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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1284 fasta sequence
[AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGATAGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATACAGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGATTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGATACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAGTGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCACTGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTCTCTAGCTAATTTACCTGCTGGCAAAACTTGGTTGATATCGTTGTCAATATCCATATATAACAGGATGAAGTCACTTCAGTTGGACGTCCATTATTTATAATCCAAGAGTCCGTAAGCCAAGGTGTATATATGGCAGAGCGACGTCAACATATCAATACTTTGGACTATCAACAGTATGAACGCCAATCGTTGTATGGGTCTTGACAACACAAATTTATGTTACAAGCGAAACCCCGTCCACAAACGCCAAAACCGAAAGCATCTTTGACCTAC]
[+] EMBL CD096368 [AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGATAGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATACAGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGATTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGATACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAGTGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCACTGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGA ]
[+] EMBL CD096662 [AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGATAGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATACAGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGATTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGATACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAGTGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCACTGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGA ]
[+] EMBL BG930202 [ GTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGCAAGTGTTGGTTGTATGTGGTTTGGA ]
[+] EMBL CD184746 [ CAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAATACA ]
[+] EMBL CD184732 [ CAACAGAAGCTACTGACGGCGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAAT ]
[-] EMBL CD183974 [ GCTGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGT ]
[+] EMBL CD148726 [ TGTCGTAACACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGCAGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGAGCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTT ]
[-] EMBL CD184050 [ CTTGATGTTGACGGAGGCAATGTAGATGCGGCAGCCAATATCCAAAGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGT ]
[-] EMBL CD128021 [ TAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGACGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTCTCTAGCTAATTTACCTGCTGGCAAAACTTGGTTGATATCGTTGTCAATATCCATATATAACAGGATGAAGTCACTTCAGTTGGACGTCCATTATTTATAATCCAAGAGTCCGTAAGCCAAGGTGTATATATGGCAGAGCGACGTCAACATATCAATACTTTGGACTATCAACAGTATGAACGCCAATCGTTGTATGGGTCTTGACAACACAAATTTATGTTACAAGCGAAACCCCGTCCACAAACGCCAAAACCGAAAGCATCTTTGACCTAC]
consensusID : consensus_9792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence
[GATAATGCAAACTATTATTATCAGAGGGTTTTTTTGTGGAGATTTCAGTATTTTCATAGTTGAAAGCATGGTAAGTCCTGGGTTCGAATCTCGTGAGGCGGTATCATGGATGCGCATTGCTGAAGAGTTCCACAATATAGAACGAAACGACCGTCTAGTACTTCCAGTTTTTTCTTGGTGGTCTAGCTTAGTCTACGCGACATTGAATACACCGTGTGACCGTTCAACGCTTTCAATTAAGTCCCAATCCGTTTAGTAATGGACGTTCCGTCAAAAATATTGCTCTCTACTCCATTAGTTGCTTCATTAATCAATAAAAACTGCTCCACATCCCCGTCAGCAGCTTCTGTTGTCATAT]
[+] EMBL CD148334 [GATAATGCAAACTATTATTATCAGAGGGTTTTTTTGTGGAGATTTCAGTATTTTCATAGTTGAAAGCATGGTAAGTCCTGGGTTCGAATCTCGTGAGGCGGTATCATGGATGCGCATTGCTGAAGAGTTCCACAATATAGAACGAAACGACCGTCTAGTACTTCCAGTTTTTTCTTGGTGGTCTAGCTTAGTCTACGCGACATTGAATACACCGTGTGACCGTTCAACGCTTTCAATTAAGTCCCAATCCGTTTAGTAATGGACGTTCCGTCAAAAATATTGCTCTCTACTCCATTAGTTGCTTCATTAATCAATAAAAACTGCTCCACATCCCCGTCAGCAGCTTCTGTTGTCATAT]
consensusID : consensus_9792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[TGTAATGGTGTCGGTGCACTTGATGTAGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGTCGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTAGGACTGAGAAAA]
[-] EMBL CD143134 [TGTAATGGTGTCGGTGCACTTGATGTAGACGGAGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTAGAATTAATGGGAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGGCCACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGATTTATCAGACTAGACAAAGGTTGCTGGTCGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAATTGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTAGGACTGAGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9792#0 AACCAATTTCGTTTTTGATGTTTGTGGAGACTGTGTATTTATTTGATCATGGAAAATGAT 60
