These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1644 fasta sequence [CGAAAGTTTCAATTTACTTGTATGAAGAATTAATGAAACTGGGAATGAATGAACTTTTACCGAAAAAAAGCCCGTTACCAACAGACCTTTATATGATTTCCTACACTAGTGGAAGTACTGGTTTGCCTAAAGGAGTTCTGATTAGTCACAAGGAAGTTACACATACCGCAATTTCGCTTCATGAATCTATTGAATTCAAGTTTGTCAATTCTAATTCAGTTACATCTCTCATATCTCCCACTGTCCACATATTATGGAACAAATAGCATTGTTGTCTCATATTCTAATGGGAGCTTCTTCCGGATTTCTAACAGAATCTATTGATCGTCTACTGGATGATATTGAAATTTTGAGACCAACTTCACTGGTTGTAGTTCCACGTGTGCTTTCTCGTTTGTACACAAAATATCAAGATGCATTGGGTGATTCCGCAATGAGAAAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGAACAAAAACGTGGAAAATTTCATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACTTAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAACGGAAACAATGGGAAGCATCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTCGGATTCTGAACTTTGCCGAAACGAAACTGTCAATAAATTTGTTTTGGAAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCCAGGCAATTTACTTGACAGACGAGGCGTTTACGGTAGACAATGGCTTATTGACTCCAACAATGAAACTATCACGTAATAAAGCTCGAAATTATTTTTCAAAAACAATAGCTAGTTTATACACACAGCATGAGCTTAATTCTTCTTCAACTTAACATTTGTGATCATTCTCAACTTACAATGTGTACGTGTGAAATGGGTTCGTTTGAACTTAATATTCTTCGTAGATGGTATTCTGTGAACTATTCTGATTTCTCCATGTATTCCACANAAATCGCTTTCTTTATTTAATAAGAAACATTNNAGTATTGTTTAAATACATGGNAAGCGTCTTTACAATGGTATATTATGATATCTACTCATCTTAGCATGCGCATTAAAAATAAATATT] [+] EMBL CD163724 [CGAAAGTTTCAATTTACTTGTATGAAGAATTAATGAAACTGGGAATGAATGAACTTTTACCGAAAAAAAGCCCGTTACCAACAGACCTTTATATGATTTCCTACACTAGTGGAAGTACTGGTTTGCCTAAAGGAGTTCTGATTAGTCACAAGGAAGTTACACATACCGCAATTTCGCTTCATGAATCTATTGAATTCAAGTTTGTCAATTCTAATTCAGTTACATCTCTCATATCTCCCACTGTCCACATATTATGGAACAAATAGCATTGTTGTCTCATATTCTAATGGGAGCTTCTTCCGGATTTCTAACAGAATCTATTGATCGTCTACTGGATGATATTGAAATTTTGAGACCAACTTCACTGGTTGTAGTTCCACGTGTGCTTTCTC ] [-] EMBL CD112752 [ TGGGAGCTTCTTCTGGATTTCTAACAGAATCTATTGATCGCCTACTGGATGATATTGAAATTTTGAGACCAACTTCACTGGTTGTAGTTCCACGTGTGCTTTCTCGTTTGTACACAAAATATCAAGATGCATTGGGTGATTCCGCAATGAGAAAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGAACAAAAACGTGGAAAATTTCATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACTTAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAGGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAACGGAAACAATGGGAAGCATCACTTTGACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGT ] [-] EMBL CD140980 [ aanAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGAACAAAAACGTGGAAAATTTTATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACTTAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAGCAACGGAAGCAATCGGATGCATCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTA ] [-] EMBL CD097489 [ AGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCCAGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAGCAACGGAAGCAATCGGATGCACCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGGTGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATT ] [-] EMBL CD097909 [ TCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAACGGAAACAATGGGAAGCATCACTTTAACATCGGTCGGAGAGTACCGTTGAGGTACTGTCGGTGGTGTCCTATATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATAGTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAA ] [-] EMBL CD141665 [ cnCAGATTT GATTTGGTTGTATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTTTAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACcg ] [+] EMBL CD160673 [ AGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGATATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTC ] [+] EMBL CD080606 [ gaggGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTCGGATTCTGAACTTTGCCGAAACGAAACTGTCAATAAATTTGTTTTGGAAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCCAGGCAATTTACTTGACAGACGAGGCGTTTACGGTAGACAATGGCTTATTGACTCCAACAATGAAACTATCACGTAATAAAGCTCGAAATTATTTTTCAAAAACAATAGCTAGTTTATACACACAGCATGAGCTTAATTCTTCTTCAACTTAACATTTGTGATCATTCTCAACTTACAATGTGTACGTGTGAAATGGGTTCGTTTGAACTTAATATTCTTCGTAGATGGTATTCTGTGAACTATTCTGATTTCTCCATGTATTCCACANAAATCGCTTTCTTTATTTAATAAGAAACATTNNAGTATTGTTTAAATACATGGNAAGCGTCTTTACAATGGTATATTATGATATCTACTCATCTTAGCATGCGCATTAAAAATAAATATT] [+] EMBL CD145488 [ AGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATTCAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAG ] [+] EMBL CD059302 [ nTTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTGCAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGTAGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAATCATAAAAAACTTTCGGATTCTGAACTNTGCCGAAACGAAACTGTCAATAAATNTGTTTTGGCAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCC ] consensusID : consensus_9793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence [TGCTAAGATGAGTAGATATCATAAATAATACATTGTAAAAGACGCTTCCAATGTTATTTAAACAAATACTTAATGTTTCTTATTAAATAAAGAAAGCGATTTTTGTGGAATAC] [+] EMBL AI067085 [TGCTAAGATGAGTAGATATCATAAATAATACATTGTAAAAGACGCTTCCAATGTTATTTAAACAAATACTTAATGTTTCTTATTAAATAAAGAAAGCGATTTTTGTGGAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9793#0 CGAAAGTTTCAATTTACTTGTATGAAGAATTAATGAAACTGGGAATGAATGAACTTTTAC 60 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 CGAAAAAAAGCCCGTTACCAACAGACCTTTATATGATTTCCTACACTAGTGGAAGTACTG 120 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 GTTTGCCTAAAGGAGTTCTGATTAGTCACAAGGAAGTTACACATACCGCAATTTCGCTTC 180 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 ATGAATCTATTGAATTCAAGTTTGTCAATTCTAATTCAGTTACATCTCTCATATCTCCCA 240 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 CTGTCCACATATTATGGAACAAATAGCATTGTTGTCTCATATTCTAATGGGAGCTTCTTC 300 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 CGGATTTCTAACAGAATCTATTGATCGTCTACTGGATGATATTGAAATTTTGAGACCAAC 360 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 TTCACTGGTTGTAGTTCCACGTGTGCTTTCTCGTTTGTACACAAAATATCAAGATGCATT 420 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 GGGTGATTCCGCAATGAGAAAGCGTCTTTATAATTATATTGTAAAGAAGAAATTAGCTGA 480 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 ACAAAAACGTGGAAAATTTCATCATCGAAGCGTTTTGGACACAATGTTGTTTGGTAAACT 540 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 TAGAAAGAAATTTGGCGGACGTGTATGTTGCTTGGTTACCGGGAGCGCCCCACTGTCTCC 600 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 AGAACTCTCAAAGTTCGCACATGCTGCATTCGGCCCGATTTTTGAAGGGTATGGAACAAC 660 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 GGAAACAATGGGAAGCATCACTTTAACATCGGTCGGAGAGTACCGTTTAGGTACTGTCGG 720 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 TGGTGTCGTTTATGGTGTGGAACTGAAACTTGTTGATGTCCCAGATTTGGATTTGGTTGT 780 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 ATCACGTGATGGAAGGGGCGAGATATGTGCCAGAGGCGACCAGTGCAGCAAAGGTTATTT 840 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 TAAGGATCCGGTAAAAACTGCCGAACTTATTGATAGTGATGGTTGGATTCATACTGGGGA 900 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 TATTGGTGAATGGACTGAAGAAGGTTCACTCAAAATCGTGGACCGTGTAAAGAGTATATT 960 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 CAAATTAGCTCAAGGTGAATATATTGCACCTGAAAAAATAGAAATGGTTTATCAGTACTG 1020 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 CAGATTAATAAGTCAAATATTTATAGATGGTAACAGTCAAAAGAATTATCCAGTTGCAGT 1080 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 AGTAGTTCCAGATTTTACTGAATTGCGTTCCTCTCTAAGCAATGGTAAGATACTGCAAAA 1140 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 TCATAAAAAACTTTCGGATTCTGAACTTTGCCGAAACGAAACTGTCAATAAATTTGTTTT 1200 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 GGAAAAAATGAATGCTGTAGCAACACAAAAACTTTTGAAGGGTTTCGAAAAGGTCCAGGC 1260 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 AATTTACTTGACAGACGAGGCGTTTACGGTAGACAATGGCTTATTGACTCCAACAATGAA 1320 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 ACTATCACGTAATAAAGCTCGAAATTATTTTTCAAAAACAATAGCTAGTTTATACACACA 1380 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 GCATGAGCTTAATTCTTCTTCAACTTAACATTTGTGATCATTCTCAACTTACAATGTGTA 1440 consensus_9793#1 ------------------------------------------------------------ consensus_9793#0 CGTGTGAAATGGGTTCGTTTGAACTTAATATTCTTCGTAGATGGTATTCTGTGAACTATT 1500 consensus_9793#1 ----------------TGCTAAGATGAGTAGATATCATAAATAATACATTGTAAAAGACG 44 * * * * ** ** ** ** ** *** ** * consensus_9793#0 CTGATTTCTCCATGTATTCCACANAAATCGCTTTCTTTATTTAATAAG-AAACATTNNAG 1559 consensus_9793#1 CT-----TCCAATGTTATTTAAACAAATACTTAATGTTTCTTATTAAATAAAGAAAGCGA 99 ** * **** * * * **** * ** *** *** *** * consensus_9793#0 TATTGTTTAAATACATGGNAAGCGTCTTTACAATGGTATATTATGATATCTACTCATCTT 1619 consensus_9793#1 TTTTTGTGGAATAC---------------------------------------------- 113 * ** * ***** consensus_9793#0 AGCATGCGCATTAAAAATAAATATT 1644 consensus_9793#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||