cluster # 9903

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Schistosoma mansoni
cluster # 9903 cluster # 9903 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9903#0 length = 1673 sequences # 7
consensus_9903#1 length = 946 sequences # 1

consensus_9903#2 length = 683 sequences # 3
consensus_9903#3 length = 302 sequences # 1

consensusID : consensus_9903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1673
fasta sequence

                              [CGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATTTGAGTGCCTTTTCAGCTATCTGAATATGTAATAGAAGTTCTGCCTATGTTCAGATATATTTGCTGTTTGGATTGATAACAACCTATTGGATTGTCTTTTTCACCATATAATTGAACAGTTATCTGCTAATAGCTCTCTGATTCCAAGAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGCAGGCAATCTTCAGAGTTTCTGGAAGCAAAATGATTATTCGGAAACTAAGACTGATTGCACTTCAAAGATCCATAATTTTGCGTATAATTCTCCTTTTGTTTGCAATCGCTCTGTCTTACCATATTTTAATTGGAGTTTACACCGTAAATGAACCTGATGTAAATTGTATTTCGAATAAACCACAACAAATTGTATTTATTGGAGGTTACCCAAGAAGTGGCACCACTCTTATGCGTGTCTTGTTAGATGTACATCCAATGATTCGGTGCGGTCCCGAAACTAGAGTAATACCCAAGATCCTCAACTTACGAGGTCAGTGGAGTANAGGANAAGAAAGTGAACGACTTAAAGCTGCTGGTTTATATCCTGTTGCAGTCGATTCTGCTGTACGATCATTTATATCGTCTTTGATCAAAAATGCTGGAGAAAATGCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCACAACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAATTTCTGCATGAACTGTTTGAATTCCTCGAAATACCATGGGATCCGATCGTCCTTCATCATCAAACCGTCATTAGTGATACCTCTCTAAACAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATAC-CCGAGAAAGTGATGTACTGAAAACACTTGGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTTTAACTTCTGTTATGGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATATTCAACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGTTTTATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAATTTTGAATCCAGTTTATTGTTTTAAAGGA-ATAACAAGTAGATATATGAGTGAGACAATGTATAAACGAAATTTCGAAGTATTGGCCAGTTAATATTTTTTTATTTA-TATTTGAATAAATTTTT]

