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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1477 fasta sequence
[TGCGCTACGATGCCGCGCGATATCATTACTTTGCAGCTAGGACAATGTGGGAATCAAATTGGGATGGAGTTTTGGAAGCAGCTGTGTGCTGAACATGGAATCAGTCCTGAAGGTACACTTGAAGAATTCGCAACAAGTGATGCTGATCGCAAAGATGTCTTTTTCTACCAAGCAGATGATGCTCATTATATTCCTCGTGCTGTGCTACTGGACTTAGAACCACGTGTAATCAATACAATATTATCTTCGCCTTACGCTCGACTTTACAATCCAGAAAATGTATATTTATCTAAACATGGAGGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAAGAAGTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAGCTTAGAGGGCTTCGTAATGACTCATTCTATCGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTTGAACGTCTGAATTCACACTTCCCC-AAAAAACTTATTCAAACGTATTCAGTATTCCCAAATTTAGAAGAAACTAGTGATGTTGTTGTTCAGCCTTATAACAGTTTGTTAACACTTAAACGTCTAACTTTGAATGCTGATTGTGTGGTTGTTCTAAATAATACTGCTCTGCATCGTATAGCTACTGATCGTTTACATATTGAGAATCCATCATTTGCACAAATCAATCAGCTGGTCTCCAAAGTGATGTCTGCAAGTACGGCTACACTTCGTTATCCAAGCTATATGAATAATGATTTAATTGGTTTAATAGCTCCATTGACTCCAACTCCACGATTACATTTCTTAATGACTGGTTATACTCCATTAACAACAGATACTGAAGTTCCGACTATTCGACGAACAACTGTATTCGATGTCATGAGACGTTTATTACAGCCAAAAAATATGATGGTCTCCACTCCAACACAGCGCGGTGTCAGTCATTGTTATGTTTCTATACTAAATATAATCCAAGGAGAAGTCGATCCTACTGAAGTACATAAATCACTACAAAGGATTCGAGAACGCCGTATGGCTCAGTTTATACCTTGGGGTCCAGCTAGCATTCAAGTCGCTCTGTCTAGGCGATCTCCATATGTTCAGACACCACATCGTGTTAGTGGTCTTTTACTTGCAAATCATACAAGCATATCAACTCTTTTTCTACGTACCTTAGCTCAGTATGATAAATTACGTACTCGTGGTGCTTTTATTGAACAATTTCGTAAGGAAGAAGTATTTCGTGATGATCCAGAATTAAAAGAATTTTCTGACAGTCGACAAGTTGTTCATAATTTAATTGAAGAACATAGTGCAGCAACTCGATCTGATTATATTCATTGGNGTGCTCAACGTGCTGCCGCAGTAGCTGCAACTCAAGCAGCGGCCGCGGCAGCTGCCAATCC-AACCCTTGAA-TTCTTAT-AGA-TTTTTTG-ACATCAATG-TTTTTTGGGT-AAAACTATTAGGTTAC]
[+] EMBL CD181151 [TGCGCTACGATGCCGCGCGATATCATTACTTTGCAGCTAGGACAATGTGGGAATCAAATTGGGATGGAGTTTTGGAAGCAGCTGTGTGCTGAACATGGAATCAGTCCTGAAGGTACACTTGAAGAATTCGCAACAAGTGATGCTGATCGCAAAGATGTCTTTTTCTACCAAGCAGATGATGCTCATTATATTCCTCGTGCTGTGCTACTGGACTTAGAACCACGTGTAATCAATACAATATTATCTTCGCCTTACGCTCGACTTTACAATCCAGAAAATGTATATTTATCTAAACATGGAGGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAAGAAGTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAGCTTAGAGGGCTTCGTAATGACT ]
[+] EMBL CD156582 [ GCGCTACGATGCCGCGCGATATCATTACTTTGCAGCTAGGACAATGTGGGAATCAAATTGGGATGGAGTTTTGGAAGCAGCTGTGTGCTGAACATGGAATCAGTCCTGAAGGTACACTTGAAGAATTCGCAACAAGTGATGCTGATCGCAAAGATGTCTTTTTCTACCAAGCAGATGATGCTCATTATATTCCTCGTGCTGTGCTACTGGACTTAGAACCACGTGTAATCAATACAATATTATCTTCGCCTTACGCTCGACTTTACAATCCAGAAAATGTATATTTATCTAAACATGGAGGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAAGAAGTGTTTGATATTATTGATCGCGAAGCCGAAGGAAGTGATAGCTTAGAGGGCTTCGTAATGACTCATTCTATCGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTCGAACGc ]
