These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 813 fasta sequence [GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACT-GTCATC-TGG-AAACGCGTATTCCTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC-TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGNNTAANGGAGATTTAT-AGTG-ATATATAGACAGTTTTGGT--AAATACGAT-AACTAGTCGAA--TTTTATCTGTAC-AAAGC-CCTCTTA-CATACAAAAGT] [+] EMBL CD081423 [GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACT GTCATC TGG AAACGCGTATTCCTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGNNTAANGGAGATTTAT AGTG ATATATAGACAGTTTTGGT AAATACGAT AACTAGTCGAA TTTTATCTGTAC AAAGC CCTCTTA CATACAAA ] [+] EMBL CD062371 [ ACTGGTCAGCTTGGAAAACGCGTATTCGTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAAATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTG ] [+] EMBL AA791334 [ CTGTAGATGATGCTTTCGCACAATTAGGA TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCATCGTTTATACAAAGGCTTACCATCTGTTGTACATAGTATTAACTTTCACTACACAAATTTATAT ] [-] EMBL CD075249 [ AGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGT] consensusID : consensus_9949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 452 fasta sequence [TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI067998 [TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTATTATGTTCTAAATATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCTTCGTTTGTACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTGTCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI068247 [ ACAGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI068022 [ TGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI067894 [ GCAACATATGTTCTGTTGTATTTCATAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTTGAATGGTTCGTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCAATACACAAATTTATATATGCGTCACCGTGAAGGTGATCCTCCGAAAATTTCTCAGCCAAATGAAATCAAAGGTGTTTGGACTCCGACTGCAACATGGCCGCCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACGTCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI067351 [ AGAGTCAGCACATGTTTCACGAGGTCGAATGTTTCATCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATGTACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI068100 [ CGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI068089 [ TTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] [-] EMBL AI068111 [ GTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9949#0 GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACTGTCATCTGGAAACGCGTATTCCT 60 consensus_9949#1 ------------------------------------------------------------ consensus_9949#0 CAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATA 120 consensus_9949#1 ------------------------------------------------------------ consensus_9949#0 ATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATA 180 consensus_9949#1 ------------------------------------------------------------ consensus_9949#0 ACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACA 240 consensus_9949#1 ------------------------------------------------------------ consensus_9949#0 TACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGT 300 consensus_9949#1 ------------------------------------------------------------ consensus_9949#0 GGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGAT 360 consensus_9949#1 ------------------------------------------------------------ consensus_9949#0 TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAG 420 consensus_9949#1 ------------------------TCTTTG--GTGATAGTAATAATAAAT-TTGTCCCAC 33 ** *** * * * ** * * * *** * * consensus_9949#0 CAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGAT----AGAGTCAGCACAT 476 consensus_9949#1 AGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACAT 93 ** * * * * * * * ** **** * ************* consensus_9949#0 GTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATG 536 consensus_9949#1 GTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATG 153 ************************************************************ consensus_9949#0 ATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATT 596 consensus_9949#1 ATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATT 213 ************************************************************ consensus_9949#0 TATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGC 656 consensus_9949#1 TATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGC 273 **************************************** ****************** consensus_9949#0 AGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGA 716 consensus_9949#1 AGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGA 333 ******* **************************************************** consensus_9949#0 CGGNNTAANGGAGATTTATA-GTGA-TATATAGACAGTTTTGGTAAA--TACGATAA-CT 771 consensus_9949#1 CGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACT 393 *** ** *********** **** *************** ***** ******** ** consensus_9949#0 AGTCGAA--TTTTATCTGTACAAAGCC--CTCTTAC-ATACAAAAGT------------ 813 consensus_9949#1 AGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT 452 ******* *************** * ******* ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||