[+] EMBL CD078915             [CGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATTTGAGTGCCTTTTCAGCTATCTGAATATGTAATAGAAGTTCTGCCTATGTTCAGATATATTTGCTGTTTGGATTGATAACAACCTATTGGATTGTCTTTTTCACCATATAATTGAACAGTTATCTGCTAATAGCTCTCTGATTCCAAGAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGCAGGCAATCTTCAGAGTTTCTGGAAGCAAAATGATTATTCGGAAACTAAGACTGATTGCACTTCAAAGATCCATAATTTTGCGTATAATTCTCCTTTTGTTTGCAATCGCTCTGTCTTACCATATTTTAATTGGAGTTTACACCGTAAATGAACCTGATGTAAATTGTATTTCGAATAAACCACAACAAATTGTATTTATTGGAGGTTACCCAAGAAGTGGCACCACTCTTATGCGTGTCTTGTTAGATGTACATCCAATGATTCGGTGCGGTCCCGAAACTAGAGTAATACCCAAGATCCTCAACTTACGAGGTCAGTGGAGTANAGGANAAGAAAGTGAACGACTTANAGCTGCTGGTTTATATCCTGTTGCAGTCGATTCTGCTGTACGATCATTTATATCGTCTTTGATCANAAATGCTGGAGAANATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD084261             [                                                                                                                                                                                                                                                                                                                                                                                   CGTAAATGAACCTGATGTAAATTGTATTTCGAATAAACCACAACAAATTGTATTTATTGGAGGTTACCCAAGAAGTGGCACCACTCTTATGCGTGTCTTGTTAGATGTACATCCAATGATTCGGTGCGGTCCCGAAACTAGAGTAATACCCAAGATCCTCAACTTACGAGGTCAGTGGAGTAAAGGAAAAGAAAGTGAACGACTTAAAGCTGCTGGTTTATATCCTGTTGCAGTCGATTCTGCTGTACGATCATTTATATCGTCTTTGATCAAAAATGCTGGAGAAAATGCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD095949             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAGAAAGTGAACGACTTAAAGCTGCTGGTTTATATCCTGTTGCAGTCGATTCTGCTGTACGATCATTTATATCGTCTTTGATCAAAAATGCTGGAGAAAATGCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGGATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTTCCATTAAAGGAGAACCTAAACTTATAGATGAAAGATTTTTTGCTTGGGAAAATCGAGTAGGTCAGATGTTAAAATCATGTGCAGCTGTCGGACCTAAACGATGCACAACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAATTTCTGCATGAACTGTTTGAATTCCTCGAAATACCATGGGATCCGATCGTCCTTCATCATCAAACCGTCATTAGTGATACCTCTCTAAACAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD073371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATACGCCGAGAAAGTGATGTACTGAAAACACTTGGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTTTAACTTCTGTTATGGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATATTCAACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGTTTTATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAATTTTGAATCCAGTTTATTGTTTTAAAGGA ATAACAAGTAGATATATGAGTGAGACAATGTATAAACGAAATTTCGAAGTATTGGCCAGTTAATATTTTTTTATTTA TATTTGAATAAATTTTT]
[-] EMBL CD075254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTGCCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTTTAACTTCTGTTATTGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATATTCAACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGTTTTATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAAT                                                                                                                            ]
[-] EMBL AI026209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cctcTCTC TC ATAC CCCAG AAGTGATGTACTG AAACACTTGGTTACGCTGATTTGGG GTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGGTATTTTAACTTCTGTTATGGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATATTCAACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGTTTTATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAATTTTGAATCCAGTTTATTGTTTTAAAGGANNCCCCAAGTAGATATATGAGTGAGACAATGTATAAACGAAATTTCGAAGTATTGGCCAGTTAATATTTTTTTATTTA TATTTGAATAAATTTTT]
[-] EMBL CD076031             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aca CCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCCCAATTCAGACGGATATTTTAACTTCTGTTATTGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATATTCAACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGTTTTATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAATTTTGAATCCAGTTTATTGTTTTAAAGGA ATAACAAGTAGATATATGAGTGAGACAATGTATAAACGAAATTTCGAAGTATTGGCCAGTTAATATTTTTTTATTTAGGATTTGAATAAATTTTT]




>consensus_9903#0
CGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATTTGAGTGCCTTTTCAGCTATC
TGAATATGTAATAGAAGTTCTGCCTATGTTCAGATATATTTGCTGTTTGGATTGATAACA
ACCTATTGGATTGTCTTTTTCACCATATAATTGAACAGTTATCTGCTAATAGCTCTCTGA
TTCCAAGAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGCAGGCAATCTTC
AGAGTTTCTGGAAGCAAAATGATTATTCGGAAACTAAGACTGATTGCACTTCAAAGATCC
ATAATTTTGCGTATAATTCTCCTTTTGTTTGCAATCGCTCTGTCTTACCATATTTTAATT
GGAGTTTACACCGTAAATGAACCTGATGTAAATTGTATTTCGAATAAACCACAACAAATT
GTATTTATTGGAGGTTACCCAAGAAGTGGCACCACTCTTATGCGTGTCTTGTTAGATGTA
CATCCAATGATTCGGTGCGGTCCCGAAACTAGAGTAATACCCAAGATCCTCAACTTACGA
GGTCAGTGGAGTANAGGANAAGAAAGTGAACGACTTAAAGCTGCTGGTTTATATCCTGTT
GCAGTCGATTCTGCTGTACGATCATTTATATCGTCTTTGATCAAAAATGCTGGAGAAAAT
GCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAA
ATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCA
CTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTT
GCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGA
TGCACAACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAATTTCTGCATGAACTG
TTTGAATTCCTCGAAATACCATGGGATCCGATCGTCCTTCATCATCAAACCGTCATTAGT
GATACCTCTCTAAACAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTG
GCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCA
ATACCCGAGAAAGTGATGTACTGAAAACACTTGGTTACGCTGATTTGGGTGTACCACCTG
ATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCAC
AATTCAGACGGATATTTTAACTTCTGTTATGGTTGTCGGTGATGGTGATTGTTTTTGGTG
ACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAACTT
AATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATATTC
AACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGTTTT
ATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAATTTTGAATCC
AGTTTATTGTTTTAAAGGAATAACAAGTAGATATATGAGTGAGACAATGTATAAACGAAA
TTTCGAAGTATTGGCCAGTTAATATTTTTTTATTTATATTTGAATAAATTTTT

