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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1228 fasta sequence
[NNNNNANANNNNNNTTCCCCTCTCCTACACCTACAACAAAACATTGATATACCTGAGATAACCTTGTCAGTTCATCCTTTAGTCGCACAGGTGATCAAGCAGCGCGCAGAAGAGGGGAAACGAGCAAAGACGTCAGATTTCGAAGACAAGCTTGATGATGCACAGTTTCTGAATGCCCTTCAATCTGGAGTGAACAGATGGATCAAAGAAATTCAAAAGGTCACAAAGCTCGACCGTGATCCTTCATCTGGGACTGCATTACAAGAGATTACGTTTTGGCTTAATTTGGAACGCAGCTTATTTCGAATACAGGAAAAAAGAGAGTCCCTGGAGGTTACGTTAACTTTGGACATTCTGAAACACGCTAAAAGATTTCATGCCTTAGTTAGTTTCGATACCGACACAGGGTAGCAAAGGGTACCGGGGACTGTCAATGACTACAACCCTTTGATGAAGGATTTCCCTCTGAATGATCTTTTGTCAGCTACTGAACTAGATAAAATCCGTCTAGCTGTACAATCAATCTTTACTCATTTACGCAAAATTCGTAATACGAAATATCCTTTACAAAGGGCTTTACGTCTAATCGAAGCTATTTCCAGAGATCTCACTTCACAACTGTTGAAGGTTTTAGGTACACGCCGTCTCATGCATATGCCTTTTGAAGAGTTTGAAAGAGTAATGGCTGCTTGTTTTGAAGTCTTTTCAACATGGGACGATGAGTACGACCGACTTCAAAGCTTAATGCGGGATATAATTAAGAAAAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGACCTGCACGTAGTGCTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCG-AATGACCTGTCAACTATCAATGGAGTGGTTGTAAGTGAGAGTGGTGGCAAGATTCTTCCAAAAGCCGTTGGGAAAGAACAACCACTTCTAGATGCATCAGATGCT-AATGCAATAGAAGAGGTAAACTTAGCTTATGAGATAGTGAAGGAGATCGATTGTTTGG-ACGTTACTAAAGAAGGTAGTGAAGTGTGGGAAGCGGCAGTTAAACGGTATGATGAACGGATTGATCGTGTGGAAACTCGAATAGCTGCACGTCTTCGAGATCTCCTAAGAACTG]
[-] EMBL CD068798 [NNNNNANANNNNNNTTCCCCTCTCCTACACCTACAACAAAACATTGATATACCTGAGATAACCTTGTCAGTTCATCCTTTAGTCGCACAGGTGATCAAGCAGCGCGCAGAAGAGGGGAAACGAGCAAAGACGTCAGATTTCGAAGACAAGCTTGATGATGCACAGTTTCTGAATGCCCTTCAATCTGGAGTGAACAGATGGATCAAAGAAATTCAAAAGGTCACAAAGCTCGACCGTGATCCTTCATCTGGGACTGCATTACAAGAGATTACGTTTTGGCTTAATTTGGAACGCAGCTTATTTCGAATACAGGAAAAAAGAGAGTCCCTGGAGGTTACGTTAACTTTGGACATTCTGAAACACGCTAAAAGATTTCATGCCTTAGTTAGTTTCGATACCGACACAGGGTAGCAAAGGGTACCG ]
[+] EMBL CD062535 [ gGGTAATCACCCGGCGCGCAGAAGAGGGGAAACGAGCAAAGACGTCAGATTTCGAAGACAAGCTTGATGATGCACAGTTTCTGAATGCCCTTCAATCTGGAGTGAACAGATGGATCAAAGAAATTCAAAAGGTCACAAAGCTCGACCGTGATCCTTCATCTGGGACTGCATTACAAGAGATTACGTTTAGGCTTAATTTGGAACGCAGCTTATTTCGAATACAGGAAAAAAGAGAGTCCCTGGAGGTTACGTTAACTTTGGACATTCTGAAACACGCTAAAAGATTTCATGCCTTAGT ]
[+] EMBL CD154537 [ CGCTAAAAGATTTCATGCCTTAGTTAGTTTCGATACCGACACAGGGTTGCAAAGAGCTTTAGGGACTGTCAATGACTACAACCCTTTGATGAAGGATTTCCCTCTGAATGATCTTTTGTCAGCTACTGAACTAGATAAAATCCGTCTAGCTGTACAATCAATCTTTACTCATTTACGCAAAATTCGTAATACGAAATATCCTTTACAAAGGGCTTTACGTCTAATCGAAGCTATTTCCAGAGATCTCACTTCACAACTGTTGAAGGTTTTAGGTACACGCCGTCTCATGCATATGCCTTTTGAAGAGTTTGAAAGAGTAATGGCTGCTTGTTTTGAAGTCTTTTCAACATGGGACGATGAGTACGACCGACTTCAAAGCTTAATGCGGGATATAATTAAGAAAAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATAAAATGAGAAAGTTCCGACATCAACATGAACAGTTAACGCAGGTA ]
