These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1481 fasta sequence [GCACATAATAACAATGAAANAGTGTCACCAGTGAAAATGAGCAATGCACCTGTAACTCATGCAGCACCTACAGGAACTAAAACAACATATTCGTTTAATGACCATTTCATAATTAAAAAACCTGATCTAAGTGAAATACCTGAACAAAAGCTTGCAATTTTATCTAATCAATTTGGTGAACTTAGTGATTCTGTGGAACGTGTTATTATTCGTATATTCGATTCAGCTTTAGTTCCAGGTGGTGCACTACGTGGTGTTGTTTATATATGTCTTAAAGAACCAATTAAATTGAATACTTTAACTGTTACCACAGAAATGATTACTAAAACAATATCTTCAGATGAGAAACAAGATATGGAGAAACGAATACCTATATCATATACTGTTTTGACAGACGACCCATCACTTAGTAAAAGAATGCCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGATCATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAANATTAAAACGTGACAGTAAATGTTCAGTTTCATAACA] [-] EMBL CD183660 [GCACATAATAACAATGAAANAGTGTCACCAGTGAAAATGAGCAATGCACCTGTAACTCATGCAGCACCTACAGGAACTAAAACAACATATTCGTTTAATGACCATTTCATAATTAAAAAACCTGATCTAAGTGAAATACCTGAACAAAAGCTTGCAATTTTATCTAATCAATTTGGTGAACTTAGTGATTCTGTGGAACGTGTTATTATTCGTATATTCGATTCAGCTTTAGTTCCAGGTGGTGCACTACGTGGTGTTGTTTATATATGTCTTAAAGAACCAATTAAATTGAATACTTTAACTGTTACCACAGAAATGATTACTAAAACAATATCTTCAGATGAGAAACAAGATATGGAGAAACGAATACCTATATCATATACTGTTTTGACAGACGACCCATCACTTAGTAAAAGAATGCCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTC ] [+] EMBL AI976327 [ gAGACGACCCATCACTTGGTAAAAGAATGCCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGATCATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGGGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAGTTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAA ] [+] EMBL CD141515 [ GAATTTATTCAGTCACCAGTTAAAGAAGTTAATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGATCATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCANAGTTCTTAGTTGTG ] [+] EMBL AW016947 [ TTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCAT ] [+] EMBL AI977562 [ TTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAGGGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCAATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAATATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCAGCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTNTTATTGAT ] [+] EMBL CD082336 [ agactAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATCTAATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAANATTAAAACGTGACAGTAAATGTTCAGTTTCATAACA] consensusID : consensus_9913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1071 fasta sequence [GNAGGCCAGNAATTCGGCACGAGGTGAAAATTTAATCTTTCAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAATGTTAGATTCTTTTTTCCTCTTTTCTTTNACTTTTATTGTCTTGAATTGGTGTTTGTCATCTACGGTATTGTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAA-TTTCA-TCATTAAAGTTAA] [+] EMBL CD081539 [GNAGGCCAGNAATTCGGCACGAGGTGAAAATTTAATCTTTCAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATACGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGATACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACAGAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAAAGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTATCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTATAAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATCAATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAA ] [-] EMBL CD075363 [ TTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTTATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGTTCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAAT ] [-] EMBL CD075935 [ GGTGAAGGTAATCATATATACGATCCGGAATACTTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACCCCCTTTTTTTTTAGGAGGAAAACTGAGAGAGAAAATCAAT ] [-] EMBL SMAA43845 [ GTTCAGTCTCATAACATTTGGATACAAACAAATCTACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTACAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAATGTTAGATTCTTTTTTCCTCTTTTCTTTNACTTTTATTGTCTTGAATTGGTGTTTGTCATCTACGGTATTGTTACATTGTCCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAA TNTCA TCATaa ] [-] EMBL CD075934 [ ATTGGTGTTTGTCATCTACGGTATTGTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAATTTTCATTCATTAAAGTTAA] [-] EMBL CD075362 [ ATTGGTGTTTGTCATCTACGGTATTGTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTTTTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGTATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAATTTTCATTCATTAAAGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9913#0 GCACATAATAACAATGAAANAGTGTCACCAGTGAAAATGAGCAATGCACCTGTAACTCAT 60 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 GCAGCACCTACAGGAACTAAAACAACATATTCGTTTAATGACCATTTCATAATTAAAAAA 120 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 CCTGATCTAAGTGAAATACCTGAACAAAAGCTTGCAATTTTATCTAATCAATTTGGTGAA 180 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 CTTAGTGATTCTGTGGAACGTGTTATTATTCGTATATTCGATTCAGCTTTAGTTCCAGGT 240 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 GGTGCACTACGTGGTGTTGTTTATATATGTCTTAAAGAACCAATTAAATTGAATACTTTA 300 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 