These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1024 fasta sequence [CGGTACTGCTGGCTACTACAAGCC-TTAGCGATCTAAA-TGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGTAGTACCAATTTTAGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCTATCAAATCCTGAAAACTTCTTTGTGATATCTTCTGATTTTTGTCACTGGGGAAAAAGGTTTCAGTACACCTACTATGATCAAAGTAAAGGAGCAATCTGGCAATCCATACAAGCACTTGATGAAACAGGAATGGAGTTAATTGAACGACTTGCTCCTTCTGAATTTACAAGTTACTTAGAGCAATATGGTAACACCATATGCGGAAGACACCCGATAGGCGTACTACTGCANATCGTTGCGTACTTACGAAGGAATATGCCCCATAATATTNTAACATGAAGNTTGTACGATATGCTCAATCAGAACACTNGGTATATATGAAACCATCATCTGTCAGCTATGCAGCCCGTGTGCTACAATATCNTGATATAAGTACTCNTTCCTTGCATATATACGTGTGTATCGATGTTACATTAAGTAAAAAAATCAAAGTTTAGGGGATATTATTTATTTATATATA] [+] EMBL CD083455 [CGGTACTGCTGGCTACTACAAGCC TTAGCGATCTAAA TGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTAC ] [+] EMBL CD133360 [ CTACTACAAACCTTTAGCGATCTAAA TGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGCCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAG AACAGGGGAGTTT ] [+] EMBL CD083628 [ CGA CTAAATTGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTACCAAGGGAA ] [+] EMBL CD062990 [ TAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGG ] [+] EMBL CD080648 [ GCTATCATTTCACC CATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGTAGTACCAATTTTAGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCTATCAAATCCTGAAAACTTCTTTGTGATATCTTCTGATTTTTGTCACTGGGGAAAAAGGTTTCAGTACACCTACTATGATCAAAGTAAAGGAGCAATCTGGCAATCCATACAAGCACTTGATGAAACAGGAATGGAGTTAATTGAACGACTTGCTCCTTCTGAATTTACAAGTTACTTAGAGCAATATGGTAACACCATATGCGGAAGACACCCGATAGGCGTACTACTGCANATCGTTGCGTACTTACGAAGGAATATGCCCCATAATATTNTAACATGAAGNTTGTACGATATGCTCAATCAGAACACTNGGTATATATGAAACCATCATCTGTCAGCTATGCAGCCCGTGTGCTACAATATCNTGATATAAGTACTCNTTCCTTGCATATATACGTGTGTATCGATGTTACATTAAGTAAAAAAATCAAAGTTTAGGGGATATTATTTATTTATATATA] consensusID : consensus_9969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [GGCCAGAATTCGGCACGAGGCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGTAGTACCAATTTTAGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCTATCAAATCCTGAAAACTTCTTTGTGATATCTTCTGATTTTTGTCACTGGGGAAAAAGGTTTCAGTACACCTACTATGATCAAAGTANAGGAGCAATCTGGCAATCCATACCAGCACTTGATGANACAGGAATGGAGTTAATTGAACGACTTGCTCCTTCTGAATTTACAGTTACTTAGAGC] [+] EMBL CD079298 [GGCCAGAATTCGGCACGAGGCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGTAGTACCAATTTTAGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCTATCAAATCCTGAAAACTTCTTTGTGATATCTTCTGATTTTTGTCACTGGGGAAAAAGGTTTCAGTACACCTACTATGATCAAAGTANAGGAGCAATCTGGCAATCCATACCAGCACTTGATGANACAGGAATGGAGTTAATTGAACGACTTGCTCCTTCTGAATTTACAGTTACTTAGAGC] [-] EMBL CD201597 [ ATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGCCATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGTAGTACCAATTTTAGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCTATCAAATCCTGAAAACTTCTTTGTGATATCTTC ] consensusID : consensus_9969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 564 fasta sequence [TCGGTACTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATGTAAACTGCATATATTCAAATAGCTCTGCCCAGTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCANATGCCATATATAGCGAAGATGATGGAAGGGTAACTCCTTGCTAAATATTTATTTAGCTCATACATTTTTCTCAAGTAAATATATAACC] [+] EMBL AI067514 [TCGGTACTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATGTAAACTGCATATATTCAAGTAGCTCTGCCCACTAAACGTATTTTCGTAGTAAGTCCTGCACACTATATGAGCCTCATAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTACAGATGTATATCGAGACCTTGAAG AACATGGGAGTTTGTTAGTCTACCTTTGGA ] [+] EMBL AI068242 [TCGGTACTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATGTAAACTGCATATATTCAAATAGCTCTGCCCAGTAAACGTATTTTCGTATTACGTCCTGCACACTATATGAGCCTCACAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGCGAGTTTGTTAGTCT ] [+] EMBL AI068233 [TCGGTACTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAGCAAATAGACCCTCGTCACATGTAAACTGCATATATTCAAATATCTCTGCCCAGTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGACACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCG ] [+] EMBL AI067188 [ CTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATGTAAACTGCATATATTCAAATAGCTCTGCCCAGTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCANATGCCATATATAGCGAAGATGATGGAAGGGTAACTCCTTGCTAAATATTTATTTAGCTCATACATTTTTCTCAAGTAAATATATAACC] [+] EMBL AI068352 [ CTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAGCTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGAAATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATGCTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTCACATGTAAACTGCATATATTCAAATAGCTCTGCCCAGTAAACGTATTTTCGTATTAGGTCCTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGACTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGGAGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9969#0 --CGGTACTGCTGGCTACTACAAGCCTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAG 58 consensus_9969#1 -----------------------------------------GGCCAGA--ATTCGGCACG 17 consensus_9969#2 TCGGTACTGCTGGCTACTACAAGCCTTTAGCGATCTAAATGAGTCATGTTGTTAGGAGAG 60 * ** ** ** * consensus_9969#0 CTTCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGA 118 consensus_9969#1 AGGCTCACGCCGGTAGTTGGTATTCTGCAGAACGTGCTAAGCTAAACAACCAGTTGCAGA 77 consensus_9969#2 CTTCTCACGCCGGTAGTTGGTATTCTGCGGAACGTGCTAAGCTAAACAACCAGTTGCAGA 120 ************************* ******************************* consensus_9969#0 AATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATG 178 consensus_9969#1 AATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATG 137 consensus_9969#2 AATGGTTGTCTGAAGTAACTGTTGATAGACAACCAACCCGTGCTATCATTTCACCACATG 180 ************************************************************ consensus_9969#0 CTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTC 238 consensus_9969#1 CTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTC 197 consensus_9969#2 CTGGTTATGACTATTCGGGGCCTTGTGCTGCGTTTGCATACAAACAAATAGACCCTCGTC 240 ************************************************************ consensus_9969#0 ACAT---------------------------------TAAACGTATTTTCGTATTAGGTC 265 consensus_9969#1 ACAT---------------------------------TAAACGTATTTTCGTATTAGGTC 224 consensus_9969#2 ACATGTAAACTGCATATATTCAAATAGCTCTGCCCAGTAAACGTATTTTCGTATTAGGTC 300 **** *********************** consensus_9969#0 CTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGA 325 consensus_9969#1 CTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGA 284 consensus_9969#2 CTGCACACTATATGAGCCTCAGAGGAAAATGCGCTCTATCCACAGCGGACTTCTTCGAGA 360 ************************************************************ consensus_9969#0 CTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGG 385 consensus_9969#1 CTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGG 344 consensus_9969#2 CTCCGTTGTACTCTTTGTCAATTGGTAAAGATGTATATCGAGACCTTGAAGAAACAGGGG 420 ************************************************************ consensus_9969#0 AGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGC 445 consensus_9969#1 AGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCAAATGC 404 consensus_9969#2 AGTTTGTTAGTCTACCTTTGGACAGAGACGAGGAAGAGCATTCCATAGAGATGCANATGC 480 ******************************************************* **** consensus_9969#0 CATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGT--AGTACCAATTTT 503 consensus_9969#1 CATATATAGCGAAGATGATGGAAGGTTACCAAGGGAAATTCTCTGT--AGTACCAATTTT 462 consensus_9969#2 CATATATAGCGAAGATGATGGAAGG---------GTAACTCCTTGCTAAATATTTATTTA 531 ************************* * ** ** ** * ** **** consensus_9969#0 AGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCT 563 consensus_9969#1 AGTAGGATATTTAACTCCAGAAAGGGAAGCAGTTTATGGTCAGATTTTCTCTCGATACCT 522 consensus_9969#2 GCTCATACATTTTTCTCAAGTAAATATATAACC--------------------------- 564 * * **** *** ** ** * * consensus_9969#0 ATCAAATCCTGAAAACTTCTTTGTGATATCTTCTGATTTTTGTCACTGGGGAAAAAGGTT 623 consensus_9969#1 ATCAAATCCTGAAAACTTCTTTGTGATATCTTCTGATTTTTGTCACTGGGGAAAAAGGTT 582 consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 TCAGTACACCTACTATGATCAAAGTAAAGGAGCAATCTGGCAATCCATACAAGCACTTGA 683 consensus_9969#1 TCAGTACACCTACTATGATCAAAGTANAGGAGCAATCTGGCAATCCATACCAGCACTTGA 642 consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 TGAAACAGGAATGGAGTTAATTGAACGACTTGCTCCTTCTGAATTTACAAGTTACTTAGA 743 consensus_9969#1 TGANACAGGAATGGAGTTAATTGAACGACTTGCTCCTTCTGAATTTACA-GTTACTTAGA 701 consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 GCAATATGGTAACACCATATGCGGAAGACACCCGATAGGCGTACTACTGCANATCGTTGC 803 consensus_9969#1 GC---------------------------------------------------------- 703 consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 GTACTTACGAAGGAATATGCCCCATAATATTNTAACATGAAGNTTGTACGATATGCTCAA 863 consensus_9969#1 ------------------------------------------------------------ consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 TCAGAACACTNGGTATATATGAAACCATCATCTGTCAGCTATGCAGCCCGTGTGCTACAA 923 consensus_9969#1 ------------------------------------------------------------ consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 TATCNTGATATAAGTACTCNTTCCTTGCATATATACGTGTGTATCGATGTTACATTAAGT 983 consensus_9969#1 ------------------------------------------------------------ consensus_9969#2 ------------------------------------------------------------ consensus_9969#0 AAAAAAATCAAAGTTTAGGGGATATTATTTATTTATATATA 1024 consensus_9969#1 ----------------------------------------- consensus_9969#2 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||