAATGTTATGCTGTATGATTCGAAGGCTAGTACTTGGATCCTCAGTGGTCCAGGACATGGCATTTCCAAAGTTCAACTATATCACAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGAGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTTCATCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAATTTCACATCAGTTGAAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGT ]
[+] EMBL CD067283 [ TCCAAAGTTCAACTATATCACAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGAGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTCCATCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAATTTCACATCAGTTGAAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGCAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTATTTATCAAGATACACAACTAAACCAATATCAACAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCAACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACT ]
[-] EMBL CD198146 [ TAATTAATGCTTATCGAGTTGTCGGTTGANGGTTACCAGACCGTGAGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTTCATCAATGGCGTGATAGTAGACAACAAGCTTACGGTTTGAATTTCACATCAGTTGAAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCCGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTATTTATCAAGATACACAACTAAACCAATATCAACAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCAACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAA ]
[-] EMBL CD179510 [ AGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTTCATCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAATTTCACATCAGTTGGAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTATTTATCAAGATACACAACTAAACCAATATCAACAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCAACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACTGAAGGTTACGG ]
[+] EMBL CD153284 [ TAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTATTTATCAAGATACACAACTAAACCAATATCAAAAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCAACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACTGAAGGTTACGGCGATCAGAACAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAATGTCTACCCGGGT ]
[+] EMBL CD153196 [ TAGAAAGTCTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTATTTATCAAGATACACAACTAAACCAATATCAAAAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCAACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACTGAAGGTTACGGCGATCAGAACAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAATGTCTACCCGGGTTAT ]
[+] EMBL AI976747 [ ACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAATATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACTGAAGGTTACGGCGATCAGAACAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAATGTCTACCCGGGTTATACAACAACAACAACATGTAAAACTAATACCTCTAGTCATCAGAATACTGAAATTTCGCATCTTAAATCATCAATGGAACAAAATGTATCCACGATAAATGGTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCGTAAGTGTTTTTTTTTCAAAAAATTATTGTTTTTAAGATGATGAATAATAATGCGAAAATGTTGA]
consensusID : consensus_9788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 529 fasta sequence
[CAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAATGTCTACCCGGGTTATACAACAACAACAACATGTAAAACTAATACCTCTAGTCATCAGAATACTGAAATTTCGCATCTTAAATCATCAATGGAACAAAATGTATCCACGATAAATGGTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCGTATTATTCATCTTCAGACGATAGTGTACGTAATCTTCGTGGTCTGCCTAATGGATCCAATGAACCTCATGTGAATCCAACTTCATTCGTGACGTTGAATGCTTCCAATTTTCCTAATAGCAATGTTAAACCATTAGGTGGAAATTCAGATGAATCTTCTGTTACTACCAGGTCTCTTTCACCAAATCAATGCACTTCAATTAATATTACCAAATCCCAACAATCGATTCCTGCTCCACCACCA]
