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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 859 fasta sequence
[CGAGCCAAGATTCGGCACGAGGCTATTGTACTTAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT-TGATCA-AGAGAAAGAA-ATTTCCA-ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT-ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAAGAAGGAATTATGAAACCTACCAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGTTGTATGTATGTATATTATT]
[+] EMBL CD082663 [CGAGCCAAGATTCGGCACGAGGCTATTGTACTTAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGA ]
[+] EMBL CD149347 [ ATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAAAGCAAGACTCAACAGCTGCTTGATNACAATTGGTATCTTCACTTTAATTTTCTTTATCCGTCTC TTTTATTACA ]
[+] EMBL CD059336 [ TTCAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGATATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTC ]
[+] EMBL CD135377 [ GTTGGGCATATGAAACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTGCTCAACACAAACCCTTACTCCAAATG ]
[+] EMBL CD145631 [ AAACAGCCGCACTACTATGATCAGGGAG AAGAATGCTTCCAGATGAATTACCTTATTCCCCGTACAGAGAATGCTTTAATCCTGACTATGACATTACATCCAGACTTGACAACTATGGTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAGCAATTGTTATTTTCACTTTAATTNTCTTTATCCGTCTCTTTTTATTACAAGC ]
[+] EMBL CD153326 [ AACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCCTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCC ]
[+] EMBL CD145548 [ AACAGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAA ]
[-] EMBL CD145668 [ ACCGCTGTACTACT TGATCA AGAGAAAGAA ATTTCCA ATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCTACAGATGTTTGATAACAATTGTGATTTTCACTTTAATTTTCTTTATCCGTGTCTTTTTATTACAAGCACATCGTTGTCTACACAAACCCTTACTCCt ]
[-] EMBL CD149491 [ TATTCCCCGTACAATGAATTCTTTTATCCTGATTAT ACATTACATCCAGACTTGACAANTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAA ]
[-] EMBL CD076259 [ GGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTTTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTTTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAAGAAGGAATTATGAAACCTACCAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGTTGTATGTATGTATATTATT]
[-] EMBL CD133922 [ CTGATGTACCGAATGATTATCTACCGAACTTTTGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAAGACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCTTTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTAGAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGAAACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATATAATTTCTCCGAAATACAAAT ]
consensusID : consensus_9983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACAACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTA]
[+] EMBL CD197403 [ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACAACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAATCTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTATTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAAACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTACATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAATGCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAACTTGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9983#0 -----------------------------------CGAGCCAAGATT----CGGCACGAG 21
consensus_9983#1 ATGTATTTCAGTGTTTTCCGAGCCGTTATAAATGACGTAGTTGCATTTTATCGACCAACA 60
** *** ** *
consensus_9983#0 GCTATTGTACTT-AATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAAT 80
consensus_9983#1 ACTATTGTACTTCAATGTGGCGCTGATTCGCTTGGCTGTGATCGATTAGGTGTATTCAAT 120
*********** ***********************************************
consensus_9983#0 CTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTA 140
consensus_9983#1 CTGTCCATTAGAGGTCACGGGAGATGTGTTCGAATGGTTAAAGAACTTGGTCTACCATTA 180
************************************************************
consensus_9983#0 TTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAA 200
consensus_9983#1 TTGGTTGTTGGCGGTGGCGGTTATACTGTACGGAATGTAGCACGCTGTTGGGCATATGAA 240
************************************************************
consensus_9983#0 ACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTAC 260
consensus_9983#1 ACAGCTGTACTACTTGATCAAGAGAAAGAAATTTCCAATGAATTACCTTATTCCCCGTAC 300
************************************************************
consensus_9983#0 ATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAAT 320
consensus_9983#1 ATTGAATTCTTTTATCCTGATTATACATTACATCCAGACTTGACAACTAAGTTGGATAAT 360
************************************************************
consensus_9983#0 GCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAA 380
consensus_9983#1 GCGAACACACGGCAATATATTGAAGCGCTACGAATGACAGTTCATGATAATTTAAAACAA 420
************************************************************
consensus_9983#0 CTTGTACATGCTCCAAGTGTTCAATTTACTGATGTACCGAATGATTATCTATCGAACTTT 440
consensus_9983#1 CTTGTA------------------------------------------------------ 426
******
consensus_9983#0 TGTAATGATTCGAATGATGAACGGGAAAAACCAAACGAAATGTTTGTTGAAGAAGAGCAA 500
consensus_9983#1 ------------------------------------------------------------
consensus_9983#0 GACTCAACAGCTGCTTGATAACAATTGTTATTTTCACTTTAATTTTCTTTATCCGTCTCT 560
consensus_9983#1 ------------------------------------------------------------
consensus_9983#0 TTTTATTACAAGCACATCGTTCTCAACACAAACCCTTACTCCAAATGATTAACAACAGTA 620
consensus_9983#1 ------------------------------------------------------------
consensus_9983#0 GAAAAGACCACTTTTCTGAAGATTTAGGTTCAATAAAAAATATTCTTGTCTCAAATGTGA 680
consensus_9983#1 ------------------------------------------------------------
consensus_9983#0 AACATTGACAATTTTAATTATTGCTATGATTACCATTATCACATGCCATGGAGAAGATAT 740
consensus_9983#1 ------------------------------------------------------------
consensus_9983#0 AATTTCTCCGAAATACAAATTGTAAAATGAAAAAAAAGAAGAAGGAATTATGAAACCTAC 800
consensus_9983#1 ------------------------------------------------------------
consensus_9983#0 CAAAAGATTATGTGTATGAAATGATGTTAATGGCAAATGTTGTATGTATGTATATTATT 859
consensus_9983#1 -----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||