[+] EMBL CD113325 [ CACTTCACAACTGTTGAAGGTTTTAGGTACACGCCGTCTCATGCATATGCCTTTTGAAGAGTTTGAAAGAGTAATGGCTGCTTGTTTTGAAGTCTTTTCAACATGGGACGATGAGTACGAC ]
[+] EMBL CD183169 [ ATGGCTGCTTGTTTTGAAGTCTTTTCAACATGGGACGATGAGTACGACCGACTTCAAAGCTTAATGCGGGATATAATTAAGAAAAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGACCTGCACGTAGTGCTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCGAAATGACCTGTC ACTATCA ]
[+] EMBL CD182219 [ GACGATGAGTACGACCGACTTCAAAGCTTAATGCGGGATATAATTAAGAAAAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGA ]
[+] EMBL CD111872 [ TTAAGAAAAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGACCTGCACGTAGTGCTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCG AATGACCTGTCAACTATCAATGGAGTGGTTGTAAGTGAGAGTGGTGGCAAGATTCTTCCGAAAGCCGTTGGGAAAGAACAACCACTTCTAGATGCATCAGATGCTAAATGC ATAGAAGAGGTAAACTTAGCTTATGAGATAGTGAAGGAGATCGATTGTTNGGNACG TACTANAGAAGGTAGT ]
[+] EMBL CD191504 [ AAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGACCTGCACGTAGTGCTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCG AATGACCTGTCAGCTATCAATGGAGTGGTTGTAAGTGAGAGTGGTGGCAAGATTCTTCCAAAAGCCGTTGGGAAAGAACAACCACTTCTAGATGCATCAGATGCT AATGCAATAGAAGAGGTTAACTTAGCTCATGAGATAGTGAAGGAGATCGATTGTTTGG ACGTTACTAAAGAAGGTAGTGAAGTGTGGGAAGCGGCAGTTAAACGGTATGATGAACGGATTGATCGTGTGGAAACTCGAATAGCTGCACGTCTTCGAGATCTCCTAAGAACTG]
[+] EMBL CD191505 [ AAAGCGGGATGAACAACTACGGATGATATGGCGAAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGACCTGCACGTAGTGCTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCG AATGACCTGTCAACTATCAATGGAGTGGTTGTAAGTGAGAGTGGTGGCAAGATTCTTCCAAAAGCCGTTGGGAAAGAACAACCACTTCTAGATGCATCAGATGCT AATGCAATAGAAGAGGTAAACTTAGCTTATGAGATAGTGAAGGAGATCGATTGTTTGG ACGTTACTAAAGAAGGTAGTGAAGTGTGGGAAGCGGCAGTTAAACGGTATGATGAACGGATTGATCGTGTGGAAACTCGAATAGCTGCACGTCTT ]
[+] EMBL CD158573 [ AAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCTGGATCAAATGAGAAAGTTCCGACATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCGTTTTAAGACCTGCACGTAGTGCTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCG AATGACCTGTCAACTATCAATGGAGTGGTTGTAAGTGAGAGTGGTGGCAAGA ]
consensusID : consensus_9960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence
[CACCTGTGCGACTAAAGGATGAACTGACAAGGTTATCTCAGGTATATCAATGTTTTGTTGTAGGTGTAGGAGACCCATCTCCAAATCCGTCATCGTTTTTTCCACGCTTGGTGCCATTTTGTCCCCATCCCTATCAGCTCTCCCAGATTCCCGGATGTAGACTTGTAGAAGGGACTTATCGCATTGCTGATAGTTGAATGCAACGTTTCATATGGAGAGCCATCCGAAAAGTTCAAAAATCTCAACTGAGAACTGAAGCTCTTATCGGCCTCTAAAACCCCTCCCCGTTTGATGAATACGATACTTTGGACTCTGTTATTTGTAAATCTAACTTCAGGAAGGATGGTGTAAGAAACACAGGAATCTGTTGACTCATCATCATCGTCTCTGGTGGAAAGTTTCTGAACAACAAGTGAATGAACTTGAGCATCAGATATGAACTTTTTGATTAGCTCTTGGCAACTCGGGTCATTTAAAGTTGACTCTAACACTAACGAACCGTCGTTGGTCTCTTCCAAGAGAGTGCATACGATTTTATGCACATATTTGCTGAAAACTATGATATCAGCTAGTAAAACAGTTGGCGGTAATGGATNTAGC-ACGGGATCAACCGACGTATCTGCCATAAATGCAAACGACAGTTTACGTTGGGTAGCTATTTTGTGAATAACGCG]