[+] EMBL CD169658 [CAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAATGTCTACCCGGGTTATACAACAACAACAACATGTAAAACTAATACCTCTAGTCATCAGAATACTGAAATTTCGCATCTTAAATCATCAATGGAACAAAATGTATCCACGATAAATGGTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCGTATTATTCATCTTCAGACGATAGTGTACGTAATCTTCGTGGTCTGCCTAATGGATCCAATGAACCTCATGTGAATCCAACTTCATTCGTGACGTTGAATGCTTCCAATTTTCCTAATAGCAATGTTAAACCATTAGGTGGAAATTCAGATGAATCTTCTGTTACTACCAGGTCTCTTTCACCAAATCAATGCACTTCAATTAATATTACCAAATCCCAACAATCGATTCCTGCTCCACCACCA]
[-] EMBL CD067152 [ TCAATGGAACATAATGTATCCACGATAAATGGTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCGTATTATTCATCTTCAGACGATAGTGTACGTAATCTTCGTGGTATGCGTAATGGATCCAATGAACCTCATGTGAATCCAACTTCATTCGTGACGTTGAATGCTTCCAATTTTCCCAATAGCAATGTTAAACCATTAGGTGGAAATTCAGATGAATCTTCTGTTACTACCAGGTCTCTTTCACCAAATCAATGCAATTCAATTAATATTACCCAATCCCAACA ]
consensusID : consensus_9788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[TTGATTGCCGTCGGTTTGTTATGGCTGAGTGTGCCGTGGCCACAGCAAAAGCAAATGTTATGCTGTATGGTTCGAAGGCTAGTACTTGGATCCCCAGTGGTCCAGGCCATGGCATTTCCAAAGTTCAACTATATCACAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGAGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTTCATCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAATTTCACATCAGTTGAAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTTTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTACTACTACTACTAC]
[-] EMBL CD200828 [TTGATTGCCGTCGGTTTGTTATGGCTGAGTGTGCCGTGGCCACAGCAAAAGCAAATGTTATGCTGTATGGTTCGAAGGCTAGTACTTGGATCCCCAGTGGTCCAGGCCATGGCATTTCCAAAGTTCAACTATATCACAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGAGGTTGTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCCAACGTTTCATCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAATTTCACATCAGTTGAAGAAGCAGATGCATTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTTTAGCCGCACTGCATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATGACCAGGTGGTGTCTAACGAAACAACAACAACTACTACTACTACTACTACTACTAC]
consensusID : consensus_9788#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[TCAGTCACCTGATGTTGAGTGTTCGTACCCCTCTCCATCTACGTTGATTTGGTCAACAGGATAGTATCACTAGCCTTCATAATTAGAATGACTCAAATCCAAGTGGTAACTTAATTAATAAATACCAGCTAAATAGTATCACATTCTCTGTGTTTCTTAACTCTATTTGGCTTAGCATTTGACTATTTATAGATTAGACTATGAAACTTTAACTGATCATTTGAATTGTGCTATTTCTTAGGATGAATTTAGATTTCTTAGTTTTTTTCTTAAAAAATAGGTATTATTCATCTTCAGACGATAGTGTACGTAATCTTCGTGGTCTGCCTTAATGGATCCAAATGAACCTCATGTGAATCCAACTTCATTCGTGACGTT]
[+] EMBL CD069467 [TCAGTCACCTGATGTTGAGTGTTCGTACCCCTCTCCATCTACGTTGATTTGGTCAACAGGATAGTATCACTAGCCTTCATAATTAGAATGACTCAAATCCAAGTGGTAACTTAATTAATAAATACCAGCTAAATAGTATCACATTCTCTGTGTTTCTTAACTCTATTTGGCTTAGCATTTGACTATTTATAGATTAGACTATGAAACTTTAACTGATCATTTGAATTGTGCTATTTCTTAGGATGAATTTAGATTTCTTAGTTTTTTTCTTAAAAAATAGGTATTATTCATCTTCAGACGATAGTGTACGTAATCTTCGTGGTCTGCCTTAATGGATCCAAATGAACCTCATGTGAATCCAACTTCATTCGTGACGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9788#1 CAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGCTTTGTGCAA 60
consensus_9788#0 ---------------------------------------GTGTTGATGCCCGTCGGTTTG 21
consensus_9788#2 ------------------------------------------TTGATTGCCGTCGGTTTG 18
consensus_9788#3 ----TCAGTCACCTGATGTTGAGTGTTCGTACCCCTCTCCATCTACGTTGATTTGGTCAA 56
* *
consensus_9788#1 TGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGATAATCAGAA 120
consensus_9788#0 TTATGGC--TGAGTGTGCCGTGGCCACAGCAAAAGCAAATGTTATGCTGTATGATTCGAA 79
consensus_9788#2 TTATGGC--TGAGTGTGCCGTGGCCACAGCAAAAGCAAATGTTATGCTGTATGGTTCGAA 76
consensus_9788#3 C-AGGATAGTATCACTAGCCTTCATAATTAGAATGACTCAAATCCAAGTGGTAACTTAAT 115
* * * * ** * * *
consensus_9788#1 TGTC--TACCCGGGTTATACAACAACAACAACATGTAAAACTAATACCTCTAGT-CATCA 177
consensus_9788#0 GGCTAGTACTTGGATCCTCAGTGGTCCAGGACATGGCATTTCCAAAGTTCAACTATATCA 139
consensus_9788#2 GGCTAGTACTTGGATCCCCAGTGGTCCAGGCCATGGCATTTCCAAAGTTCAACTATATCA 136
consensus_9788#3 TAATA-AATACCAGCTAAATAGTATC-ACATTCTCTGTGTTTCTTAACTCTATT-TGGCT 172
