These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1019 fasta sequence [CTGACACATTCATCTCGTTTATTAGCCCAGATAGGAGATACTGGAGTGATAGCTGTTCTTTCTCAAGTTATTGAAGATCTCATTCATGGTGAAATGATGCAGCTTGCACCCAACAGCGATGATGATGACAAAAGGTTTCAAACCTATTTGACGAAAACCTACCGAAAAACAGCGAGTCTTATTGCTAACAGTTGTAAAGCAGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAAAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTT-GGACTTTGTATCTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAACTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTATTCTACCTCTCTTTCTGTCCGTCTATTTAGCCTTAACCTTACCTTAATTTTACCTGTTTCTTTCTCTTAATTTACATTCACAATACCTAAAGAATGGTACATTACACTTAACTGATAGATAGTTATTCTAATTTGTATTTTCAGTTCATTATTATTACTTTTTTACCTAGTTTATATATTAATATGCAGAAAAAGAAACTTCCGCAATTTG-TTAAATAATTTGCCTTTGTTGATATATTAGTACTAGTCTGTAATTTATTTACATAACTGCTTAACCAGATCGCTATTTTTGAGAACTTATCTTTCAGCGTTTGTTCATAGAAATAGTACATGTGAAATATATATCTGTTGTAAAAAAAAAAAAAAAA] [+] EMBL CD095639 [CTGACACATTCATCTCGTTTATTAGCCCAGATAGGAGATACTGGAGTGATAGCTGTTCTTTCTCAAGTTATTGAAGATCTCATTCATGGTGAAATGATGCAGCTTGCACCCAACAGCGATGATGATGACAAAAGGTTTCAAACCTATTTGACGAAAACCTACCGAAAAACAGCGAGTCTTATTGCTAACAGTTGTAAAGCAGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAAAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTT GGACTTTGTATCTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAACTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAGCGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCT ] [+] EMBL AA559804 [ GTTTATTAGCCCAGATAGGAGATACTGGAGTGATAGCTGTTCTTTCTCAAGTTATTGAAGATCTCATTCATGGTGAAATGATGCAGCTTGCACCCAACAGCGATGATGATGACAAAAGGTTTCAAACCTATTTGACGAAAACCTACCGAAAAACAGCGAGTCTTATTGCTAACAGTTGTAAAGCAGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAAAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTTGGGACTTTGTAac ] [-] EMBL CD098457 [ TTGTTTGCTGCTCAAAGATATCCTGAAGTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTATTCTACCTCTCTTTCTGTCCGTCTATTTAGCCTTAACCTTACCTTAATTTTACCTGTTTCTTTCTCTTAATTTACATTCACAATACCTAAAGAATGGTACATTACACTTAACTGATAGATAGTTATTCTAATTTGTATTTTCAGTTCATTATTATT ] [-] EMBL CD077183 [ AACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCGGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTATTCTACCTCTCTTTCTGTCCGTCTATTTAGCCTTAATCTTACCTTAATTTTACCTGTTTCTTTCTCTTAATTTACATTCACAATACCTAAAGAATGGTACATTACACTTAACTGATAGATAGTTATTCTAATTTGTATTTTCAGTTCATTATTATTACTTTTTTACCTAGTTTATATATTAATATGCAGAAAAAGAAACTTCCGCAATTTGTTTAAATAATTTGCCTTTGTTGATATATTAGTACTAGTCTGTAATTTATTTACATAACTGCTTAACCAGATCGCTATTTTTGAGAACTTATCTTTCAGCGTTTGTTCATAGAAATAGTACATGTGAAATATAT ] [-] EMBL AI395741 [ CTTAATTTTACCTGTTTCTTTCTCTTAATTTACATTCACAATACCTAAAGATTGGTACATTACACTTAACTGATAGATAGTTATTCTAATTTGTATTTTCAGTTCATTATTATTACTTTTTTACCTAGTTTATATATTAATATGCAGAAAAAGAAACTTCCGCAATTTGTTTAAATAATTTGCCTTTGTTGATATATTAGTACTAGTCTGTAATTTATTTACATAACTGCTTAACCAGATCGCTATTTTTGAGAACTTATCTTTCAGCGTTTGTTCATAGAAATAGTACATGTAAAATATATATCTGTTGTAAAAAAAAAAAAAAAA] [-] EMBL CD087037 [ TAATTTNACCTGTTTCTTTCTCTTAATTTACATTCACAATACCTAAAGAATGGTACATTACACTTAACTGATAGATAGTTATTCTAATTTGTATTTTCAGTTCATTATTATT ] [-] EMBL CD187819 [ ATTCACAATACCTAAAGAATGGTACATTACACTTAACTGATAGATAGTTATTCTAATTTGTATTTTCAGTTCATTATTATTACTTTTTTACCTAGTTTATATATTAATATGCAGAAAAAGAAACTTCCGCAATTTG TTAAATAATTTc ] consensusID : consensus_9991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [TACAAACTATGTCTGTTTGGTTTTCAGTACTGACCTGAAAAAAATCTACTGATAAGCAAAATTGGGATTTATCATTGAATGGTAAAGCTGTAGTTAAGACGGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAGAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAAT] [-] EMBL