These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 606 fasta sequence [ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC-TGTC-TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATATT] [+] EMBL SMCBP [ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC TGTC TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATAT ] [+] EMBL AW497743 [ TACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGA AAAATAATCAAGGAAACTGATATGTATAGTGATGG AAAATTTCC TAGAAGAGTATATGTATGCCCTCAAAAAAC CCCCCCTCGTG ] [+] EMBL CD152471 [ GACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTTTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACC ] [+] EMBL BE505105 [ AGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAG CAAAATAATCAAGGNAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGG AAAGTTTCTATCAAAGAATTGGNTGNATTTCTAAAAACCTCCGGGATGGNTATAGACCAAAATAGNTTACGNAATTGGGTGNCACAAAATNNCAAAA ] [-] EMBL CD119472 [ TCAAGGGAACTGATATGAATAGTGATGGGAAAAATTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTC ] [+] EMBL AW497858 [ TGAGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC TGTC TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAA ] [+] EMBL AW063011 [ agadAGTTCTTAGCATATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCATGTCATGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATATT] [+] EMBL AI764810 [ AGTTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATC TGTC TGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCAAATAATAATTTCTATAATTAAATAAAAATATT] consensusID : consensus_9831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGAGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGGATGACACAAAATGACAAAAACAAGGGTGGTGAACTAGATTATGATGAGTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGGTCAGATGATTTTT] [+] EMBL AI740307 [AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACGCAATAGACAAAGACAAAAATGGGTTTCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTGTCCAAATGTCGCAGAGAAACTGATATGAATAGTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCTATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGGATGACACAAAATGACAAAAACAAGGGTGGTGAACTAGATTATGATGAGTCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGGTCAGATGATTTTT] consensusID : consensus_9831#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTTGTCCCAAATGTCGCAGACTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACCAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCCAAATAATAATTTNCTA] [-] EMBL SM513 [AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAAGAAGTTGGTGTTTTGTCCCAAATGTCGCAGACTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAAAAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAAAATAGTTTACGTAATTGGATGACACAAAATGACCAAAAACAAGGATGGTGAACTAGATTATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTTAATAATGGTCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTTATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCCAAATAATAATTTNCTA] consensusID : consensus_9831#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [ATGTAGAAAATAATCAAGGGGACTCATATGGGGGAGTGGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGGTAAGTTTATTGGTACTTGATAAGCAAAGTAATTTTTTTTTAATATCTTTGAAAGTTGAGCGCTTTTGATTGACAGCATAATTATAAAAGAGGATATCATCTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCTAATCAGATTTATTCAAGGATGTAATATTTAATTAGCTGATAATAAACACCTTTGAAGA] [+] EMBL AI740300 [ATGTAGAAAATAATCAAGGGGACTCATATGGGGGAGTGGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTGAAAAGTGGTAAGTTTATTGGTACTTGATAAGCAAAGTAATTTTTTTTTAATATCTTTGAAAGTTGAGCGCTTTTGATTGACAGCATAATTATAAAAGAGGATATCATCTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCTAATCAGATTTATTCAAGGATGTAATATTTAATTAGCTGATAATAAACACCTTTGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9831#0 ---ATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACG 57 consensus_9831#2 ------------------------------------------------------------ consensus_9831#1 AATATACACCTTATCTCGAAATAATGTCAGAGGAAAAACAATGGACTGAAGTTTTCCACG 60 consensus_9831#3 ------------------------------------------------------------ consensus_9831#0 CAATAGACAAAGACAAAAATGGGTTTC-TTACACGTGAAGAAATCGCACAATGCTTAAAA 116 consensus_9831#2 --AAAGCCNAAGCCCAANATGGGTTTCCTTACACGTGAAGAAATCGCACAATGCTTAAAA 58 consensus_9831#1 CAATAGACAAAGACAAAAATGGGTTTC-TTACACGTGAAGAAATCGCACAATGCTTAAAA 119 consensus_9831#3 --------------------------------------------------ATGTAGAAAA 10 *** **** consensus_9831#0 GAAGTTGGTGTTTG--TCCAAATGTCGCAGACAAAATAATCAAGGAAACTGATATGAATA 174 consensus_9831#2 GAAGTTGGTGTTTTGTCCCAAATGTCGCAGAC---------------------------- 90 consensus_9831#1 GAAGTTGGTGTTTG--TCCAAATGTCGCAGAGAAA-------------CTGATATGAATA 164 consensus_9831#3 TAATCAAGGGGACT----CATATGGGGGAGTG---------------------------- 38 ** * * ** *** * ** consensus_9831#0 GTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTG 234 consensus_9831#2 ------------------------------------------------------------ consensus_9831#1 GTGATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCCTCGTG 224 consensus_9831#3 --GATGGAAAAATTTCCTTAGAAGAGTATTTGAATGCACTAAGAAAACTCCCTCC----- 91 consensus_9831#0 AAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAA 294 consensus_9831#2 -------TGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAA 143 consensus_9831#1 AAAAGTGTGTTGCACGATGGAGAGAAGTGTTTCAGTCTATAGACAAGGATGGTTCGGGAA 284 consensus_9831#3 -------TCGTGAAAAGTGGTAAGTTTATTGGTACTTGATAAGCAAAG-TAATTTTTTTT 143 * ** * *** ** * * * *** *** * * ** consensus_9831#0 AAGTTTC-TATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAA 353 consensus_9831#2 AAGTTTCCTATCCAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAA 203 consensus_9831#1 AAGTTTC-TATCAAAGAATTGGATGAATTTCTAAAAACCTCCGGTATGGATATAGACCAA 343 consensus_9831#3 TAATATC---TTTGAAAGTTGAGCGCTTTT-----GATTGACAGCATAATTATAAAAGAG 195 * * ** * * * *** * *** * * * ** **** * * consensus_9831#0 AATAGTTTACGTAATTGG-ATGACACAAAATGAC-AAAAACAAGGATGGTGAACTAGATT 411 consensus_9831#2 AATAGTTTACGTAATTGG-ATGACACAAAATGACCAAAAACAAGGATGGTGAACTAGATT 262 consensus_9831#1 AATAGTTTACGTAATTGGGATGACACAAAATGAC-AAAAACAAGGGTGGTGAACTAGATT 402 consensus_9831#3 GATATCAT------CTGGTAAGAACCAAAATATAGTTAATAAGTAATTCCTAATCAGATT 249 *** * *** * ** ****** ** * * ** ***** consensus_9831#0 ATGATGAGTTC-TTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTT 470 consensus_9831#2 ATGATGAGTTCCTTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTT 322 consensus_9831#1 ATGATGAGTC--TTAGCCTATGTACGTCAAACATACAAGTAATGTTTTGATGACTGGTTT 460 consensus_9831#3 -TATTCAAGGATGTAATATTTAATTAGCTGATA-ATAAACAC--CTTTGAAGA------- 298 * * * ** * * * * * * ** * ***** ** consensus_9831#0 AATAATGG-TCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTT 529 consensus_9831#2 AATAATGG-TCAGATGATTTTTTATCTGTCTGTTTAAATCACTTCTGAAGTGAATAACTT 381 consensus_9831#1 AATAATGGGTCAGATGATTTTT-------------------------------------- 482 consensus_9831#3 ------------------------------------------------------------ consensus_9831#0 ATGTTGTTT-CATTAGAATTAGAAGGTTTAATTAACATGTTTTTC-AAATAATAATTTCT 587 consensus_9831#2 ATGTTGTTTTCATTAGAATTAGAAGGTTTAATTAACATGTTTTTCCAAATAATAATTTNC 441 consensus_9831#1 ------------------------------------------------------------ consensus_9831#3 ------------------------------------------------------------ consensus_9831#0 ATAATTAAATAAAAATATT 606 consensus_9831#2 -TA---------------- 443 consensus_9831#1 ------------------- consensus_9831#3 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||