These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1125 fasta sequence [CCATTAATTCGGCACGAGCGCGCTTNATTGAAAATGAATGTAGTAGGTGAATATAT-AGACT-GGATGAACA-GGATTTTTAAAATAAGCATGGAAAGAGCAGATCCCAGAGTCTCTTCGTTGCTTCTAATGAGTTCAGTT-AATAGTTTATTGTTTGTGATCATTGCCTACCTAATATTAGTCTATTATGGATTGAAGTTCATGAAAGGAAGGAATCCTTTCTGTATAAATCGACTCGTTTTTACGTATGATTGGATTATGGTAGTTATGAATGCCTATATGCTATATGAATCCATAGCAGTCGCATTTAATGAAAATTACTCGATGTACTGTCAAAAAGTTGATTACAGCTCAAATCGTAACGCTTTAAGATTAGTTCGAGCTGTTTGGTTATTTCATATATCAAAAGTGATAGAATGTTTAGATACATTCTTTTTTATAATTCGTGGTCGAACACATCTTGTCACATGGTTACATGTCTATCATCATTGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGG-ACCTAAATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAATTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCACTATCATCATGCATATCATANATCG-AAAAGCAAAATTTATGTAAAGCAACTGATCACAGTTCAATANACATTCAAACAAATGGAAATCTTTAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGACANTATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTT-ACAGTAAC-AAAT-AAAACAAG-ATGTG-ATACA-TTNATATCATTAAA---TTTCC-TG-TAT-ATAG-ATCATAACTAGNGAAATCTACTCTCCATGATTATAATAGATCATCTAATGATCTCTTTTGTTATTGAAAGAA] [+] EMBL CD081658 [CCATTAATTCGGCACGAGCGCGCTTNATTGAAAATGAATGTAGTAGGTGAATATAT AGACT GGATGAACA GGATTTTTAAAATAAGCATGGAAAGAGCAGATCCCAGAGTCTCTTCGTTGCTTCTAATGAGTTCAGTT AATAGTTTATTGTTTGTGATCATTGCCTACCTAATATTAGTCTATTATGGATTGAAGTTCATGAAAGGAAGGAATCCTTTCTGTATAAATCGACTCGTTTTTACGTATGATTGGATTATGGTAGTTATGAATGCCTATATGCTATATGAATCCATAGCAGTCGCATTTAATGAAAATTACTCGATGTACTGTCAAAAAGTTGATTACAGCTCAAATCGTAACGCTTTAAGATTAGTTCGAGCTGTTTGGTTATTTCATATATCAAAAGTGATAGAATGTTTAGATACATTCTTTTTTATAATTCGTGGTCGAACACATCTTGTCACATGGTTACATGTCTATCATCATTGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGG ACCTAAATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAATTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCACTATCATCATGCATATCATANATCG AAAAGCAAAATTTATGTAAAGCAACTGATCACAGTTCAATANACATTCAAACAAATGGAAATCTTTAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGACANTATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTT ACAGTAAC AAAT AAAACAAG ATGTG ATACA TTNATATCATTAAA TTTCC TG TAT ATAG ATCATAACTAGNGAAATCTACTCTCCATGATTATAATAGATCATCTAATGATCTCTTTTGTTATTGAAAGAA] [+] EMBL CD077398 [ ggcacgaggATGAATGTAGTAGGTGAATATAT AGACT GGATGAACA GGATTTTTAAAATAAGCATGGAAAGAGCAGATCCCAGAGTCTCTTCGTTGCTTCTAATGAGTTCAGTT AATAGTTTATTGTTTGTGATCATTGCCTACCTAATATTAGTCTATTATGGATTGAAGTTCATGAAAGGAAGGAATCCTTTCTGTATAAATCGACTCGTTTTTACGTATGATTGGATTATGGTAGTTATGAATGCCTATATGCTATATGAATCCATAGCAGTCGCATTTAATGAAAATTACTCGATGTACTGTCAAAAAGTTGATTACAGCTCAAATCGTAACGCTTTAAGATTAGTTCGAGCTGTTTGGTTATTTCATATATCAAAAGTGATAGAATGTTTAGATACATTCTTTTTTATAATTCGTGGTCGAACACATCTTGTC ] [+] EMBL CD083238 [ TATATNAGACTGGGATGAACAGGGATTTTTAAATTAAGCATGGAAAGAGCACATCCCAGAGTCTCTTCGTTGCTTCTAATGAGTTCAGTT AATAGTTTATTGTTTGTGATCATTGCCTACCTAATATTAGTCTATTATGGATTGAAGTTCATGAAAGGAAGGAATCCTTTCTGTATAAATCGACTCGTTTTTACGTATGATTGGATTATGGTAGTTATGAATGCCTATATGCTATATGAATCCATAGCAGTCGCATTTAATGAAAATTACTCGATGTACTGTCAAAAAGTTGATTACAGCTCAAATCGTAACGCTTTAAGATTAGTTCGAGCTGTTTGGTTATTTCATATATCAAAAGTGATAGAATGTTTAGATACATTCTTTTTTATAATTCGTGGTCGAACACATCTTGTCACATGGTTACATGTCTATCATCATTGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGGNACCT AATGGAGAAAATACTTATGGTGGAAACG ] [+] EMBL CD077389 [ TGAGTTCATTTGAATAGTTTATTGTTTGTGATCATTGCCTACCTAATATTAGTCTATTATGGATTGAAGTTCATGAAAGGAAGGAATCCTTTCTGTATAAATCGACTCGTGTTTACGTATGATTGGATTATGGTAGTTA ] [-] EMBL CD178240 [ ACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGAAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGG ACCTAAATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACGAATGATTCAATTTACCTATGGAATTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCACTATCATCATGCATATCATAAATCGAAAAAGCAAAATTTATGTAAAGCAACTGATCACAGTTCAATAAACATTCAAACAAATGGAAATCTTAAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGACAATATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTTCACAGTAACAAAATAAAAACAAGAATGTGTATACATTTCATATCATTAAATTTTTTCCATGTTATAATAGAATCATtatatt ] [+] EMBL CD069156 [ GGCTGGAGTGAAATGGGTAGCTGGAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGG ACCTAAATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAATTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCA ] [-] EMBL CD165784 [ GCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGG ACCTAAATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAATTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATG ] [+] EMBL CD136350 [ AAATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAACTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATC ] [-] EMBL CD136406 [ AATGGAGAAAATACTTATGGTGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAACTTTTTATTCCTTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATC ] consensusID : consensus_9964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 469 fasta sequence [TTTCTCCCCATTACTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCACTATCATCATGCATATCATAAATCGAAAAAGCAAAATTTATGTAAAGCAACTGATCACAGTTCAATAAACATTCAAACAAATGGAAATCTTAAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGACAATATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTTCACAGTAACAAAATAAAAACAAGAATGTGTATACATTTCATATCATTAAATTTTTCCATGTTATAATAGAATCATTAAACTAGTGAAATATCATACTCTTCCATTGATATATAAATTAGTATCATTCTAAATGTATCTTCTTTTTGTTTATATGTAATAGTAAATATTT] [-] EMBL CD076773 [TTTCTCCCCATTACTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCACTATCATCATGCATATCATAAATCGAAAAAGCAAAATTTATGTAAAGCAACTGATCACAGTTCAATAAACATTCAAACAAATGGAAATCTTAAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGACAATATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTTCACAGTAACAAAATAAAAACAAGAATGTGTATACATTTCATATCATTAAATTTTTCCATGTTATAATAGAATCATTAAACTAGTGAAATATCATACTCTTCCATTGATATATAAATTAGTATCATTCTAAATGTATCTTCTTTTTGTTTATATGTAATAGTAAATAT ] [-] EMBL CD076809 [ AATGTATTTTATCAAGCCACTCTTCTATTACTTTTCTATAATCCCTATCATCAGGCATATCATAAATCGAAAAAGCAAAATTTATGTAAAGCAACTGATCCCAGTTCAATAAACATTCAAACAAATGGAAATTTTAAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGCCAATATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTTCCCAGTAACAAAATAAAAACAAGAAGGGGTATACATTTCATATCATTAAATTTTTCCATGTTATAATAGAATCATTAAACTAGTGAAATATCATACTTTTCCATTGATATATAAATTAGTATCATTTTAAAGGGATTTTTTTTTTGTTTATATGTAATAGTAAATATTT] consensusID : consensus_9964#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [AAAATGTGATAGAATGTCTAGATACATTCTTTTTTATAATTCGTGGTCTAACACATCTTGTCACATGGTTACATGTCTATCATCATTGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGGACCTAAATGGAGAAAATACTTATGGNNNNNNCNNNNNNN] [+] EMBL CD083198 [AAAATGTGATAGAATGTCTAGATACATTCTTTTTTATAATTCGTGGTCTAACACATCTTGTCACATGGTTACATGTCTATCATCATTGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAGGTGAATTATTTCAACCTGTCGTAGTCAACAGCGCAATTCATGTGATTATGTATAGTTACTATGCATTTGCGGCTCTTGGACCTAAATGGAGAAAATACTTATGGNNNNNNCNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9964#0 CCATTAATTCGGCACGAGCGCGCTTNATTGAAAATGAATGTAGTAGGTGAATATATAGAC 60 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 TGGATGAACAGGATTTTTAAAATAAGCATGGAAAGAGCAGATCCCAGAGTCTCTTCGTTG 120 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 