These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence [CCAANAATTTTGCACGAGGGGACAGGAGCAACAGGAAATGATGAAGGGTTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCATCGCTCGGCGTCGGAAAAAGCTCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACAAGAAGAATCATGATTGGGATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAGNCCCAGTACGTTGTCAACCTCCGACTCAAAAAACGT-AGTTGTCCTCTGGTTGGTGAATCTCATCCACCTGANTATATGATTAAAGAAAAAG-AAAATCTAGACAGAACTCCACTGGGACTGACTNATTTNTCAGTGTTCTC-AGTACTCTAAA-TNTCCAGCGAANNTATT-CCTGGTNTTA-TTCTCTCA-CACTCA-CATC-ATAC-CATGATC--TGGCATAGC--TTTTAG-AAG-AAAGAAA-TATGTCACATCTGCTTCTGAAGGGATCANGATNATNGNTGATGTCCGATAATGCTTAACTATAACATACTATTATTTGGAGCGTTCCAACGTGAGTA] [+] EMBL CD080812 [CCAANAATTTTGCACGAGGGGACAGGAGCAACAGGAAATGATGAAGGGTTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCATCGCTCGGCGTCGGAAAAAGCTCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACAAGAAGAATCATGATTGGGATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAGNCCCAGTACGTTGTCAACCTCCGACTCAAAAAACGT AGTTGTCCTCTGGTTGGTGAATCTCATCCACCTGANTATATGATTAAAGAAAAAG AAAATCTAGACAGAACTCCACTGGGACTGACTNATTTNTCAGTGTTCTC AGTACTCTAAA TNTCCAGCGAANNTATT CCTGGTNTTA TTCTCTCA CACTCA CATC ATAC CATGATC TGGCATAGC TTTTAG AAG AAAGAAA TATGTCACATCTGCTTCTGAAGGGATCANGATNATNGNTGATGTCCGATAATGCTTAACTATAACATACTATTATTTGGAGCGTTCCAACGTGAGTA] [+] EMBL CD077340 [ agatatGGA AGGAGCAACAGGAAAAGATGAAGGGTTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTC AAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCATCGCTCGGCGTCGGAAAAAGCTCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACAAGAAGAATCATGATTGGGATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAA ] [+] EMBL CD078864 [ TGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGCGAAGCTAAGTTTAACAGTTCTAGGACTTCTACAAATCAGCATCATGGTCCCAGTTATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTCAAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAG CCCAGTACGTTGTCAACCTCCGACTC AAAAACGTAAGTTGTCCTCT GTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTT TCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAAATTATTCCCTGTTTTTATTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTTTTTAGAAAGAAAAGAAATTATGTtccaaca ] consensusID : consensus_9801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 537 fasta sequence [AGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCCGCAGGCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAACTTATTCCCTGTTTTTATTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTTTTTAGAAAAGAAAAGAAATTATGTTCCAACATCTTGCTTTCCTGATAAGGAATACAGTGTATTTATTGTATGTATGTACGTATTAATGTCTCTTCACACTAGTAAACATTTTACTATTTTATTTTTTGGAAGCCTGTATTTCGCAAACACGTTGAAGTAATATAGAGTAATG] [-] EMBL CD073324 [AGGAGATGAACCTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAAATTATTCCCTGTTTTTATTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTTTTTAGAAAAGAAAAGAAATTATGTTCCAACATCTTGCTTTCCTGATAAGGAATACAGTGTATTTATTGTATGTATGTACGTATTAATGTCTCTTCACACTAGTAAACATTTTACTATTTTATTTTTTGGAAGCCTGTATTTCGCAAACACGTTGAAGTAATATAGAGTAATG] [+] EMBL CD060752 [ CGCAGGCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCTGCGAACCTATgggt ] [+] EMBL CD060739 [ CGCAGGCATCTGTCATCACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCt ] [-] EMBL CD060970 [ CACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATATAGACAGATCTCCACTGGAACTGACTAATTTTCAGTGTTCTCAAGTACTGTAAATTCTCCAGCGAACgtgg ] [-] EMBL CD061015 [ CACACAGTAGCCCAGTACGTTGTCAACCTCCGACTCAAAAACGTAAGTTGTCCTCTGTTGGTGAATCTCATCCACCTGATAATATGATTAAAGAAAAAGAAAAATATAGACAGAACTCCACTGGAACTGACTAATTTTCAGTG TCTCAAGTACTCT AATTTT CATCGAACT ] consensusID : consensus_9801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [CGCTATAGATGCTCTCATCGCTCGGNGTTCGGAAAAAGCTCGAAACAGAATTTGNGGAAAATTTACAAGCACGGNGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACANGAAGAATCATGATTGGNATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGNGANGCTAAGTTTAACAGCTCTAGGACTNCTACANCCTCAGNCANCATNNNGNNCNNANTNNNANTCCACCGNGT] [+] EMBL SMRAP103 [CGCTATAGATGCTCTCATCGCTCGGNGTTCGGAAAAAGCTCGAAACAGAATTTGNGGAAAATTTACAAGCACGGNGTCGTATCGCTTCAAGTAATAATGATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCTGACANGAAGAATCATGATTGGNATGAACATGGGAAATCCGATAAACAATGGTCTTCATTAGGTGATATTTCCAGNGANGCTAAGTTTAACAGCTCTAGGACTNCTACANCCTCAGNCANCATNNNGNNCNNANTNNNANTCCACCGNGT] consensusID : consensus_9801#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 215 fasta sequence [TTTTTGTCGAACTTCAAAGCCACTATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGGTTGGTTTTTTACATTTGTTTATTAAAAACACTGTACACTATTGTTGTTTATTAACTACATAAATACTTAATTCTAAATTCATCGTCATAAGATCTACGTTCAGTACACCTACG] [+] EMBL CD087934 [TTTTTGTCGAACTTCAAAGCCACTATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGGTTGGTTTTTTACATTTGTTTATTAAAAACACTGTACACTATTGTTGTTTATTAACTACATAAATACTTAATTCTAAATTCATCGTCATAAGATCTACGTTCAGTACACCTACG] [+] EMBL CD087920 [TTTTTGTCGTACTTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGGTTCGCGCTATAGATGGTTGGTTTTTTACATTTATTTATTAAAAACACTGTACACTATTGTTGTNTATTAACTACATAAATACTTAATTCTAAATTCATCGTCTTAAGATCTACGTTCAGTACACCTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9801#0 CCAANAATTTTGCACGAGGGGACAGGAGCAACAGGAAATGATGAAGGGTTTTTGTCGTAC 60 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 -----------------------------------------AGGAGATGAACCTCAATTA 19 consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 TTCAAAGCCACCATATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCG 120 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAAAAAAACAA 79 consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 TATAGAAGTGGCGGTTCGCGCTATAGATGCTCTCAT---CGCTCGGCGT-CGGAAAAAGC 176 consensus_9801#2 ------------------CGCTATAGATGCTCTCAT---CGCTCGGNGTTCGGAAAAAGC 39 consensus_9801#1 AACACATCTCCTTTATCATCATCTAAACGATCCCGCAGGCATCTGTCATCACACAGTAGC 139 consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 TCGAAACAGAATTTGAGGAAAATTTACAAGCACGGCGTCGTATCGCTTCAAGTAATAATG 236 consensus_9801#2 TCGAAACAGAATTTGNGGAAAATTTACAAGCACGGNGTCGTATCGCTTCAAGTAATAATG 99 consensus_9801#1 CCAGTACGTTGTCAACCTCCGACTCAAAAACGTA-AGTTGT-CCTCTGTTGGTGAATCTC 197 consensus_9801#3 ----------------------------------TTTTTGTCGAACTTCAAAGCCACTAT 26 * ** ** consensus_9801#0 ATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCT-GACAAGAAGAATCATGATTGG 295 consensus_9801#2 ATCCATCTGATAATAAGGTAAACAAAACTGAGGATTCT-GACANGAAGAATCATGATTGG 158 consensus_9801#1 ATCCACCTGATAATATGATTAAAGAAAAAGAAAAATCTAGACAGAACTCCACTGGAACTG 257 consensus_9801#3 ATATATTTTATCGCCCGAAAATTCACAATGAAGAGTCAAAGTGGCGTATAGAAGTGGCGG 86 ** * * ** * * * * ** * ** * consensus_9801#0 