[+] EMBL CD156784 [ GCTACGATGCCGCGCGATATCATTACTTTGCAGCTAGGACAATGTGGGAATCAAATTGGGATGGAGTTTTGGAAGCAGCTGTGTGCTGAACATGGAATCAGTCCTGAAGGTACACTTGAAGAATTCGCAACAAGTGATGCTGATCGCAAAGATGTCTTTTTCTACCAAGCAGATGATGCTCATTATATTCCTCGTGCTGTGCTACTGGACTTAGAACCACGTGTAATCAATACAATATTATCTTCGCCTTACGCTCGACTTTACAATCCAGAAAATGTATATTTATCTAAACATGGAGGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAAGAAGTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAGCTTAGAGGGCTTCGTAATGACTCACTCTATCGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTTGAACGTCTGAATTCACACTTCCCC ANAAAA ]
[+] EMBL CD115105 [ TATATTTATCTAAACATGGAGGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAACAAGTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAACTTAGAGGGCTTCGTAATGACTCATTCTATCGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTTGAACGTCTGAATTCACACCTCCCC AAAAAACTTATTCAAACGTATTCAGTATTCCCAAATTTAGAAGAAACTAGTGATGTTGTTGTTCAGCCTTATAACAGTTTGTTAACACTTAAACGTCTAACTTTGAATGCTGATTGTGTGGTTGTTCTAAATAATACTGCTCTGCATCGTATAGCTACTGATCGTTTACATATTGAGAATCCATCATTTGCACA ]
[+] EMBL CD115100 [ TATATTTATCTAAACATGGAGGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAAGAAGTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAGCTTATAGGGCTTCGTAATGACTCATTCTATCGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTTGAACGTCTGAATTCACACCTCCCC AAAAAACTTATTCAAACGTATTCAGTATTCCCAAATTTAGAAGAAACTAGTGATGTTGTTGTTCAGCCTTATAACAGTTTGTTAACACTTAAACGTCTAACTTTGAAT ]
[-] EMBL CD177715 [ GTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAGCTTAGAGGGCTTCGTAATGACTCATTCTATTGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTTGAACGTCTGAATTCACACTTCCCCAAAAAAACTTATTCAAACGTATTCAGTATTCCCAAATTTAGAAGAAACTAGTGATGTTGTTGTTCA ]
[+] EMBL BG932423 [ C AAAAAACTTATTCAAACGTATTCAGTATTCCCAAATTTAGAAGAAACTAGTGATGTTGTTGTTCAGCCTTATAACAGTTTGTTAACACTTAAACGTCTAACTTTGAATGCTGATTGTGTGGTTGTTCTAGATAATACTGCTCTGCATCGTATAGCTACTGATCGTTTACATATTGAGAATCCATCATTTGCACAAATCAATCAGCTGGTCTCCAAAGTGATGTCTGCAAGTACGGCTACACTTCGTTATCCAAGCTATATGAATAATGATTTAATTGGTTTAATAGCTCCATTGACT ]
[+] EMBL CD079241 [ gnGTCTCCAAAGTGATGTCTGCAAGTACGGCTACACTTCGTTATCCAAGCTATATGAATAATGATTTAATTGGTTTAATAGCTCCATTGACTCCAACTCCACGATTACATTTCTTAATGACTGGTTATACTCCATTAACAACAGATACTGAAGTTCCGACTATTCGACGAACAACTGTATTCGATGTCATGAGACGTTTATTACAGCCAAAAAATATGATGGTCTCCACTCCAACACAGCGCGGTGTCAGTCATTGTTATGTTTCTATACTAAATATAATCCAAGGAGAAGTCGATCCTACTGAAGTACATAAATCACTACAAAGGATTCGAGAACGCCGTATGGCTCAGTTTATACCTTGGGGTCCAGCTAGCATTCAAGTCGCTCTGTCTAGGCGATCTCCATATGTTCAGACACCACATCGTGTTAGTGGTCTTTTACTTGCAAATCATACAAGCATATCAACTCTTTTTCTACGTACCTTAGCTCAGTATGATAAATTACGTACTCGTGGTGCTTTTATTGAACAATTTCGTAAGGAAGAAGTATTTCGTGATGATCCAGAATTAANAGAATTTTCTGACAGTC ]