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 AGCGGGATTCGATAAATTGGTGGAACTGGAATCAGATGTACTCATCTTACTGGGAGATAC 120
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 AGTAGTAGTTGAAGTTGTTGGAGTCTCTATCAAAGATGGTGGGTTTGAAAGGTTTTGAGA 180
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 TTTATGAATAAGTACACGTGGAGTTGAGCAGAGAGTAGAACTCATGAGCAAACTGCCAGA 240
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 TACAGAAGTCGGTGCAGGAAAATTTATAGCAGTCACACAATGTGATCTTTGAGACTGGAG 300
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 TGGCAACGTAACATTTGTTGTAGGAGTTTCAAACACTAGAGGGCAGGCACTTGAATTCAC 360
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 TGTTGCAGTCGTAACCATAGAGCTACATTGCGTTGACGTATGGGTTGCGAATCTTAAAGC 420
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 AAGTGTTGGTTGTATGTGGTTTGGAGCCTGTGGAGATATGACAACAGAAGCTACTGACGG 480
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 CGATGTGGAACAGTTTTTATTGATTAATGAAGCAACTAATGGAGTAGAAGCTGTCGTAAC 540
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 ACCAGATGTACTTAGCCGCGATGGACTGTTTAGAACATTCGGTACTGACAAACAGGATGC 600
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 AGTAGTTGTGACACTTGGATGCAAAAAGATACTCTGACTTGATGCTGGCGCAACACTAGA 660
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------GATAAT 6
consensus_9792#0 GCTTCCTGAATAGTTCCCTAAGTGAAGTTGTAGTGGTGTCGGTGCACTTGATGTTGACGG 720
consensus_9792#2 ----------------------------TGTAATGGTGTCGGTGCACTTGATGTAGACGG 32
consensus_9792#1 GCAAACTATTATTATCAGAGGGTTTTTTTGTGGAGATTTCAGTA---TTTTCATAGTTGA 63
*** * * ** ** ** * * *
consensus_9792#0 AGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTA-GAATTAATGG 779
consensus_9792#2 AGGCAATGTAGATGCGGCAGCCAATATCAAAGGGAAGAACTGATTGGTA-GAATTAATGG 91
consensus_9792#1 AAGCATGGTAAGTCCTGGGTTCGAATCTCGTGAGGCGGTATCATGGATGCGCATTGCTGA 123
* *** *** * * * * * * * * * ** * * * *** **
consensus_9792#0 GAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGG 839
consensus_9792#2 GAGATGAAACTGATGTAGCCGACATATGTAAACTTGAAACATGTGGTAAAGGCGTATTGG 151
consensus_9792#1 AGAGTTCCAC-AATATAGA-ACGAAACGACCGTCTAGTACTTCCAGTTTTTTCTTGGTGG 181
* ** ** *** * * * * ** * ** * * ***
consensus_9792#0 CC--ACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGAT-TTATCAGACTAG 896
consensus_9792#2 CC--ACAGATGCAGTGGTAAGAGCAGTAGGTTGTATTATTGTTTGAT-TTATCAGACTAG 208
consensus_9792#1 TCTAGCTTAGTCTACGCGACATTGAATACACCGTGTGACCGTTCAACGCTTTCAATTAAG 241
* * * * * * * ** ** * * *** * * *** **
consensus_9792#0 ACAAAGGTTGCTGGACGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAAT 956
consensus_9792#2 ACAAAGGTTGCTGGTCGCTAAGCAATACACGTGGGAAAAATGGTACTGTTTTTGATGAAT 268
consensus_9792#1 TCCCAATCCGTTTAGTAATGGACGTTCC--GTCAAAAATATTGCTCTCTACTCCATTAGT 299
* * * * * * * * ** *** ** * ** * * ** * *
consensus_9792#0 TGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTCTCTAG 1016
consensus_9792#2 TGGAAGAAGGGTTTTGCAAAATGGAAGTACATATATGAGTTGGACGATCTGGTTA--GGA 326
consensus_9792#1 TGCTTCATTAATCAATAAAAACTGC--TCCACATCCCCGTCAGCAGCTTCTGTTGTCATA 357
** * * **** * * ** ** ** * * * ***
consensus_9792#0 CTAATTTACCTGCTGGCAAAACTTGGTTGATATCGTTGTCAATATCCATATATAACAGGA 1076
consensus_9792#2 CTGAGAAAA--------------------------------------------------- 335
consensus_9792#1 T----------------------------------------------------------- 358
consensus_9792#0 TGAAGTCACTTCAGTTGGACGTCCATTATTTATAATCCAAGAGTCCGTAAGCCAAGGTGT 1136
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 ATATATGGCAGAGCGACGTCAACATATCAATACTTTGGACTATCAACAGTATGAACGCCA 1196
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 ATCGTTGTATGGGTCTTGACAACACAAATTTATGTTACAAGCGAAACCCCGTCCACAAAC 1256
consensus_9792#2 ------------------------------------------------------------
consensus_9792#1 ------------------------------------------------------------
consensus_9792#0 GCCAAAACCGAAAGCATCTTTGACCTAC 1284
consensus_9792#2 ----------------------------
consensus_9792#1 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||