consensusID : consensus_9903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 946
fasta sequence

                              [CGAGCCAGATTCGGCCGAGGGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCCATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAAGTTTTGCGTGAACTGTTTGAATTCCTGGAAATACCATGGGATCCAATCGTTCTTCATCATCAAACGGTCATGAACAATAGCTCTCTAAGCAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTTTAACTTCTGTTATTGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTNTGTATTGTAGTAATTNTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAAATATAATNNATATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAAATATTCACCACATATCTTTATCTGTGAATATGGGCCTTNNATGNTNCATNNGTGACTTGNTTTATTNTATATCATACTATATGTGATACAAGAAATTNTTTGATATATTNTGAAATCAGTTATGGTTAAGGNATACAGTGAATTTGATGGGACTGGTAACGAATTCGAGATGGCCAGTAATTTTTTTATATTGAAA]

[+] EMBL CD082432             [CGAGCCAGATTCGGCCGAGGGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCCATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAAGTTTTGCGTGAACTGTTTGAATTCCTGGAAATACCATGGGATCCAATCGTTCTTCATCATCAAACGGTCATGAACAATAGCTCTCTAAGCAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTTTAACTTCTGTTATTGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTNTGTATTGTAGTAATTNTCTAACTTCCTATTCATATAACTTCATATATCTAACTTAAATATAATNNATATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAAATATTCACCACATATCTTTATCTGTGAATATGGGCCTTNNATGNTNCATNNGTGACTTGNTTTATTNTATATCATACTATATGTGATACAAGAAATTNTTTGATATATTNTGAAATCAGTTATGGTTAAGGNATACAGTGAATTTGATGGGACTGGTAACGAATTCGAGATGGCCAGTAATTTTTTTATATTGAAA]




>consensus_9903#1
CGAGCCAGATTCGGCCGAGGGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTC
CATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAA
AGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGAT
TTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAATCAAATATGAATCATT
GGTACTCAGACCAAGTGAAGTTTTGCGTGAACTGTTTGAATTCCTGGAAATACCATGGGA
TCCAATCGTTCTTCATCATCAAACGGTCATGAACAATAGCTCTCTAAGCAAACTCGAACC
GAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAA
TGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAA
AACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGT
AGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTTTAACTTCT
GTTATTGTTGTCGGTGATGGTGATTGTTTTTGGTGACATTNTGTATTGTAGTAATTNTCT
AACTTCCTATTCATATAACTTCATATATCTAACTTAAATATAATNNATATGAGATCTGTG
AAATTTCTCCTTATCTCTCACTTTGAAGAAATATTCACCACATATCTTTATCTGTGAATA
TGGGCCTTNNATGNTNCATNNGTGACTTGNTTTATTNTATATCATACTATATGTGATACA
AGAAATTNTTTGATATATTNTGAAATCAGTTATGGTTAAGGNATACAGTGAATTTGATGG
GACTGGTAACGAATTCGAGATGGCCAGTAATTTTTTTATATTGAAA

consensusID : consensus_9903#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence

                              [GGCCANAATTCGGCACGAGGTCGGAGAAAATGCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAAGTTTTGCGTGAACTGTTTGAATTCCTGGAAATACCATGGGATCCAATCGTTCTTCATCATCAAACGGTCATGAACAATAGCTCTCTAAGCAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTNTAACTTCTGTTATTGTTGTCGGTGATGGTGATTG]

