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Schistosoma mansoni
cluster # 9997 cluster # 9997       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9997#0 length = 1687 sequences # 9  
consensus_9997#1 length = 571 sequences # 1  
consensus_9997#2 length = 447 sequences # 1  
consensus_9997#3 length = 287 sequences # 1  

consensusID : consensus_9997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1687
fasta sequence
                              [TCAATTCCGAGCCACCTTCGGTTGTTAATTATCCCCAACAACCGCCCATACTCTACTGGAGTCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGATATCGAAAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGCGTCGAACTGAAGCTATTTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTATAATCGGTGCAATCGCTGCTGGGAATAGTGATCTTCTTAAGCCGTCAGAAATGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGGAAACTCAGCGTTTTGACCTTATATTTTACACGGGTGGTACAACCATTGGTCGCGAAGTTTATGTTGCCGCTGCGAAACAACTTACTCCTGTTGTTTTGGAACTTGGAGGGAAATGTCCTGTGTATATTGATTCGGATGTCAGTTTGGATGTAGCTGTCAAGCGTATTATTTACAGCAAACTTCTGAATTGTGGACAAATATGTGTTGCTGCCGATTACTTATTATGTCACGAAAAAATACTACCTGTTTTAAAAGAAAGGATTGAAGAAACCATAAAACAGTTTTTGGGCGATGATCCTCAAAAAAGTCCTGATTTTGCGCGCATCATCAATGTCAAGCATTTTCAGCGTCTTACAGGTCTACTGAAACAAACCAAAGGCAAAGTTATGGTCGGTGGCATGTCAGATGTGAATGACANATATATTGCCCCAACTGTTGTATTTGATGTTGATGAAGAGGATATATTAATGCAAGATGAGATCTTTGGGCCAATACTTCCTGTGCTGTCTGTGAAGTCACCTTCTGAAGCGATTCGGATAATTAATTCCAAAGGAAAACCTTTAGCCGTTTACGTGTTTACTCGAAACAAATCAGTATTCAATGATTTCAAAATGGCTACGTCTAGTGGTGCGATTATGATGAATGATTGTAGTGTACATACTCTTATACCAAATATTCCTTTCGGTGGTATTGGTCACTCCGGAATAGGGAACTATCGTGGTCGTTATTCGATTGAAACATTTTCCCATCGTCGCCCAGTTATTCTCAAGTCAGAAGTCGAATACATAAATAACAAAATCCGTTATTATCCGTATACTGAAAGTGGTCTGAGTTGGTTGCGTTGGAGTTTGAAGAAATCAGATAGAAATGGCTGCCAAATATTATAAAGAATCCATCTATGTTGCTTTTCACATTAACTTTTACTTATAAAATTTTTCACTCATTTTCTAACTTTGTTTTTTTGCAAGAAAAATAAACTGAGCCTAATATTTATAAATATCTTTAATGGAATGCTAATACATTACTTTGAAGTA]