CD197904 [TACAAACTATGTCTGTTTGGTTTTCAGTACTGACCTGAAAAAAATCTACTGATAAGCAAAATTGGGATTTATCATTGAATGGTAAAGCTGTAGTTAAGACGGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAGAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAAT] consensusID : consensus_9991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 493 fasta sequence [TGAGACTAGGTAGGTTGCTATGTTGACTGTTCCAACGCTATCACAGTGGCACATTGCTAATATGTACGAATTCGGAGAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTATTCTACCTCTCTTTCTGTCCGTCTATTTAG] [+] EMBL CD127985 [TGAGACTAGGTAGGTTGCTATGTTGACTGTTCCAACGCTATCACAGTGGCACATTGCTAATATGTACGAATTCGGAGAACATTTGGGAATGGCATTTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTATTCTACCTCTCTTTCTGTCCGTCTATTTAG] [-] EMBL CD122838 [ TTTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTACAAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACGCCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCTTTAGAATTAGTTAAACAGTCAGATGGAGTTGGTCAAACTCGGATGTTAGCTGAATTTCATTTC ] [+] EMBL CD065372 [ aggtAGGTGGAGTTGGTCAAACTCGGATGCTAGCTGAATTTCATTTCCAGGCAGCTCAACGATGTTTATTTCAATTCAGGGATTCTTTATCAAGAAGGGCTCTTCTACATGTTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTATTCTACCT ] consensusID : consensus_9991#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TGTCTGTTTGGTTTTCAGTACTGACTTGAAAAAAATCTACTGATAAGCAAAATTGAGATTAAACCGAATTGTGTATGATGAGTTGTTATCAGTAAATGTCATAGCCCACATATCTCCCAGTCTTCGTATCATCTGAAGTTATAGGGAATAATTGACAGGTCTTGTGTATATCTTTGTGGTTATTGTGAAAGGTTTAATTTCTATCCCTTGGCTAGACTAATCATTTTCTTTTAGGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAGAACATTTGGGAATGGCATCTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGG] [-] EMBL CD189404 [TGTCTGTTTGGTTTTCAGTACTGACTTGAAAAAAATCTACTGATAAGCAAAATTGAGATTAAACCGAATTGTGTATGATGAGTTGTTATCAGTAAATGTCATAGCCCACATATCTCCCAGTCTTCGTATCATCTGAAGTTATAGGGAATAATTGACAGGTCTTGTGTATATCTTTGTGGTTATTGTGAAAGGTTTAATTTCTATCCCTTGGCTAGACTAATCATTTTCTTTTAGGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGCACATTGATAATATGTACGAATTTGGAGAACATTTGGGAATGGCATCTCAATTAATCGATGATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9991#0 CTGACACATTCATCTCGTTTATTAGCCCAGATAGGAGATACTGGAGTGATAGCTGTTCTT 60 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 TCTCAAGTTATTGAAGATCTCATTCATGGTGAAATGATGCAGCTTGCACCCAACAGCGAT 120 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------TACAAACTATGTCTGTTT 18 consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 GATGATGACAAAAGGTTTCAAACCTATTTGACGAAAACCTACCGAAAAACAGCGAGTCTT 180 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 GGTTTTCAGTACTGACCTGAAAAAAATCTACTGATAAGCAAAATTGGGATTTATCATTGA 78 consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 ATTGCTAA--CAGTTGTAAAGCAGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGC 238 consensus_9991#2 ----------TGAGACTAGGTAGGTTGCTATGTTGACTGTTCCAACGCTATCACAGTGGC 50 consensus_9991#1 ATGGTAAAGCTGTAGTTAAGACGGTTGCTATGTTGACTGTCCCAACGCTATCACAGTGGC 138 consensus_9991#3 --------------------------------------------------------TGTC 4 ** * consensus_9991#0 ACATTGATAATATGTACGAATTTGGAAAACATTTGGGAATGGCATTTCAATTAATCGATG 298 consensus_9991#2 ACATTGCTAATATGTACGAATTCGGAGAACATTTGGGAATGGCATTTCAATTAATCGATG 110 consensus_9991#1 ACATTGATAATATGTACGAATTTGGAGAACATTTGGGAATGGCATTTCAATTAATCGATG 198 consensus_9991#3 TGTTTGGTTTTCAGTACTGACTTGAAAAAAATCTACTGATAA----GCAA--AATTGAGA 58 *** * * **** * * * * ** ** * ** *** *** ** consensus_9991#0 ATGTGTTGGACTTTGTATCTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTAC 358 consensus_9991#2 ATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTAC 170 consensus_9991#1 ATGTGTTGGACTTTGTAACTGATGAGGCGAATCTGGGCAAACCTACTGGGGCAGATCTAC 258 consensus_9991#3 TTAAACCGAATTGTGTA--TGATGAGTTGT-TATCAGTAAATGTCATAGCCCACAT---- 111 * * * * **** ******* * * * * *** * * * ** ** consensus_9991#0 AAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAACTAAACG 418 consensus_9991#2 AAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACG 230 consensus_9991#1 AAATGGGTCTTGCAACGGGACCCGTGTTGTTTGCTGCTCAAAGATATCCTGAAGTAAACG 318 consensus_9991#3 ------ATCTCCCA---GTCTTCGTATCATCTG-------AAGTTATAGGGAA-TAATTG 154 *** ** * *** * * ** *** *** *** *** * consensus_9991#0 CCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCT--TTAGAATTAGT 476 consensus_9991#2 CCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCT--TTAGAATTAGT 288 consensus_9991#1 CCATACTGCTGCGGCAATTCAGTTTAGATGGTGATACTGAAAGGGCT--TTAGAATTAGT 376 consensus_9991#3 ACA-GGTCTTGTG-----TATATCTTTGTGGTTATTGTGAAAGGTTTAATTTCTATCCCT 208 ** * ** * * * * **** ** ******* * ** ** * consensus_9991#0 TAAACAGTCAGATGGAGTTGGTCAAACTCGG-ATGTTAGCTGAATTT-CATTTCCA-GGC 533 consensus_9991#2 TAAACAGTCAGATGGAGTTGGTCAAACTCGG-ATGTTAGCTGAATTT-CATTTCCA-GGC 345 consensus_9991#1 TAAACAGTCAGATGGAGTTGGTCAAACTCGG-ATGTTAGCTGAATTT-CATTTCCA-GGC 433 consensus_9991#3 TGGCTAGACTAATCATTTTCTTTTAGGTTGCTATGTTGACTGTCCCAACGCTATCACAGT 268 * ** * ** ** * * * * ***** *** * * ** * consensus_9991#0 AGCTCAACGATGTT-TATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATG 592 consensus_9991#2 AGCTCAACGATGTT-TATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATG 404 consensus_9991#1 AGCTCAACGATGTT-TATTTCAATTCAGGGATTCTTTATCAAGAAAGGCTCTTCTACATG 492 consensus_9991#3 GGCACATTGATAATATGTACGAATTTGGAGAACATTTG---GGAATGGCATCTCAATTAA 325 ** ** *** * * * **** * ** *** *** *** ** * consensus_9991#0 TTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTAT 652 consensus_9991#2 TTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAATCTTAT 464 consensus_9991#1 TTGCAGCGAATTTCCTACAACGTGGTCGATAAAATCGTATTTCCTCTAGTCAAAT----- 547 consensus_9991#3 TCG-ATGATGTGTTGGACTTTGTAACTGATGAGG-CGAATCTGG---------------- 367 * * * * * ** ** *** * ** ** * consensus_9991#0 TCTACCTCTCTTTCTGTCCGTCTATTTAGCCTTAACCTTACCTTAATTTTACCTGTTTCT 712 consensus_9991#2 TCTACCTCTCTTTCTGTCCGTCTATTTAG------------------------------- 493 consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 TTCTCTTAATTTACATTCACAATACCTAAAGAATGGTACATTACACTTAACTGATAGATA 772 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 GTTATTCTAATTTGTATTTTCAGTTCATTATTATTACTTTTTTACCTAGTTTATATATTA 832 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 ATATGCAGAAAAAGAAACTTCCGCAATTTGTTAAATAATTTGCCTTTGTTGATATATTAG 892 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 TACTAGTCTGTAATTTATTTACATAACTGCTTAACCAGATCGCTATTTTTGAGAACTTAT 952 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 CTTTCAGCGTTTGTTCATAGAAATAGTACATGTGAAATATATATCTGTTGTAAAAAAAAA 1012 consensus_9991#2 ------------------------------------------------------------ consensus_9991#1 ------------------------------------------------------------ consensus_9991#3 ------------------------------------------------------------ consensus_9991#0 AAAAAAA 1019 consensus_9991#2 ------- consensus_9991#1 ------- consensus_9991#3 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||