[+] EMBL CD136412 [ TATCCAAGCTATATGAATAATGATTTAATTGGTTTAATAGCTCCATTGACTCCAACTCCACGATTACATTTCTTAATGACTGGTTATACTCCATTAACAACAGATACTGAAGTTCCGACTATTCGACGAACAACTGTATTCGATGTCATGAGACGTTTATTACAGCCAAAAAATATGATGGTCTCCACTCC ]
[+] EMBL CD078631 [ ATTTAATTGGTTTAATAGCTCCATTGACTCCAACTCCACGATTACATTTCTTAATGACTGGTTATACTCCATTAACAACAGATACTGAAGTTCCGACTATTCGACGAACAACTGTATTCGATGTCATGAGACGTTTATTACAGCCAAAAAATATGATGGTCTCCACTCCAACACAGCGCGGTGTCAGTCATTGTTATGTTTCTATACTAAATATAATCCAAGGAGAAGTCGATCCTACTGAAGTACATAAATCACTACAAAGGATTCGAGAACGCCGTATGGCTCAGTTTATACCTTGGGGTCCAGCTAGCATTCAAGTCGCTCTGTCTAGGCGATCTCCATATGTTCAGACACCACATCGTGTTAGTGGTCTTTTACTTGCAAATCATACAAGCATATCAACTCTTTTTCTACGTACCTTAGCTCAGTATGATAAATTACGTACTCGTGGTGCTTTTATTGAACAATTTCGTAAGGAAGAAGTATTTCGTGATGATCCAGAATTAAAAGAATTTTCTGACAGTCGACAAGTTGTTCATAATTTAATTGAAGAACATAGTGCAGCAACTCGATCTGATTATATTCATTGGNGTGCTCAACGTGCTGCCGCAGTAGCTGCAACTCAAGCAGCGGCCGCGGCAGCTGCCAATCC AACCCTTGAA TTCTTAT AGA TTTTTTG ACATCAATG TTTTTTGGGT AAAACTATTAG ]
[-] EMBL CD073094 [ TTCGAGAACGCCGTATGGCTCAGTTTATACCTTGGGGTCCAGCTAGCATTCAAGTCGCTCTGTCTAGGCGATCTCCATATGTTCAGACACCACATCGTGTTAGTGGTCTTTTACTTGCAAATCATACAAGCATATCAACTCTTTTTCTACGTCCCTTAGCTCAGTATGATAAATTACGTACTCGTGGTGCTTTTATTGAACAATTTCGTAAGGAAGAAGTATTTCGTGATGATCCAGAATTAAAAGAATTTTCTGACAGTCGACAAGTTGTTCATAATTTAATTGAAGAACATAGTGCAGCAACTCGATCTGATTATATTCATTGGGGTGCTCAACGTGCTGCCGCAGTAGCTGCAACTCAAGCAGCGGCCGCGGCAGCTGCCAATCCAAACCCTTGAATTTCTTATAAGATTTTTTTGTACATCAATGTTTTTTTGGGTAAAAACTATTTAGTTAC]
consensusID : consensus_9975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence
[AGCGTTTTTTTTAATCAAAAACCATATAAAAAAAAACTAAAGGTTCTTTAAAAAAGACAAACCTATTTAAAAAAATGTTGAGACACATTTGAAAAGTATGAAATGTGGTTTTTGTAACTAAATAGTTTTTACCCAAAAAAACATTGATGTACAAAAAAATCTTATAAGAAATTCAAG]
[+] EMBL CD116309 [AGCGTTTTTTTTAATCAAAAACCATATAAAAAAAAACTAAAGGTTCTTTAAAAAAGACAAACCTATTTAAAAAAATGTTGAGACACATTTGAAAAGTATGAAATGTGGTTTTTGTAACTAAATAGTTTTTACCCAAAAAAACATTGATGTACAAAAAAATCTTATAAGAAATTCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9975#0 TGCGCTACGATGCCGCGCGATATCATTACTTTGCAGCTAGGACAATGTGGGAATCAAATT 60
consensus_9975#1 ---------------------AGCGTTTTTTTTAATCAAAAACCATATAAAAAAAAACTA 39
* * ** *** * * * ** ** * ** ** *
consensus_9975#0 GGGATGGAGTTTTGGAAGCAGCTGTGTGCTGAACATGGAATCAGTCCTGAAGGTACACTT 120
consensus_9975#1 AAGGT----TCTTTAAAAAAGACAAAC-----CTATTTAAAAAAATGTTGAGACACATTT 90
* * * ** ** ** ** ** * * ** *** **
consensus_9975#0 GAAGAATTCGCAACAAGTGATGCTGATCGCAAAGATGTCTTTTTCTACCAAGCAGATGAT 180
consensus_9975#1 GAAAAGTATGAAAT--GTGGTTTTTGTAACTAAATAGTTTTTACCCAAAAAAACATTGAT 148
*** * * * ** *** * * * * ** ** *** * * ** ****
consensus_9975#0 GCTCATTATATTCCTCGTGCTGTGCTACTGGACTTAGAACCACGTGTAATCAATACAATA 240
