These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 921 fasta sequence [TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG] [+] EMBL CD188982 [TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC ] [+] EMBL CD159226 [ GCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCANGATGAGTACGAACGTGTAGTTAAA ] [+] EMBL CD152673 [ GCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATCTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCATAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATT ] [+] EMBL BG930245 [ gTCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCC AAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAAT ACTTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCCCAatccat ] [+] EMBL CD155343 [ TATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGAAGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGA ] [-] EMBL CD188748 [ GCANAATGTCAGGACGATCCTTNTGAGTGTCATTTCCTTATTGAATGAACCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTA ] [-] EMBL CD190059 [ TCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAAAGTGTAGTTAAATCACTCGTTAAAGGTACTCACGAGGAGGGTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTTTAAAACATTTTATCAATGTGATGATGTAGATGGACTATTTGATTATGATGATCATGGCGAATACT ] [-] EMBL CD094292 [ GAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGT ] [-] EMBL CD181318 [ ACGAGNAGGCTAACAAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAACGAATGTAGCCGTGTTACATCACCAA ] [+] EMBL CD063134 [ CAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGAAATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCCATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTCAAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG] consensusID : consensus_9992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA] [+] EMBL CD192878 [ATGACCCTCAGAGCGGTGAGCTGCCATCTGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGTTCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCAAACATCCATTCAGCTGCACATGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGGATGAGTACGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACAAGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTCTAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGAATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA] consensusID : consensus_9992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC] [+] EMBL CD190254 [TTTGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGACTTTGTATGAAGGAGGTTATTTCAAAGTAAGTTACTCTTTTTTACGTATATTTTTAGGCACGATTATGCTTCCCTGACGATTATCCATATAGTCCTCCTACAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9992#0 TGAATTCGAGCGTAGCTGATGGCCGATGGCATCTCGTAAACCTAACGCTAGTGCTGTTAA 60 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 AGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAGTGGAGGGATTCAAAGTGAT 120 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 GGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCATATTTGGACCACCAATGAC 180 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 TTTGTATGAAGGAGGTTATTTCAAAGCACGATTATGCTTCCCTGACGATTATCCATATAG 240 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 TCCTCCTACAATGCATTTTCTTAGCAGGATGTATCACCCAAACATATATGAAAATGGTGA 300 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 AGTCTGTATATCGATTTTGCATTCCCCAGGTGATGACCCTCAGAGCGGTGAGCTGCCATC 360 consensus_9992#1 --------------------------------ATGACCCTCAGAGCGGTGAGCTGCCATC 28 consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 TGAGAGATGGAATCCGACGCAAAATGTCAGG----------------------------- 391 consensus_9992#1 TGAGAGATGGAATCCGACGCAAAATGTCAGGTTAGCATGAATCTCACTAACTTTATTCGT 88 consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 ------ACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAACCA-AACATCCATTCAGC 444 consensus_9992#1 TCAAGGACGATCCTTTTGAGTGTCATTTCCTTATTGAATGAGCCA-AACATCCATTCAGC 147 consensus_9992#2 --------------TTTGAATTCGA---GCGTAGCTGATGGCCGATGGCATCTCGTAAAC 43 ***** * * * ** *** * * **** * * * consensus_9992#0 TGCACA-TGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGG 503 consensus_9992#1 TGCACA-TGTCGATGCGTCAGTGGCTTATAGGAAGTGGAAGGAGTCCAATGGAGTTCAGG 206 consensus_9992#2 CTAACGCTAGTGCTGTTAAAGCACTCCAAAAGGAACTTAAAGATTTAAATGAGTTCCCAG 103 ** * * ** ** * * * * ** ** * **** * * * consensus_9992#0 ATGAGTA--CGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCACGAGGAGGCTAAACA 561 consensus_9992#1 ATGAGTA--CGAACGTGTAGTTAAATCACTCGTTAAAGCTACTCGCGAGGAGGCTAAACA 264 consensus_9992#2 TGGAGGGATTCAAAGTGATGGTTTCTGAAGAAGAGAACCTTTTCGTTTGGGATGTTGCCA 163 *** ** *** * * * * ** ** ** ** * ** consensus_9992#0 AGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTC 621 consensus_9992#1 AGATGGAGTCACTGTTCCAACCACCCTTGAGGAATACTGTGTTAGTGGTAGACCTGTGTC 324 consensus_9992#2 TATTTGGACCACCAAT--GACTTTGTATGAAGGAGGTTATTTCAA-AGTAAGTTACTCTT 220 * * *** * ** *** * * * * * * *** * * consensus_9992#0 TAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGA 681 consensus_9992#1 TAAAACATTTTATCAATGTGATGATGTAGATGGACTATCTGATTATGATGATCATGACGA 384 consensus_9992#2 T-------TTTACGTATATTTTTAGGCA---CGATTATGCTTCCCTGACGATTATC-CAT 269 * **** ** * * * * * ** *** *** *** ** * consensus_9992#0 ATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGATGTGAAAGAAGATGAAGA 741 consensus_9992#1 ATACTATGGCTCTGATGATGATGACAATGATGTGTCAACTGA------------------ 426 consensus_9992#2 ATAGTCCTCCTACAATGC------------------------------------------ 287 *** * ** *** consensus_9992#0 AATCAATCCTACCAAAGAGTCTCAATCCTCTACAAAGATAGATTCTGGAGTAGAAGACCC 801 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 ATGTATAAGTAAGGCGGGAAAGTCTGGGGAATCCTCGAGAGTTGTCGACCATAGAATGTC 861 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ consensus_9992#0 AAATGAATGTAGCCGTGTTACATCACCAAGCTAGTTTATCCGTCTTGTCTTTGAGCGCGG 921 consensus_9992#1 ------------------------------------------------------------ consensus_9992#2 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||