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Schistosoma mansoni
cluster # 9949 cluster # 9949       Sequences # 12       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9949#0 length = 813 sequences # 4  
consensus_9949#1 length = 452 sequences # 8  

consensusID : consensus_9949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 813
fasta sequence
                              [GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACT-GTCATC-TGG-AAACGCGTATTCCTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC-TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGNNTAANGGAGATTTAT-AGTG-ATATATAGACAGTTTTGGT--AAATACGAT-AACTAGTCGAA--TTTTATCTGTAC-AAAGC-CCTCTTA-CATACAAAAGT]

[+] EMBL CD081423             [GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACT GTCATC TGG AAACGCGTATTCCTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGNNTAANGGAGATTTAT AGTG ATATATAGACAGTTTTGGT  AAATACGAT AACTAGTCGAA  TTTTATCTGTAC AAAGC CCTCTTA CATACAAA   ]
[+] EMBL CD062371             [                                  ACTGGTCAGCTTGGAAAACGCGTATTCGTCAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATAATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATAACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACATACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGTGGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAAATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTG                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AA791334             [                                                                                                                                                                                                                                                                                                                                             CTGTAGATGATGCTTTCGCACAATTAGGA TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCATCGTTTATACAAAGGCTTACCATCTGTTGTACATAGTATTAACTTTCACTACACAAATTTATAT                                                                                                                                                                                                                                                                    ]
[-] EMBL CD075249             [                                                                                                                                                                                                                                                                                                                                                 AGATGATGCTTTCGCACAATTAGGATTTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAGCAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCC TCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGT]


>consensus_9949#0 GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACTGTCATCTGGAAACGCGTATTCCT CAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATA ATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATA ACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACA TACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGT GGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGAT TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAG CAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGATAGAGTCAGCACATGTTT CACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTA ACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATC ATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGCAGAC CTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGN NTAANGGAGATTTATAGTGATATATAGACAGTTTTGGTAAATACGATAACTAGTCGAATT TTATCTGTACAAAGCCCTCTTACATACAAAAGT



consensusID : consensus_9949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 452
fasta sequence
                              [TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]

[-] EMBL AI067998             [TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTATTATGTTCTAAATATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCTTCGTTTGTACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTGTCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068247             [                               ACAGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068022             [                                     TGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI067894             [                                      GCAACATATGTTCTGTTGTATTTCATAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTTGAATGGTTCGTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCAATACACAAATTTATATATGCGTCACCGTGAAGGTGATCCTCCGAAAATTTCTCAGCCAAATGAAATCAAAGGTGTTTGGACTCCGACTGCAACATGGCCGCCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACGTCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI067351             [                                                                                AGAGTCAGCACATGTTTCACGAGGTCGAATGTTTCATCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATGTACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068100             [                                                                                                   CGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068089             [                                                                                                                       TTTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]
[-] EMBL AI068111             [                                                                                                                                                GTACATATGATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT]


>consensus_9949#1 TCTTTGGTGATAGTAATAATAAATTTGTCCCACAGATTGCAACATATGTTCTGTTTTATT TTCTAACTATTTTTACCTTAAGAGTCAGCACATGTTTCACGAGGTCGAATGGTTCCTCGT TTATACAAAGGCTTACGATCTGTTGTACATATGATTAACTTTCACTACACAAATTTATAT ATACGTCTCCGAGAAGGTGATCCTCCGAAAATTTATCATCCAAATGAAATCAAAGGTGTT TGGACTCCGGCTGCAACATGTCCACCAGAAGGCAGACCTTGGGGCTCAACACGAGAAATG GTACATCGTGAATTGGAAAGATTGCGTGGAAGACGGTTAAAAGGAGATTTATAAGTGAAT ATATAGACAGTTTTTGTAAAAATACGATAAACTAGTCGAAATTTTTATCTGTACAAAAGC ACCTCTTACCATACAAAAGTATCAAATCTTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9949#0      GCCGAGGACTTGTTTCTAAAACTCTATGGAAAGTACTGTCATCTGGAAACGCGTATTCCT 60
consensus_9949#1      ------------------------------------------------------------
                                                                                  

consensus_9949#0      CAAAATATTTCATATCTACTTCTATCGGTTTACATAAAAAACCTGAATTGTCAAATCATA 120
consensus_9949#1      ------------------------------------------------------------
                                                                                  

consensus_9949#0      ATGGAGCTACAATAATATCTAAAGTTACTGGTCAAAAAGAAGATCTTTGGCAGTTGTATA 180
consensus_9949#1      ------------------------------------------------------------
                                                                                  

consensus_9949#0      ACGAGGTGGTTTATCCGCCTGTACCTAAAGTTTCAAGCTCAGTTCTCTGGGATACTAACA 240
consensus_9949#1      ------------------------------------------------------------
                                                                                  

consensus_9949#0      TACGACCAGGTGAAGTTACCCATCGTCGAGATGATATTTTATACAGTAGCAAAAGACTGT 300
consensus_9949#1      ------------------------------------------------------------
                                                                                  

consensus_9949#0      GGATGCTAGTCCACTTGATTCGTGGGCGATCTGTAGATGATGCTTTCGCACAATTAGGAT 360
consensus_9949#1      ------------------------------------------------------------
                                                                                  

consensus_9949#0      TTCGTACTGAAAAGGGAGCTAGAATCCTTGAAGAGGTGCTAGAAGAAGCTATTGAGCTAG 420
consensus_9949#1      ------------------------TCTTTG--GTGATAGTAATAATAAAT-TTGTCCCAC 33
                                              ** ***  * * *  **  *  *  * ***  * * 

consensus_9949#0      CAGTTAAGGAGCACGATTTTGAATTCTGTACAAAAATTTGGAT----AGAGTCAGCACAT 476
consensus_9949#1      AGATTGCAACATATGTTCTGTTTTATTTTCTAACTATTTTTACCTTAAGAGTCAGCACAT 93
                         **       * * * *    *  * *  **  ****  *     *************

consensus_9949#0      GTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATG 536
consensus_9949#1      GTTTCACGAGGTCGAATGGTTCCTCGTTTATACAAAGGCTTACGATCTGTTGTACATATG 153
                      ************************************************************

consensus_9949#0      ATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATT 596
consensus_9949#1      ATTAACTTTCACTACACAAATTTATATATACGTCTCCGAGAAGGTGATCCTCCGAAAATT 213
                      ************************************************************

consensus_9949#0      TATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGNCACATGTCCACCAGAAGGC 656
consensus_9949#1      TATCATCCAAATGAAATCAAAGGTGTTTGGACTCCGGCTGCAACATGTCCACCAGAAGGC 273
                      ****************************************  ******************

consensus_9949#0      AGACCTTNGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGA 716
consensus_9949#1      AGACCTTGGGGCTCAACACGAGAAATGGTACATCGTGAATTGGAAAGATTGCGTGGAAGA 333
                      ******* ****************************************************

consensus_9949#0      CGGNNTAANGGAGATTTATA-GTGA-TATATAGACAGTTTTGGTAAA--TACGATAA-CT 771
consensus_9949#1      CGGTTAAAAGGAGATTTATAAGTGAATATATAGACAGTTTTTGTAAAAATACGATAAACT 393
                      ***   ** *********** **** *************** *****  ******** **

consensus_9949#0      AGTCGAA--TTTTATCTGTACAAAGCC--CTCTTAC-ATACAAAAGT------------ 813
consensus_9949#1      AGTCGAAATTTTTATCTGTACAAAAGCACCTCTTACCATACAAAAGTATCAAATCTTTT 452
                      *******  ***************  *  ******* **********            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)