consensus_9975#1 GTACAAAAAAATCTT-ATAAGAAATTCAAG------------------------------ 177
* ** * * ** * * * *
consensus_9975#0 TTATCTTCGCCTTACGCTCGACTTTACAATCCAGAAAATGTATATTTATCTAAACATGGA 300
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GGTGGTGCCGGTAATAATTGGGCAGCTGGATTTACACAAGGTGAAAAACTGGAGGAAGAA 360
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GTGTTTGATATTATTGATCGTGAAGCCGAAGGAAGTGATAGCTTAGAGGGCTTCGTAATG 420
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 ACTCATTCTATCGCTGGAGGAACAGGGTCTGGGATGGGTTCATTTATTCTTGAACGTCTG 480
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 AATTCACACTTCCCCAAAAAACTTATTCAAACGTATTCAGTATTCCCAAATTTAGAAGAA 540
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 ACTAGTGATGTTGTTGTTCAGCCTTATAACAGTTTGTTAACACTTAAACGTCTAACTTTG 600
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 AATGCTGATTGTGTGGTTGTTCTAAATAATACTGCTCTGCATCGTATAGCTACTGATCGT 660
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 TTACATATTGAGAATCCATCATTTGCACAAATCAATCAGCTGGTCTCCAAAGTGATGTCT 720
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GCAAGTACGGCTACACTTCGTTATCCAAGCTATATGAATAATGATTTAATTGGTTTAATA 780
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GCTCCATTGACTCCAACTCCACGATTACATTTCTTAATGACTGGTTATACTCCATTAACA 840
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 ACAGATACTGAAGTTCCGACTATTCGACGAACAACTGTATTCGATGTCATGAGACGTTTA 900
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 TTACAGCCAAAAAATATGATGGTCTCCACTCCAACACAGCGCGGTGTCAGTCATTGTTAT 960
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GTTTCTATACTAAATATAATCCAAGGAGAAGTCGATCCTACTGAAGTACATAAATCACTA 1020
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 CAAAGGATTCGAGAACGCCGTATGGCTCAGTTTATACCTTGGGGTCCAGCTAGCATTCAA 1080
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GTCGCTCTGTCTAGGCGATCTCCATATGTTCAGACACCACATCGTGTTAGTGGTCTTTTA 1140
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 CTTGCAAATCATACAAGCATATCAACTCTTTTTCTACGTACCTTAGCTCAGTATGATAAA 1200
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 TTACGTACTCGTGGTGCTTTTATTGAACAATTTCGTAAGGAAGAAGTATTTCGTGATGAT 1260
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 CCAGAATTAAAAGAATTTTCTGACAGTCGACAAGTTGTTCATAATTTAATTGAAGAACAT 1320
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 AGTGCAGCAACTCGATCTGATTATATTCATTGGNGTGCTCAACGTGCTGCCGCAGTAGCT 1380
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 GCAACTCAAGCAGCGGCCGCGGCAGCTGCCAATCCAACCCTTGAATTCTTATAGATTTTT 1440
consensus_9975#1 ------------------------------------------------------------
consensus_9975#0 TGACATCAATGTTTTTTGGGTAAAACTATTAGGTTAC 1477
consensus_9975#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||