[+] EMBL CD081428             [GGCCANAATTCGGCACGAGGTCGGAGAAAATGCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAAGTTTTGCGTGAACTGTTTGAATTCCTGGAAATACCATGGGATCCAATCGTTCTTCATCATCAAACGGTCATGAACAATAGCTCTCTAAGCAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTNTAACTTCTGTTATTGTTGTCGGTGATGGTGATTG]
[-] EMBL CD093379             [                                                        CACTATCATTTATTCATCTTGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAAT                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD079183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTCATGGGCTTCCAATGGATCGGAGTTGCCTGAATCCTTCATATGATCAATACACCGAGAAAGCGATGTACTGAAAACACTTAGTTACGCTGATTAGGGTGTACCACCTGATTACGGGACT                                                                                                    ]




>consensus_9903#2
GGCCANAATTCGGCACGAGGTCGGAGAAAATGCACCTGTTCTGTGTAACAAAGACCCACT
ATCATTTATTCATCTTGAATATTTGGCGGAAATATTTCCTGAGGCGAAATTCGTTCACAT
GGTACGTGATGGGCGTGCTGTGATCAATTCACTAGTAAAACGAAAGGTTACCATTAAAGG
AGCACCTAAACTAATAGATGAAAAATTTTTTGCATGGGAAAATCGAGTAGGTCAGATTTT
AAAATCATGTACAGCTGTCGGACCTAAACGATGCAGCACAATCAAATATGAATCATTGGT
ACTCAGACCAAGTGAAGTTTTGCGTGAACTGTTTGAATTCCTGGAAATACCATGGGATCC
AATCGTTCTTCATCATCAAACGGTCATGAACAATAGCTCTCTAAGCAAACTCGAACCGAG
TACTTCACAGGTTGTTCATCCAATCCACTTGGCTTCACTAACTTCATGGGCTTCCAATGG
ATCGGTGTTGCCTGAATCCTTCATCTCATCAATACACCGAGAAAGTGATGTACTGAAAAC
ACTTAGTTACGCTGATTTGGGTGTACCACCTGATTACGGTACTCCAGAGAACCAGGTAGT
CAATATGACTAGTCACCTGATCAATGATCCACAATTCAGACGGATATTNTAACTTCTGTT
ATTGTTGTCGGTGATGGTGATTG

consensusID : consensus_9903#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [CTGAAACCTTTTCTGTGCAGTGTGTCCTATTCTTCGTGTCATAATCAATCATCATACTCAGNAAACGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATCTGAGTGCCTTTNCAGCTATCTGAATATGTAATAGATTGTCTTTTNCACCATATAATTGAACAGTTATCTGCTAATAGCNCTCTGATTCCAAGAAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGCNGGCAATCTTCAGAGTTTCTGGGAAGCAAAATGATTATTCGGAAACTAAGACTGGANTGCAC]

[+] EMBL AA559730             [CTGAAACCTTTTCTGTGCAGTGTGTCCTATTCTTCGTGTCATAATCAATCATCATACTCAGNAAACGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATCTGAGTGCCTTTNCAGCTATCTGAATATGTAATAGATTGTCTTTTNCACCATATAATTGAACAGTTATCTGCTAATAGCNCTCTGATTCCAAGAAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGCNGGCAATCTTCAGAGTTTCTGGGAAGCAAAATGATTATTCGGAAACTAAGACTGGANTGCAC]