[+] EMBL CD113460 [CACCTGTGCGACTAAAGGATGAACTGACAAGGTTATCTCAGGTATATCAATGTTTTGTTGTAGGTGTAGGAGACCCATCTCCAAATCCGTCATCGTTTTTTCCACGCTTGGTGCCATTTTGTCCCCATCCCTATCAGCTCTCCCAGATTCCCGGATGTAGACTTGTAGAAGGGACTTATCGCATTGCTGATAGTTGAATGCAACGTTTCATATGGAGAGCCATCCGAAAAGTTCAAAAATCTCAACTGAGAACTGAAGCTCTTATCGGCCTCTAAAACCCCTCCCCGTTTGATGAATACGATACTTTGGACTCTGTTATTTGTAAATCTAACTTCAGGAAGGATGGTGTAAGAAACACAGGAATCTGTTGACTCATCATCATCGTCTCTGGTGGAAAGTTTCTGAACAACAAGTGAATGAACTTGAGCATCAGATATGAACTTTTTGATTAGCTCTTGGCAACTCGGGTCATTTAAAGTTGACTCTAACACTAACGAACCGTCGTTGGTCTCTTCCAAGAGAGTGCATACGATTTTATGCACATATTTGCTGAAAACTATGATATCAGCTAGTAAAACAGTTGGCGGTAATGGATNTAGC ACGGGATCAACCGACGTATCTGCCATAAATGCAAACGACAGTTTACGTTGGGTAGCTATTTTGTGAATAACGCG]
[+] EMBL CD098036 [ TACGATACTTTGGACTCTGTTATTTGTAAATCTAACTTCAGGAAGGATGGTGTAAGAAACACAGGAATCTGTTGACTCATCATCATCGTCTCTGGTGGAAAGTTTCTGAACAACAAGTGAATGAACTTGAGCATCAGATATGAACTTTTTGATTAGCTCTTGGCAACTCGGGTCATTTAAAGTTGACTCTAACACTAACGAACCGTCGTTGGTCTCTTCCAAGAGAGTGCATACGATTTTATGCACATATTTGCTGAAAACTATGATATCAGCTAGTAAAACAGTTGGCGGTAATGGAT TAGCAACGGGATCAACCGACGTATCTGCCATAAATGCAAACGACAG TTACGTTGGGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9960#0 NNNNNANANNNNNNTTCCCCTCTCCTACACCTACAACAAAACATTGATATACCTGAGATA 60
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 ACCTTGTCAGTTCATCCTTTAGTCGCACAGGTGATCAAGCAGCGCGCAGAAGAGGGGAAA 120
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CGAGCAAAGACGTCAGATTTCGAAGACAAGCTTGATGATGCACAGTTTCTGAATGCCCTT 180
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CAATCTGGAGTGAACAGATGGATCAAAGAAATTCAAAAGGTCACAAAGCTCGACCGTGAT 240
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CCTTCATCTGGGACTGCATTACAAGAGATTACGTTTTGGCTTAATTTGGAACGCAGCTTA 300
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 TTTCGAATACAGGAAAAAAGAGAGTCCCTGGAGGTTACGTTAACTTTGGACATTCTGAAA 360
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CACGCTAAAAGATTTCATGCCTTAGTTAGTTTCGATACCGACACAGGGTAGCAAAGGGTA 420
consensus_9960#1 ------------------------------------------------------------
consensus_9960#0 CCGGGGACTGTCAATGACTACAACCCTTTGATGAAGGATTTCCCTCTGAATGATCTTTTG 480
consensus_9960#1 ----CACCTGT--GCGACTA-AAGGATGAACTGACAAGGTTATCTCAGGTATATCAATGT 53
**** ***** ** * *** ** *** * *** *
consensus_9960#0 TCAGCTACTGAACTAGATAAAATCCGTCTAGCTGTACAATCAATCTTTACTCATTTACGC 540