* * * * * ** * * *
consensus_9788#1 GAATAC-TGAAATTTCGCATCTTAAATCATCAATGGAACAAAATGTATCCACGATAAATG 236
consensus_9788#0 CAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGA--GGTT 197
consensus_9788#2 CAACACGTTAACTAATGCTTATCGAGTTGTCGGTTGGAGGTTACCAGACCGTGA--GGTT 194
consensus_9788#3 TAGCATTTGACTATTTATAGATTAGACTATGAA--ACTTTAACTGATCATTTGAATTGTG 230
* * * * * * ** *
consensus_9788#1 GTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCG-TATTATTCA 295
consensus_9788#0 GTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCC-AACGTTTCA 256
consensus_9788#2 GTTATTAATTGTGCCATTGCACGGGGGTTAAAATATCACCAAGCACGTCC-AACGTTTCA 253
consensus_9788#3 CTATTTCTTAGGATGAATTTAGATTTCTTAGTTTTTTTCTTAAAAAATAGGTATTATTCA 290
* ** * * * * * ****
consensus_9788#1 TCTTCAG-ACGATAGTGTACGTAATCTTCGTGGTCTGCCT-AATGGATCCAA-TGAACCT 352
consensus_9788#0 TCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAAT-TTCACATCAGT-TGAAG-- 312
consensus_9788#2 TCAATGGCGTGATAGTAGACAACAAGTTTACGGTTTGAAT-TTCACATCAGT-TGAAG-- 309
consensus_9788#3 TCTTCAG-ACGATAGTGTACGTAATCTTCGTGGTCTGCCTTAATGGATCCAAATGAACCT 349
** * ****** ** * ** *** ** * *** ****
consensus_9788#1 CATGTGAATCCAACTTCATTCGTGACGTTGAAT-GCTTCCAATTTTCCTAATAGCAATGT 411
consensus_9788#0 -AAGCAGATGCA--TTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTCTAGCCGCACTGC 369
consensus_9788#2 -AAGCAGATGCA--TTTGCTGCCGCTGTTAAATCAGCCTTAGAAAGTTTAGCCGCACTGC 366
consensus_9788#3 CATGTGAATCCAACTTCATTCGTGACGTT------------------------------- 378
* * ** ** ** * * ***
consensus_9788#1 TAAACCATTAGG---TGGAAATTCA--GATGAATCTTCTGTTACTACCAGGTCTCTTTCA 466
consensus_9788#0 ATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATG 429
consensus_9788#2 ATTGTCAACAGGCTTTACAAGCTCAACAACAACAACAATGTAAGCCTCCTGTTACTTATG 426
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 CCAAATCAATGCACTTCAATTAATATTACCAAATCCCAACAAT-CGATTCCTGCTCCACC 525
consensus_9788#0 ACCAGGTGGTGTCTAACGA--AACAACAACAACTACTACTACTATTTATCAAGATACACA 487
consensus_9788#2 ACCAGGTGGTGTCTAACGA--AACAACAACAACTACTACTACTACTACTACTACTAC--- 481
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ACCA-------------------------------------------------------- 529
consensus_9788#0 ACTAAACCAATATCAACAATCAAAATACCAAATACCAAATCAACAGCCATCATCAAATCA 547
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 ACAAATAACTAAATATACTAATGATAACGACCAGGCACATTCTGTACAACCTACGGGAAT 607
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 ATTAGTCCAAAATCTTCAGATTTCATCCTCTGGCATAACTGAACCAACTGAAGGTTACGG 667
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 CGATCAGAACAAGCCATTATCATCATCGGCGTTATCGAATCAGCAGTCTGATCGAGACGC 727
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TTTGTGCAATGATTACAATGAGGCAATTGTGAACAGTGTAAATAGCATTATTTTAAGTGA 787
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TAATCAGAATGTCTACCCGGGTTATACAACAACAACAACATGTAAAACTAATACCTCTAG 847
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TCATCAGAATACTGAAATTTCGCATCTTAAATCATCAATGGAACAAAATGTATCCACGAT 907
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 AAATGGTTGTTCAATGAATGGTAATACAGAACATGGTGTAAATTGTGATTCACCGTAAGT 967
consensus_9788#2 ------------------------------------------------------------
consensus_9788#3 ------------------------------------------------------------
consensus_9788#1 -----------------------------------------------------------
consensus_9788#0 GTTTTTTTTTCAAAAAATTATTGTTTTTAAGATGATGAATAATAATGCGAAAATGTTGA 1026
consensus_9788#2 -----------------------------------------------------------
consensus_9788#3 -----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||