ACTGTTACCACAGAAATGATTACTAAAACAATATCTTCAGATGAGAAACAAGATATGGAG 360 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 AAACGAATACCTATATCATATACTGTTTTGACAGACGACCCATCACTTAGTAAAAGAATG 420 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 CCTATACGTAAATTTACTTGTCAAGAACCAGAATTTATTCAGTCACCAGTTAAAGAAGTT 480 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 AATCTTAGTGATCCATGTTTCTCACCATTTATTGGACCCGTCCAACTTGCTCCAGGTGAT 540 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 CATGCAATTCCTTTTGCGTTTCCTCTTGAAAGTGATGCACATCCATCAATATTACTGAAG 600 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 GGTAAAGTTGGTTTTAAACATGAAGTGGAAATTATTCATAGATATTATGTCTATGCATCA 660 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 ATGAGATTGAGTCGACCAGATGAAAATAATTCAGTAACAATTAGTACAGACAATTTAAAT 720 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 ATCAAAGTTCTTAGTTGTGGTCCACCGAATTATACACTTTCAAATGGTGAACGAATACCA 780 consensus_9913#1 ------------------------------------------------------------ consensus_9913#0 GCTATCATGAAAACATTTACGATGGAAAATAGACAAATGTTAATACAGGTTGAAAATTTA 840 consensus_9913#1 -----------------------GNAGGCCAG--NAAT-TCGGCACGAGGTGAAAATTTA 34 * * ** *** * ** * ********** consensus_9913#0 ATCTTTCAAGAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATA 900 consensus_9913#1 ATCTTTCA-GAGGCTGATGATATTAATATTTATTTATTTACGGATGAACCAGCTGGCATA 93 ******** *************************************************** consensus_9913#0 CGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGAT 960 consensus_9913#1 CGTTATGTTGAAGCTTATTTACTTCGTATATTTCATATACCTGGATTAAAAGTTTCTGAT 153 ************************************************************ consensus_9913#0 ACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACA 1020 consensus_9913#1 ACGAAAGCATTACATAAATTGAAAAAGTATCCTCCCAATGTTTTTATTGATGGTCGTACA 213 ************************************************************ consensus_9913#0 GAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAA 1080 consensus_9913#1 GAAAAAGTTACTTTTACTGAAAATCTACCCTTACCATACTCTGAAGCAGCTGAAACTGAA 273 ************************************************************ consensus_9913#0 AGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTA 1140 consensus_9913#1 AGTGGACGATTATTTTCCAATTCACAATATTTACCAAGTCATTATCGTGATTTTCGTGTA 333 ************************************************************ consensus_9913#0 TCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTAT 1200 consensus_9913#1 TCATGTGAATCTTTAAACTCAACAGAACAATCACAAAGAACATTACATTGTGATTCGTAT 393 ************************************************************ consensus_9913#0 AAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATC 1260 consensus_9913#1 AAGGACTTACCTAGAGATGCACGTAAAGCCGGTTGCCATTTAACTTTAAACGTACCAATC 453 ************************************************************ consensus_9913#0 AATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTT 1320 consensus_9913#1 AATTCAGTTCCACAAAGCTGCTTAGAATCATTGAAGATAACTTATTATATTAGGGTTCTT 513 ************************************************************ consensus_9913#0 ATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGT 1380 consensus_9913#1 ATACATGGTAAACGTAAAGTGATGGCTTATAGTTTACCAATATCAGTAGTTGAACAACGT 573 ************************************************************ consensus_9913#0 TCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATAC 1440 consensus_9913#1 TCTAAAGATTACAAAATGCGTTATTTGGGTGAAGGTAATCATATATACGATCCGGAATAC 633 ************************************************************ consensus_9913#0 TTAANATTAAAACGTGACAGTAAATGTTCAGTTTCATAACA------------------- 1481 consensus_9913#1 TTAAAATTAAAACGTGACAGTAAATGTTCAGTTTCATAACATTTGGATACAAACAAATCT 693 **** ************************************ consensus_9913#0 ------------------------------------------------------------ consensus_9913#1 ACTAATGTAATACGATTCAATTTTTAAAAAAATATTAGTAAATTTATCAACTATTAGTTA 753 consensus_9913#0 ------------------------------------------------------------ consensus_9913#1 CAACTTTTACACCCTTTTTTTCTAGGAGGAAAACTGAGAGAGAAAATCAATGTTAGATTC 813 consensus_9913#0 ------------------------------------------------------------ consensus_9913#1 TTTTTTCCTCTTTTCTTTNACTTTTATTGTCTTGAATTGGTGTTTGTCATCTACGGTATT 873 consensus_9913#0 ------------------------------------------------------------ consensus_9913#1 GTTACATTGTTCATTTTGTTTTATTATGACTTTTTGATTTGGTTAGTTGGTTTGATTTTT 933 consensus_9913#0 ------------------------------------------------------------ consensus_9913#1 TTTGTTTCATCTACTTAGTTAACTAAGTTTTTTTTTGCTATTAATAATAATCATTCGTGT 993 consensus_9913#0 ------------------------------------------------------------ consensus_9913#1 ATTCTTTATCATTATTTTATCGAATTCCTGATAAAAATATGTTATAAAAAGAGTGAATAA 1053 consensus_9913#0 ------------------ consensus_9913#1 TTTCATCATTAAAGTTAA 1071 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||