>consensus_9903#3
CTGAAACCTTTTCTGTGCAGTGTGTCCTATTCTTCGTGTCATAATCAATCATCATACTCA
GNAAACGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATCTGAGTGCCTTTNCAG
CTATCTGAATATGTAATAGATTGTCTTTTNCACCATATAATTGAACAGTTATCTGCTAAT
AGCNCTCTGATTCCAAGAAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGC
NGGCAATCTTCAGAGTTTCTGGGAAGCAAAATGATTATTCGGAAACTAAGACTGGANTGC
AC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      CGGTTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATTTGAGTGCCTTTTCAGCTATC 60
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      TGAATATGTAATAGAAGTTCTGCCTATGTTCAGATATATTTGCTGTTTGGATTGATAACA 120
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      ACCTATTGGATTGTCTTTTTCACCATATAATTGAACAGTTATCTGCTAATAGCTCTCTGA 180
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      TTCCAAGAAGCATTCAAGTTTCTCTCCAAATAATAAAGAAAATCATTGCAGGCAATCTTC 240
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      AGAGTTTCTGGAAGCAAAATGATTATTCGGAAACTAAGACTGATTGCACTTCAAAGATCC 300
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      ATAATTTTGCGTATAATTCTCCTTTTGTTTGCAATCGCTCTGTCTTACCATATTTTAATT 360
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      GGAGTTTACACCGTAAATGAACCTGATGTAAATTGTATTTCGAATAAACCACAACAAATT 420
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      GTATTTATTGGAGGTTACCCAAGAAGTGGCACCACTCTTATGCGTGTCTTGTTAGATGTA 480
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      CATCCAATGATTCGGTGCGGTCCCGAAACTAGAGTAATACCCAAGATCCTCAACTTACGA 540
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      GGTCAGTGGAGTANAGGANAAGAAAGTGAACGACTTAAAGCTGCTGGTTTATATCCTGTT 600
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------------------------------------------
consensus_9903#2      ----------------------------GGCCANAATTCGGCACGAG-GTCGGAGAAAAT 31
consensus_9903#0      GCAGTCGATTCTGCTGTACGATCATTTATATCGTCTTTGATCAAAAATGCTGGAGAAAAT 660
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ------------------------CGAGCCAGATTCGGCCGAGG-GAATATTTGGCGGAA 35
consensus_9903#2      GCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAA 91
consensus_9903#0      GCACCTGTTCTGTGTAACAAAGACCCACTATCATTTATTCATCTTGAATATTTGGCGGAA 720
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ATATTTCCTGAGGCGAAATTCGTTC-CATGGTACGTGATGGGCGTGCTGTGATCAATTCA 94
consensus_9903#2      ATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCA 151
consensus_9903#0      ATATTTCCTGAGGCGAAATTCGTTCACATGGTACGTGATGGGCGTGCTGTGATCAATTCA 780
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      CTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTT 154
consensus_9903#2      CTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTT 211
consensus_9903#0      CTAGTAAAACGAAAGGTTACCATTAAAGGAGCACCTAAACTAATAGATGAAAAATTTTTT 840
consensus_9903#3      ----------------------------------------------CTGAAACCTTTTCT 14
                                                                     *****  **** *

consensus_9903#1      GCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGA 214
consensus_9903#2      GCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGA 271
consensus_9903#0      GCATGGGAAAATCGAGTAGGTCAGATTTTAAAATCATGTACAGCTGTCGGACCTAAACGA 900
consensus_9903#3      GTGCAGTGTGTCC---TATTCTTCGTGTCATAATCAATCATCATACTCAGN---AAACGG 68
                      *    *      *   **       * * * *****   *      ** *    ***** 

consensus_9903#1      TGCAGCACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAAGTTTTGCGTGAACTG 274
consensus_9903#2      TGCAGCACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAAGTTTTGCGTGAACTG 331
consensus_9903#0      TGCACAACAATCAAATATGAATCATTGGTACTCAGACCAAGTGAATTTCTGCATGAACTG 960
consensus_9903#3      TTCTTGTCACCCAGAAAACGTACATTTGTAGTTTATCTGAGTG--CCTTTNC---AGCTA 123
                      * *    **  ** * *     **** *** *    *  ****    * * *   * ** 

consensus_9903#1      TTTGAATTCCTGGAAATACCATGGGATCCAATCGTTCTTCATCATCAAACGGTCATGAAC 334
consensus_9903#2      TTTGAATTCCTGGAAATACCATGGGATCCAATCGTTCTTCATCATCAAACGGTCATGAAC 391
consensus_9903#0      TTTGAATTCCTCGAAATACCATGGGATCCGATCGTCCTTCATCATCAAACCGTCATTAGT 1020
consensus_9903#3      TCTGAATAT---GTAATAGATTG----TCTTTTNCACCATATAATTGAACAGTTATCTGC 176
                      * *****     * ****   **     *  *    *   ** **  *** ** **    

