These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1030 fasta sequence [TGGCACGTTATCAATTTGGATCGTTGTAAAGATCCTTCGGTATACTTTTTAAAAAGTACTTCGGATGATAAAAAGGATAAAACGAAAATTAAGAAAATTGCAAAAGATCGATCAACTAAAAAACAATTAAGAGCTTCATCTGATATAGAGGATGGAACATGGACTACAATTGATTCTTACGGACGACCGGAAATTCAAGT-TCAA-GCCTTC-GAAAAAGGACAAGAAATTAATTTTGACGTCGTAGTTAAGAAAATGACAGAAATTTTGGCAAGTCGTGGTAAAAAAGGTGCAAGTACCAGTGATCAAATTGTGTTACTTATGCAAGTTGAAGAAAAAATTAAGGAGTGTGATCTATCTCGTGGGTTACACGTTAAAGTTCTATTCGCTTTTATCAGCGTACTGTTCGATTATGACAAAAAGCATGATTGTATGAACTCCAACTTATTCGACCGAACTCTTAATGCATTCGATCGTGTATTTGATCTGTTAAATGAAATAAATATTCAACTGATTGCATTGGATTCTAATGATGATGAATCATTTGAGCATGAACCGTACCGTATCAAAGCATCTATTCTGACTGTGGTGGGTCTTTTAGATGTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGACTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGTCTATTTGGAAAAGAAAGAATATCCTCCAGATGCACTCTGTGCTGCCTATCTTCATAAACTGGAACACATGTACTATAAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGACCAGT] [+] EMBL CD115562 [TGGCACGTTATCAATTTGGATCGTTGTAAAGATCCTTCGGTATACTTTTTAAAAAGTACTTCGGATGATAAAAAGGATAAAACGAAAATTAAGAAAATTGCAAAAGATCGATCAACTAAAAAACAATTAAGAGCTTCATCTGATATAGAGGATGGAACATGGACTACAATTGATTCTTACGGACGACCGGAAATTCAAGTGTCAACGCCTTCAGAAAAAGGACAAGAAATTAATTTTGACGTCGTAGTTAAGAAAATGACAGAAATTTTGGCAAGTCGTGGTAAAAAAGGTGCAAGTACCAGTGATCAAATTGTGTTACTAATGCAAGTTGAAGAAAAAATTAAGGAGTGTGATCTATCTCGTGGGTTACACGTTAAAGTTCTATTCGCTTTTATCAGCGTACTGTTCGATTATGACAAAAAGCATGATTGTATGAACTCCAACTTATTCGACCGAACTCTTAATGCATTCGATCGTGTATTTGATCTGTTAAATGAAATAAATATTCAACTGATTGCATTGGATTCTAATGATGATGAATCATTTGAGCATGAACCGTACCGTATCAAAGCATCTATTCTG ] [+] EMBL CD067394 [ GTTGTAAAGATCCTTCGGTATACTTTCTAAAAAGTACTTCGGATGATAAAAAGGATAAAACGAAAATTAAGAAAATTGCAAAAGATCGATCAACTAAAAAACAATTAAGAGCTTCATCTGATATAGAGGATGGAACATGGACTACAATTGATTCTTACGGACGACCGGAAATTCAAGT TCAA GCCTTC GAAAAAGGACAAGAAATTAATTTTGACGTCGTAGTTAAGAAAATGACAGAAATTTTGGCAAGTCGTGGTAAAAAAGGTGCAAGTACCAGTGATCAAATTGTGTTACTTATGCAAGTTGAAGAAAAAATTAAGGAGTGTGATCTATCTCGTGGGTTACACGTTAAAGTTCTATTCGCTTTTATCAGCGTAC ] [+] EMBL CD131585 [ TACTTTTTAAAAAGTACTTCGGATGATAAAAAGGATAAAACGAAAATTAAGAAAATTGCAAAAGATCGATCAACTAAAAAACGATTAAGAGCTTCATCTGATATAGAGGATGGAACATGGACTACAATTGATTCTTACGGACGACCGGAAATTCAAGT TCAA GCCTTC GAAAAAGGACAAGAAATTAATTTTGACGTCGTAGTTAAGAAAATGACAGAAATTTTGGC ] [-] EMBL CD113686 [ CAAGAAATTAA TTTGACGTCGTAGTTAAGAAAATGACAGAAATTTTGGCAAGTCGTGGTAAAAAAGGTGCAAGTACCAGTGATCAAATTGTGTTACTTATGCAAGTTGAAGAAACAATTAAGGAGTGTGATCTATCTCGTGGGTTACACGTTAAAGTTCTATTCGCTTTTATCAGCGTACTGTTCGATTATGACAAAAAGCATGATTGTATGAACTCCAACTTATTCGACCGAACTCTTAATGCATTCGATCGTTTATTTGATCTGTTAAATGAAATAAATATTCAACTGATTGCATTGGATTCTAATGATGATGAATCATTTGAGCATGAACCGTACCGTATCAAAGCATCTATTCTGACTGTGGTGGGTCTTTTAGATGTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGACTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGTCTATTTGGAAAAGAAAGAATATCCTCC ] [-] EMBL CD115518 [ ATTGCATTGGATTCTAATGATGATGAATCATTTGAGCAAGACCGGTACCGTATCAGAGCATCTATTCTGACTGTGGTGGGTCTTTTAGATGTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGACTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGTCTATTTGGAAAAGAAAGAATATCCTCCAGATGCACTCTGTGCTGCCTATCTTCATAAACTGGAACACATGTAGTATAAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTGACACTTTAGTTATTCAAAAGCTTTGCGAATATATTTATTTAAATGATC ] [-] EMBL CD067101 [ TCTAATGATGATGAATCATTTGAGCATGAACCGTACCGTATCAAAGCATCTATTCTGACTGTGGTGGGTCTTTTAGATGTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGACTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGTCTATTTGGAAAAGAAAGAATATCCTCCAGATGCACTCTGTGCTGCCTATCTTCATAAACTGGAACACATGTACTATAAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGACCAGT] [+] EMBL CD197638 [ AACCGTACCGTATCAAAGCATCTATTCTGACTGTGGTGGGTCTTTTAGATGTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGACTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGTCTATTTGGAAAAGAAAGAATATCCTCCAGATGCACTCTGTGCTGCCTATCTTCATAAACTGGAACACATGTACTATAAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCCATTGAACATGCTGA ] [-] EMBL CD197560 [ AGCATCTATTCTGACTGTGGTGGGTCTTTTAGATGTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGACTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGACTATTTGGAAAAGAAAGAATATCCTCCAGATGCACTCTGTGCTGCCTATCTTCATAAACTGGAACACATGTACTATAAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGAC ] [-] EMBL CD067336 [ AAGTTGGATTTTGAATGGGGTCGCAAAGTGGAAGCTTCCAGTATGCAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAGCTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTATATGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTTATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGACCAGT] consensusID : consensus_9946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [CTGTAGTCTAATTGTCTAGTGCATCAAGGTCGTAGTTGCCCGCATTGTGTATCGATCGAGTAACTAGTTTACTATCTAGTCTAGTGTTATTGTATTACCGTATTACACAACAGATTTTCAGGCGAAATAATCTTTAGTAACAAATTTCTAGTATCAATACTTTTTAACAGTCGAAGTAGAAGGTTTCTAACGAATTTGGATTTGACCCTATATCATTCACTTATTTTGCTGTGAGCAGCTGGATGGTGACAAATCATGAACTTTCACAAAATGAGCGGATGACAGGGCTGAATAAATTAGCTTGTATTAAATAATTAATTTACAGTTGTATTATAAATCCACAAAAACTATTCAAACAGCGTTTTTGTCTTATTGTTCTAACAAAAAAAGATTGAAACCATACCGGTCGAATAAGTTGGAGTTCATACAATCATGCTTTTTGTCATAATCGAACAGTACGCTGATAAAAGCGAATA] [+] EMBL CD184768 [CTGTAGTCTAATTGTCTAGTGCATCAAGGTCGTAGTTGCCCGCATTGTGTATCGATCGAGTAACTAGTTTACTATCTAGTCTAGTGTTATTGTATTACCGTATTACACAACAGATTTTCAGGCGAAATAATCTTTAGTAACAAATTTCTAGTATCAATACTTTTTAACAGTCGAAGTAGAAGGTTTCTAACGAATTTGGATTTGACCCTATATCATTCACTTATTTTGCTGTGAGCAGCTGGATGGTGACAAATCATGAACTTTCACAAAATGAGCGGATGACAGGGCTGAATAAATTAGCTTGTATTAAATAATTAATTTACAGTTGTATTATAAATCCACAAAAACTATTCAAACAGCGTTTTTGTCTTATTGTTCTAACAAAAAAAGATTGAAACCATACCGGTCGAATAAGTTGGAGTTCATACAATCATGCTTTTTGTCATAATCGAACAGTACGCTGATAAAAGCGAATA] consensusID : consensus_9946#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 345 fasta sequence [TTTTTCTGCCTCGGTAGTTAATATTGCATGCTGTTTTGCTGTTATTATTGTTACAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGACCAGTCAACTATGATCCTGTATAACCGTGCCATGGTTCAGTTAGGCTTAT] [+] EMBL CD163797 [TTTTTCTGCCTCGGTAGTTAATATTGCATGCTGTTTTGCTGTTATTATTGTTACAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGACCAGTCAACTATGATCCTGTATAACCGTGCCATGGTTCAGTTAGGCTTA ] [-] EMBL CD164015 [ TCGGTAG TAATATTGCATGCTG TTTGCTGTTA TATTGTTACAGTTTGA TTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAAGAAGTTGGACTTCATCCTAACACTTTAGTTATTCAAAAACTTTGCGAATATATTTATTTAAATGATCGAACAGATAGACTACGTACCAGAGCTATTCTCTGTCATATTTATCATTTGGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTTGCAAATGTCAATTGAACATGCTGACCAGTCAACTATGATCCTGTATAACCGTGCCATGGTTCAGTTAGGCTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9946#0 TGGCACGTTATCAATTTGGATCGTTGTAAAGATCCTTCGGTATACTTTTTAAAAAGTACT 60 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 TCGGATGATAAAAAGGATAAAACGAAAATTAAGAAAATTGCAAAAGATCGATCAACTAAA 120 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 AAACAATTAAGAGCTTCATCTGATATAGAGGATGGAACATGGACTACAATTGATTCTTAC 