consensus_9960#1 TTTGTTGTAGGTGTAGGAGACCCATCTCCAAATCCGTCATCGTTTTTTCCACGCTTGGTG 113
* * * * *** * ** * * *** * *** * * **
consensus_9960#0 AAAATTCGTAATACGAAATATCCTTTACAAAGGGCTTTACGTCTAATCGAAGCTATTTCC 600
consensus_9960#1 CCATTTTGTCCC------CATCCCTATCA---GCTCTCCCAGATTCCCGGATGTAGACTT 164
* ** ** **** * ** * * * * ** * **
consensus_9960#0 AGAGATCTCACTTCACA-ACTGTTGAAGGTTTTAGGTACACGCCGTCTCATGCATAT-GC 658
consensus_9960#1 GTAGAAGGGACTTATCGCATTGCTGATAGTT----GAATGCAACGTTTCATATGGAGAGC 220
*** **** * * ** *** *** * * * *** **** * **
consensus_9960#0 CTTTTGAAGAGTTTGAAAGAGTAATGGCTGCTTGTTTTGAAGTCTTTTCAACATGGGACG 718
consensus_9960#1 CATCCGAAAAGTTCAAAAATCTCA--ACTG--AGAACTGAAGCTCTT-----ATCGGCCT 271
* * *** **** *** * * *** * ***** ** ** ** *
consensus_9960#0 ATGAGTACGACCGACTTCAAAGCTTAATGCGGGATATAATTAAGAAAAAGCGGGATGAA- 777
consensus_9960#1 CTAAA----ACC--CCTCCCCGTTTGATGAATACGATACTTTGGACTCTGTTATTTGTAA 325
* * *** * ** * ** *** *** ** ** * ** *
consensus_9960#0 ---CAACTACGGATGATATGGCG-AAGTAATCCAGCCCACCGTCGACTACAGCTGCGTCT 833
consensus_9960#1 ATCTAACTTCAGGAAGGATGGTGTAAGAAACACAGGAATCTGTTGACT-CATCATCATC- 383
**** * * **** * *** ** *** * ** **** ** * * **
consensus_9960#0 GGATCAAATGAGAAAGTTCCGA-CATCAACATGAACAGTTAAGGCAGGTAATAGTTCGCG 892
consensus_9960#1 GTCTCTGGTGGAAAGTTTCTGAACAACAAGTGAATGAACTTGAGCATCAGATA---TGAA 440
* ** ** ** *** ** ** *** * * * *** *** *
consensus_9960#0 TTTTAAGACCTGCACGTAGTG-CTCAAGCAGATAAAACCAAAGATACGCCGGCTGAGTCG 951
consensus_9960#1 CTTTTTGATTAGCTCTTGGCAACTCGGGTCATTTAAA--------------GTTGACTCT 486
*** ** ** * * * *** * * *** * *** **
consensus_9960#0 AATGACCTGTCAACTATCAATGGAGTGGTTGTAAGTGAGAGTGGTGGCAAGATTCTTCCA 1011
consensus_9960#1 AAC-ACTAACGAACCGTCGTTGGTCTC-TTCCAA--GAGAGTGCATACGATTTTATGCAC 542
** ** *** ** *** * ** ** ******* * * ** * *
consensus_9960#0 AAAGCCGTTGGGAA--AGAACAACCACTTCTAGATGCATCAGATGCTAATGCA-ATAGAA 1068
consensus_9960#1 ATATTTGCTGAAAACTATGATATCAGCTAGTAAA-ACAGTTGGCGGTAATGGATNTAGCA 601
* * * ** ** * * * * ** ** * ** * * ***** * *** *
consensus_9960#0 GAGGTAAACTTAGCTTATGAGATAGTGAAGGAGATCGATTGTTTGGACGTTACTAAAGAA 1128
consensus_9960#1 CGGGATCAACCGACGTATCTGCCA-TAAATGCAAACGACAGTTT--ACGTTGGGTAGCTA 658
** * * *** * * * ** * * *** **** ***** * *
consensus_9960#0 GGTAGTGAAGTGTGGGAAGCGGCAGTTAAACGGTATGATGAACGGATTGATCGTGTGGAA 1188
consensus_9960#1 TTTTGTGAATAACGCG-------------------------------------------- 674
* ***** * *
consensus_9960#0 ACTCGAATAGCTGCACGTCTTCGAGATCTCCTAAGAACTG 1228
consensus_9960#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||