consensus_9903#1      -AATAGCTCTCTAAGCAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTT 393
consensus_9903#2      -AATAGCTCTCTAAGCAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTT 450
consensus_9903#0      -GATACCTCTCTAAACAAACTCGAACCGAGTACTTCACAGGTTGTTCATCCAATCCACTT 1079
consensus_9903#3      TAATAGCNCTCTGA-----TTCCAAGAAAGCATT---CAAGTTTCTC-TCCAAATAA--- 224
                        *** * **** *      ** **   ** * *   ** ***  ** *****   *   

consensus_9903#1      GGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATC-TCAT 452
consensus_9903#2      GGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATC-TCAT 509
consensus_9903#0      GGCTTCACTAACTTCATGGGCTTCCAATGGATCGGTGTTGCCTGAATCCTTCATC-TCAT 1138
consensus_9903#3      ----TAAAGAAAATCATTG-CNGGCAATCT-TCAGAGTTTCTGGGAAGCAAAATGATTAT 278
                          * *  **  **** * *   ****   ** * *** *  * *  *   **  * **

consensus_9903#1      CAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCAC 512
consensus_9903#2      CAATACACCGAGAAAGTGATGTACTGAAAACACTTAGTTACGCTGATTTGGGTGTACCAC 569
consensus_9903#0      CAATAC-CCGAGAAAGTGATGTACTGAAAACACTTGGTTACGCTGATTTGGGTGTACCAC 1197
consensus_9903#3      TCGGAAACTAAGACTGGANTGCAC------------------------------------ 302
                          *  *  ***  *   ** **                                    

consensus_9903#1      CTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATC 572
consensus_9903#2      CTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATC 629
consensus_9903#0      CTGATTACGGTACTCCAGAGAACCAGGTAGTCAATATGACTAGTCACCTGATCAATGATC 1257
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      CACAATTCAGACGGATATTTTAACTTCTGTTATTGTTGTCGGTGATGGTGATTGTTTTTG 632
consensus_9903#2      CACAATTCAGACGGATATTNTAACTTCTGTTATTGTTGTCGGTGATGGTGATTG------ 683
consensus_9903#0      CACAATTCAGACGGATATTTTAACTTCTGTTATGGTTGTCGGTGATGGTGATTGTTTTTG 1317
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      GTGACATTNTGTATTGTAGTAATTNTCTAACTTCCTATTCATATAACTTCATATATCTAA 692
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      GTGACATTTTGTATTGTAGTAATTTTCTAACTTCCTATTCATATAACTTCATATATCTAA 1377
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      CTTAAATATAATNNATATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAAAT 752
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      CTTAATAATAATAATAATGAGATCTGTGAAATTTCTCCTTATCTCTCACTTTGAAGAATA 1437
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      ATTCACCA-CATATCTTTATCTGTGAATATGGGCCTTNNATGNTNCATNNGTGACTTGNT 811
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      TTCAACCAACATATCTTTATCTGTGATTATGGTCCTTTATTGTTTCCATGTTGACTTTGT 1497
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      TTATTNTATAT---CATACTATATGTGATACAAGAAATTNTTTGATATATTNTGAAATCA 868
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      TTTATTTTTATATACATACTATATGTGATAACAAGAAATTTTTTGAATAATAATTTTGAA 1557
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      GTTATGGTTAAGGNATACAGTGAATTTGATGGGACTGGTAACGAATTCGAGATGGCCAGT 928
consensus_9903#2      ------------------------------------------------------------
consensus_9903#0      TCCAGTTTATTGTTTTAAAGGAATAACAAGTAGATATATGAGTGAGACAATGTATAAACG 1617
consensus_9903#3      ------------------------------------------------------------
                                                                                  

consensus_9903#1      AATTTTTTTATATTGAAA-------------------------------------- 946
consensus_9903#2      --------------------------------------------------------
consensus_9903#0      AAATTTCGAAGTATTGGCCAGTTAATATTTTTTTATTTATATTTGAATAAATTTTT 1673
consensus_9903#3      --------------------------------------------------------