[-] EMBL CD178690             [TCAATTCCGAGCCACCTTCGGTTGTTAATTATCCCCAACAACCGCCCATACTCTACTGGAGTCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGATATCGAAAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGCGTCGAACTGAAGCTATTTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTGATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD131129             [                                                                  CAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGATATCGAAAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATACGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD061012             [                                                                                                                                                                                                                                                                                                     AAGCTATTTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCGTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTATAATCGGTGCAATCGCTGCTGGGAATAGTGATCTTCTTAAGCCGTCAGAAATGACTCCGGCATGTTCTCAGCTGATTTATGAGCTTATCGCTAAGTATTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGGAAACTCAGCGTTTTGACCTTATATTTCACACGGGTGGTACAACCATTGGTCGTGAAGTAAACGTTGCCGCTGCGAAACAACTTACTCCTGTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD078310             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGGAAACTCAGCGTTTTGACCTTATATTTTACACGGGTGGTACAACCATTGGTCGCGAAGTTTATGTTGCCGCTGCGAAACAACTTACTCCTGTTGTTTTGGAACTTGGAGGGAAATGTCCTGTGTATATTGATTCGGATGTCAGTTTGGATGTAGCTGTCAAGCGTATTATTTACAGCAAACTTCTGAATTGTGGACAAATATGTGTTGCTGCCGATTACTTATTATGTCACGAAAAAATACTACCTGTTTTAAAAGAAAGGATTGAAGAAACCATAAAACAGTTTTTGGGCGATGATCCTCAAAAAAGTCCTGATTTTGCGCGCATCATCAATGTCAAGCATTTTCAGCGTCTTACAGGTCTACTGAAACAAACCAAAGGCAAAGTTATGGTCGGTGGCATGTCAGATGTGAATGACANATATATTGCCCCAACTGTTGTATTTGATGTTGATGAAGAGGATATATTAATGNCAGATGAGATCTTTGGGCCAATACTTCCTGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD078400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGGAAACTCAGCGTTTTGACCTTATATTTTACACGGGTGGTACAACCATTGGTCGCGAAGTTTATGTTGCCGCTGCGAAACAACTTACTCCTGTTGTTTTGGAACTTGGAGGGAAATGTCCTGTGTATATTGATTCGGATGTCAGTTTGGATGTAGCTGTCAAGCGTATTATTTACAGCAAACTTCTGAATTGTGGACAAATATGTGTTGCTGCCGATTACTTATTATGTCACGAAAAAATACTACCTGTTTTAAAAGAAAGGATTGAAGAAACCATAAAACAGTTTTTGGGCGATGATCCTCAAAAAAGTCCTGATTTTGCGCGCATCATCAATGTCAAGCATTTTCAGCGTCTTACAGGTCTACTGAAACAAACCAAAGGCANAGTTATGGTCGGTGGCATGTCAGATGTGAATGACANATATATTGCCCCAACTGTTGTATTTGATGTTGATGAAGAGGATATATTAATGCAAGATGAGATCTTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD197082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGTGTATATTGATTCGGATGTCAGTTTGGATGTAGCTGTCAAGCGTATTATTTACAGCAAACTTCTGAATTGTGGACAAATATGTGTTGCTGCCGATTACTTATTATGTCACGAAAAAATACTACCTGTTTTAAAAGAAAGGATTGAAGAAACCATAAAACAGTTTTTGGGCGATGATCCTCAAAAAAGTCCTGATTTTGCGCGCATCATCAATGTCAAGCATTTTCAGCGTCTTACAGGTCTACTGAAACAAACCAAAGGCAAAGTTATGGTCGGTGGCATGTCAGATGTGAATGACAAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD158485             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGAAACAAACCAAAGGCAAAGTTATGGTCGGTGGCATGTCAGATGTGAATGACAAATATATTG CCCAACTGTTGTATTTGATGTTGATGAAGAGGATATATTAATGCAAGATGAGATCTTTGGGCCAATACTTCCTGTGCTGTCTGTGAAGTCACCTTCTGAAGCGATTCGGATAATTAATTCCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD072962             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      nnnCCAACTGTTGTATTTGATGTTGATGAAGAGGATATATTAATGCAAGATGAGATCTTTGGGCCAATACTTCCTGTGCTGTCTGTGAAGTCACCTTCTGAAGCGATTCGGATAATTAATTCCAAAGGAAAACCTTTAGCCGTTTACGTGTTTACTCGAAACAAATCAGTATTCAATGATTTCAAAATGGCTACGTCTAGTGGTGCGATTATGATGAATGATTGTAGTGTACATACTCTTATACCAAATATTCCTTTCGGTGGTATTGGTCACTCCGGAATAGGGAACTATCGTGGTCGTTATTCGATTGAAACATTTTCCCATCGTCGCCCAGTTATTCTCAAGTCAGAAGTCGAATACATAAATAACAAAATCCGTTATTATCCGTATACTGAAAGTGGTCTGAGTTGGTTGCGTTGGAGTTTGAAGAAATCAGATAGAAATGGCTGCCAAATATTATAAAGAATCCATCTATGTTGCTTTTCACATTAACTTTTACTTATAAAATTTTTCACTCATTTTCTAACTTTGTTTTTTTGCAAGAAAAATAAACTGAGCCTAATATTTATAAATATCTTTAATGGAATGCTAATACATTACTTTGAAGTA]
[-] EMBL AI976857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AATTAATTCCAAAGGAAAACCTTTAGCCGTTTACGTGTTTACTCGAAACAAATCAGTATTCAATGATTTCAAAATGGCTACGTCTAGTGGTGCGATTATGATGAATGATTGTAGTGTACATACTCTTATACCAAATATTCCTTTCGGTGGTATTGGTCACTCCGGAATAGGGAACTATCGTGGTCGTTATTCGATTGAAACATTTTCCCATCGTCGCCCAGTTATTCTCAAGTCAGAAGTCGAATACATAAATAACAAAATCCGTTATTATCCGTATACTGAAAGTGGTCTGAGTTGGTTGCGTTGGAGTTTGAAGAAATCAGATAGAAATGGCTGCCAAATATTATAAAGAATCCATCTATGTTGCTTTTCACATTAACTTTTACTTATAAAATTTTTCACTCATTTTCTAACTTTGTTTTTTTGCAAGAAAAATAAACTGAGCCTAATATTTATAAATATCTTTAATGGAATGCTAATACATTACTTTG     ]