GATGAACATGGGAAATCCGATAAACAATGG-TCTTCATTAGGTGATATTTCCAGCGAAGC 354 consensus_9801#2 NATGAACATGGGAAATCCGATAAACAATGG-TCTTCATTAGGTGATATTTCCAGNGANGC 217 consensus_9801#1 ACTAATTTTCAGTGTTCTCAAGTACTCTAAATTTTCCAGCGAACTTATTCCCTGTTTTTA 317 consensus_9801#3 TTCGCGCTATAGATGGTTGGTTTTTTACAT-TTGTTTATTAAAAACACTGTACACTATTG 145 * * * * * consensus_9801#0 TAAGTTTAACAGTTC--TAGGACTTC-TACAA-----ATCAGCATCAT--GGTCCCAGTT 404 consensus_9801#2 TAAGTTTAACAGCTC--TAGGACTNC-TACANCCTCAGNCANCATNNN--GNNCNNANTN 272 consensus_9801#1 TTTCTCTCACCACTCATCATCAATACACATGATCATTGTCATAGCTTT--TTTAGAAAAG 375 consensus_9801#3 TT-GTTTATTAACTA--CATAAATACTTAATTCTAAATTCATCGTCATAAGATCTACGTT 202 * * * * * * * * * ** consensus_9801#0 ATAATTCACCGCGTTTATCGAATACTTTTATTAGCAAAAACTCCCATAACTCTCATCGTC 464 consensus_9801#2 NNANTCCACCGNGT---------------------------------------------- 286 consensus_9801#1 AAAAGAAATTATGTTCCAACATCTTGCTTTCCTGATAAGGAATACAGTGTATTTATTGTA 435 consensus_9801#3 CAGTACACCTACG----------------------------------------------- 215 * consensus_9801#0 AAGAATTAGAAGCTGGTGAACTATCAGATGGCAGTGAGACATTCGCTTTAGGAGATGAAC 524 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 TGTATGTACGTATTAATGTCTCTTCACACTAGTAAACATTTTACTATTTTATTTTTTGGA 495 consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 CTCAATTAATGGAGGAAGACCAGCATCATGCTATATATACAGAATCTCCAAATCGTGCAA 584 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 AGCCTGTATTTCGCAAACACGTTGAAGTAATATAGAGTAATG------------------ 537 consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 AAAAACAAAACACATCTCCTTTATCATCATCTAAACGATCCAGTAGTCATCTGTCATCAC 644 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ------------------------------------------------------------ consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 ACAGTAGNCCCAGTACGTTGTCAACCTCCGACTCAAAAAACGTAGTTGTCCTCTGGTTGG 704 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ------------------------------------------------------------ consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 TGAATCTCATCCACCTGANTATATGATTAAAGAAAAAGAAAATCTAGACAGAACTCCACT 764 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ------------------------------------------------------------ consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 GGGACTGACTNATTTNTCAGTGTTCTCAGTACTCTAAATNTCCAGCGAANNTATTCCTGG 824 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ------------------------------------------------------------ consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 TNTTATTCTCTCACACTCACATCATACCATGATCTGGCATAGCTTTTAGAAGAAAGAAAT 884 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ------------------------------------------------------------ consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 ATGTCACATCTGCTTCTGAAGGGATCANGATNATNGNTGATGTCCGATAATGCTTAACTA 944 consensus_9801#2 ------------------------------------------------------------ consensus_9801#1 ------------------------------------------------------------ consensus_9801#3 ------------------------------------------------------------ consensus_9801#0 TAACATACTATTATTTGGAGCGTTCCAACGTGAGTA 980 consensus_9801#2 ------------------------------------ consensus_9801#1 ------------------------------------ consensus_9801#3 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||