180 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 GGACGACCGGAAATTCAAGTTCAAGCCTTCGAAAAAGGACAAGAAATTAATTTTGACGTC 240 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 GTAGTTAAGAAAATGACAGAAATTTTGGCAAGTCGTGGTAAAAAAGGTGCAAGTACCAGT 300 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 GATCAAATTGTGTTACTTATGCAAGTTGAAGAAAAAATTAAGGAGTGTGATCTATCTCGT 360 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 GGGTTACACGTTAAAGTTCTATTCGCTTTTATCAGCGTACTGTTCGATTATGACAAAAAG 420 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 CATGATTGTATGAACTCCAACTTATTCGACCGAACTCTTAATGCATTCGATCGTGTATTT 480 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 GATCTGTTAAATGAAATAAATATTCAACTGATTGCATTGGATTCTAATGATGATGAATCA 540 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 TTTGAGCATGAACCGTACCGTATCAAAGCATCTATTCTGACTGTGGTGGGTCTTTTAGAT 600 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ------------------------------------------------------------ consensus_9946#0 GTTGAATGTTTCAAAGTTCTGCAAAATGCCAACGGCCATGAGTCGGAATATGTTGACAGA 660 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 ---------------------------------------CTGTAGTCTAATTGTCTAGTG 21 consensus_9946#0 CTTCGAGATGAACGAAGAGTCTGTAATATTATTGATCGTTTATGTGTCTATTTGGAAAAG 720 consensus_9946#2 ------------------------------------------------------------ consensus_9946#1 CATCAAGGTCGTAGTTGCCCGCATTGTGTATCGATCGAGTAACTAGTTTACTATCTAGTC 81 consensus_9946#0 AAAGAATATCCTCCAGATGCACTCTGTGCTGCCTATCTTCATAAACTGGAACACATGTAC 780 consensus_9946#2 -----TTTTTCTGCCTCGGTAGTTAATATTGCATGCTGTTTTG--CTGTTATTATTGT-- 51 consensus_9946#1 TAGTGTTATTGTATTACCGTATT--ACACAACAGATTTTCAGGCGAAATAATCTTTAGTA 139 * * * * * * * * * * consensus_9946#0 TATAAGTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAA-GAAGTTGG 839 consensus_9946#2 TACA-GTTTGATTTTGAATGGGGTCGTAAAGTGGAAGCTTCCAGTATGGAA-GAAGTTGG 109 consensus_9946#1 ACAAATTTCTAGTATCAATACTTTTTAACAGTCGAAGTAGAAGGTTTCTAACGAATTTGG 199 * ** * * * *** * * *** **** ** * ** *** **** consensus_9946#0 ACTTCATCCTA-ACACTTTAGTTATTC-------AAAAACTTTGCGAATATATTTATTTA 891 consensus_9946#2 ACTTCATCCTA-ACACTTTAGTTATTC-------AAAAACTTTGCGAATATATTTATTTA 161 consensus_9946#1 ATTTGACCCTATATCATTCACTTATTTTGCTGTGAGCAGCTGGATGGTGACAAATCATGA 259 * ** * **** * ** * ***** * * ** * * * * * * consensus_9946#0 AATG--ATCGAACAGATAGACTACGTACCAGAGC----TATTCTCTGTCATATTTATCAT 945 consensus_9946#2 AATG--ATCGAACAGATAGACTACGTACCAGAGC----TATTCTCTGTCATATTTATCAT 215 consensus_9946#1 ACTTTCACAAAATGAGCGGATGACAGGGCTGAATAAATTAGCTTGTATTAAATAATTAAT 319 * * * ** ** ** * ** ** * * * * ** * ** consensus_9946#0 TTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTT---- 1001 consensus_9946#2 TTAGCTCTTTATAATCAATGGTTCAAAGCTCGTGACTTGATGCTTATGTCTGATTT---- 271 consensus_9946#1 TTACAGTTGTATTATAAATCCACAAAAACTATTCAAACAGCGTTTTTGTCTTATTGTTCT 379 *** * *** ** *** *** ** * * * ** ***** *** consensus_9946#0 -GCAAATGTCAATTGAA--CATGCTGACCAGT---------------------------- 1030 consensus_9946#2 -GCAAATGTCAATTGAA--CATGCTGACCAGTCAACTATGATCCTGTATAACCGTGCCAT 328 consensus_9946#1 AACAAAAAAAGATTGAAACCATACCGGTCGAATAAGTTGGAGTTCATACAATCATGCTTT 439 **** ****** *** * * * consensus_9946#0 ------------------------------------- consensus_9946#2 GGTTCAGTTAGGCTTAT-------------------- 345 consensus_9946#1 TTGTCATAATCGAACAGTACGCTGATAAAAGCGAATA 476 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||