>consensus_9997#0 TCAATTCCGAGCCACCTTCGGTTGTTAATTATCCCCAACAACCGCCCATACTCTACTGGA GTCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAAT GTCGGAAGATATCGAAAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTT GAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAA CGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGCGTCGAACTGAAGCTAT TTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTC ATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTAT TCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTT ATCCTTTCAGCCTATAATCGGTGCAATCGCTGCTGGGAATAGTGATCTTCTTAAGCCGTC AGAAATGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAA ACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGGAAACTCA GCGTTTTGACCTTATATTTTACACGGGTGGTACAACCATTGGTCGCGAAGTTTATGTTGC CGCTGCGAAACAACTTACTCCTGTTGTTTTGGAACTTGGAGGGAAATGTCCTGTGTATAT TGATTCGGATGTCAGTTTGGATGTAGCTGTCAAGCGTATTATTTACAGCAAACTTCTGAA TTGTGGACAAATATGTGTTGCTGCCGATTACTTATTATGTCACGAAAAAATACTACCTGT TTTAAAAGAAAGGATTGAAGAAACCATAAAACAGTTTTTGGGCGATGATCCTCAAAAAAG TCCTGATTTTGCGCGCATCATCAATGTCAAGCATTTTCAGCGTCTTACAGGTCTACTGAA ACAAACCAAAGGCAAAGTTATGGTCGGTGGCATGTCAGATGTGAATGACANATATATTGC CCCAACTGTTGTATTTGATGTTGATGAAGAGGATATATTAATGCAAGATGAGATCTTTGG GCCAATACTTCCTGTGCTGTCTGTGAAGTCACCTTCTGAAGCGATTCGGATAATTAATTC CAAAGGAAAACCTTTAGCCGTTTACGTGTTTACTCGAAACAAATCAGTATTCAATGATTT CAAAATGGCTACGTCTAGTGGTGCGATTATGATGAATGATTGTAGTGTACATACTCTTAT ACCAAATATTCCTTTCGGTGGTATTGGTCACTCCGGAATAGGGAACTATCGTGGTCGTTA TTCGATTGAAACATTTTCCCATCGTCGCCCAGTTATTCTCAAGTCAGAAGTCGAATACAT AAATAACAAAATCCGTTATTATCCGTATACTGAAAGTGGTCTGAGTTGGTTGCGTTGGAG TTTGAAGAAATCAGATAGAAATGGCTGCCAAATATTATAAAGAATCCATCTATGTTGCTT TTCACATTAACTTTTACTTATAAAATTTTTCACTCATTTTCTAACTTTGTTTTTTTGCAA GAAAAATAAACTGAGCCTAATATTTATAAATATCTTTAATGGAATGCTAATACATTACTT TGAAGTA



consensusID : consensus_9997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [CTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGGTATCGAAAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTCTAATCGGTGCAATCGCTGCTGGGAATAGTGTTCTTCTTAAGCCGTCAGAAATGACTCCGTATTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGNGAACTCAGCGTTNTGACCTTATATTTTAC]

[+] EMBL CD154522             [CTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGGTATCGAAAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCACAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTCTAATCGGTGCAATCGCTGCTGGGAATAGTGTTCTTCTTAAGCCGTCAGAAATGACTCCGTATTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCTGNGAACTCAGCGTTNTGACCTTATATTTTAC]


>consensus_9997#1 CTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGGTATCGA AAAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTC ACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGT TAAAGCACTAGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCACAGATGTAGA CACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGA GTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATA CGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTCT AATCGGTGCAATCGCTGCTGGGAATAGTGTTCTTCTTAAGCCGTCAGAAATGACTCCGTA TTTAGATAAACACATATGTCAAGTCATTTGTGGAGGTCCCAGTGTATCTAAGATAATTCT GNGAACTCAGCGTTNTGACCTTATATTTTAC



consensusID : consensus_9997#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence
                              [TCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGATATCGAAAAGGTTTGTTGTAAATTTGTTAACTTCTAACTATACAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCAAGAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCC]