CTTCTAATGAGTTCAGTTAATAGTTTATTGTTTGTGATCATTGCCTACCTAATATTAGTC 180 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 TATTATGGATTGAAGTTCATGAAAGGAAGGAATCCTTTCTGTATAAATCGACTCGTTTTT 240 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 ACGTATGATTGGATTATGGTAGTTATGAATGCCTATATGCTATATGAATCCATAGCAGTC 300 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 GCATTTAATGAAAATTACTCGATGTACTGTCAAAAAGTTGATTACAGCTCAAATCGTAAC 360 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 GCTTTAAGATTAGTTCGAGCTGTTTGGTTATTTCATATATCAAAAGTGAT---AGAATGT 417 consensus_9964#2 ----------------------------------------AAAATGTGAT---AGAATGT 17 consensus_9964#1 --------------------TTTCTCCCCATTACTTACAAGCAATGTGGTCTTAACAAAT 40 ** *** * * * * consensus_9964#0 TTAGATACATTCTTTTTTATAATTCGTGGTCGAACACATCTTGTCACATGGTTACA-TGT 476 consensus_9964#2 CTAGATACATTCTTTTTTATAATTCGTGGTCTAACACATCTTGTCACATGGTTACA-TGT 76 consensus_9964#1 CTGTATAT-TACTTCAATGTATTTTATCAAGCCACTC-TTCTATTACTTTTCTATAATCA 98 * *** * *** * ** ** * ** * * * * ** * ** * * consensus_9964#0 CTATCATCAT-TGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAG 535 consensus_9964#2 CTATCATCAT-TGCACAATGATTCCGATAACATGGGCTGGAGTGAAATGGGTAGCTGGAG 135 consensus_9964#1 CTATCATCATGCATATCATAAATCGAAAAAGCAAAATTTATGTAAAGCAACTGATCACAG 158 ********** * ** * ** * ** * ** ** * ** consensus_9964#0 GTGAAT---TATTTCAACCTGTCGTAGTC---AACAGCGCAATTCA--TGTGATTA---T 584 consensus_9964#2 GTGAAT---TATTTCAACCTGTCGTAGTC---AACAGCGCAATTCA--TGTGATTA---T 184 consensus_9964#1 TTCAATAAACATTCAAACAAATGGAAATCTTAAAAAACATGAATGAGTTTTATTTAGATT 218 * *** *** *** * * * ** ** * * * * * * * *** * consensus_9964#0 GTATAGTTACTATG--CATTTGCGGCTCTTGGACCTAA---ATGGAGAAAATACTTATGG 639 consensus_9964#2 GTATAGTTACTATG--CATTTGCGGCTCTTGGACCTAA---ATGGAGAAAATACTTATGG 239 consensus_9964#1 ATTTGGTTATTTTAACCATTTACTGACAATATATTGAATATATTATAAAAAAATATATGG 278 * * **** * * ***** * * * * ** ** **** * ***** consensus_9964#0 TGGAAACGTTACTTGACAATGCTACAAATGATTCAATTTACCTATGGAATTTTTTATTCC 699 consensus_9964#2 NNNNNNCNNNNNNN---------------------------------------------- 253 consensus_9964#1 AGAAAAAGTATATATTTTTTTTCACAGTAACAAAATAAAAACAAGAATGTGTATACATTT 338 consensus_9964#0 TTCATTTCACTTTACAAGCAATGTGGTCTTAACAAATCTGTATATTACTTCAATGTATTT 759 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 CATATCATTAAATTTTTCCATGTTATAATAGAATCATTAAACTAGTGAAATATCATACTC 398 consensus_9964#0 TATCAAGCCACTCTTCTATTACTTTTCTATAATCACTATCATCATGCATATCATANATCG 819 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 TTCCATTGATATATAAATTAGTATCATTCTAAATGTATCTTCTTTTTGTTTATATGTAAT 458 consensus_9964#0 AAAAGCAAAATTTATGTAAAGCAACTGATCACAGTTCAATANACATTCAAACAAATGGAA 879 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 AGTAAATATTT------------------------------------------------- 469 consensus_9964#0 ATCTTTAAAAACATGAATGAGTTTTATTTAGATTATTTGGTTATTTTAACCATTTACTGA 939 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 CANTATATTGAATATATTATAAAAAAATATATGGAGAAAAAGTATATATTTTTTTTACAG 999 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 TAACAAATAAAACAAGATGTGATACATTNATATCATTAAATTTCCTGTATATAGATCATA 1059 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 ACTAGNGAAATCTACTCTCCATGATTATAATAGATCATCTAATGATCTCTTTTGTTATTG 1119 consensus_9964#2 ------------------------------------------------------------ consensus_9964#1 ------------------------------------------------------------ consensus_9964#0 AAAGAA 1125 consensus_9964#2 ------ consensus_9964#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||