[+] EMBL CD179015             [TCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATGTCGGAAGATATCGAAAAGGTTTGTTGTAAATTTGTTAACTTCTAACTATACAGATCACGTCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTGCCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCAAGAGATGTAGACACTTCAGTAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCGTCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTTTTAATAATGAGTCCTTGGAACTTCCCC]


>consensus_9997#2 TCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAATG TCGGAAGATATCGAAAAGGTTTGTTGTAAATTTGTTAACTTCTAACTATACAGATCACGT CTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGTG CCATCCGAAATATTCTCAAGTTGTTCTTGGAGAACGAGGAAAGCATTGTTAAAGCACTAG AGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCAAGAGATGTAGACACTTCAGTA GGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCCCG TCGTCATTCATCACTTTAATGGATACAGTAACTATTCAAAAGCAGCCATACGGTGTGGTT TTAATAATGAGTCCTTGGAACTTCCCC



consensusID : consensus_9997#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence
                              [CCCTTCATTTTATCCTTTCAGCCTCTAATCGGTGCAATCGCTGCTGGGAATAGTGTTCTTCTTAAGCCGTCAGAAATGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAAAGTAAGTAACTGATCAAATTAAAGATTTTCATCGACTGAAGAAAAAAGGAATTATCCTGCACTTAAATTCTATCCCTTAAATTGACATTCTAAAATGAAAGGTTTTGGTCCCTAGAAAATATGAAGGGCGCAGTGTGTGTCACTTTAAACAGATAC]

[+] EMBL CD185545             [CCCTTCATTTTATCCTTTCAGCCTCTAATCGGTGCAATCGCTGCTGGGAATAGTGTTCTTCTTAAGCCGTCAGAAATGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAAAGTAAGTAACTGATCAAATTAAAGATTTTCATCGACTGAAGAAAAAAGGAATTATCCTGCACTTAAATTCTATCCCTTAAATTGACATTCTAAAATGAAAGGTTTTGGTCCCTAGAAAATATGAAGGGCGCAGTGTGTGTCACTTTAAACAGATAC]


>consensus_9997#3 CCCTTCATTTTATCCTTTCAGCCTCTAATCGGTGCAATCGCTGCTGGGAATAGTGTTCTT CTTAAGCCGTCAGAAATGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAG TATTTAGATAAAGTAAGTAACTGATCAAATTAAAGATTTTCATCGACTGAAGAAAAAAGG AATTATCCTGCACTTAAATTCTATCCCTTAAATTGACATTCTAAAATGAAAGGTTTTGGT CCCTAGAAAATATGAAGGGCGCAGTGTGTGTCACTTTAAACAGATAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TCAATTCCGAGCCACCTTCGGTTGTTAATTATCCCCAACAACCGCCCATACTCTACTGGA 60
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ---------------CTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAAT 45
consensus_9997#2      -TCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAAT 59
consensus_9997#0      GTCAATCAAGTCAGACTTCTAAGTATATCACGCCTAGTTATTCCTGTTATCTAGTAAAAT 120
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      GTCGGAAGGTATCGAAAAG-----------------------------------ATCACG 70
consensus_9997#2      GTCGGAAGATATCGAAAAGGTTTGTTGTAAATTTGTTAACTTCTAACTATACAGATCACG 119
consensus_9997#0      GTCGGAAGATATCGAAAAG-----------------------------------ATCACG 145
consensus_9997#3      ---------------------------------------------------CCCTTCATT 9
                                                                             ***  

consensus_9997#1      TCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGT 130
consensus_9997#2      TCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGT 179
consensus_9997#0      TCTGTTTTACGCAAAGGGGTCACTGAAGGCGTTTTGAACACCTTAGACTCACGTAAATGT 205
consensus_9997#3      TTATCCTTTCAGCCTCTAATCGGTGCAATCGCTGCTGGGAATAGTGTTCTTCTTAA---- 65
                      *     ** *         **  ** *  ** *      *     *     * ***    

consensus_9997#1      GCCATCCGAAATATTCTCAAGTTGTTCTTGGA-GAACGAGGAAAGCATTGTTAAAGCACT 189
consensus_9997#2      GCCATCCGAAATATTCTCAAGTTGTTCTTGGA-GAACGAGGAAAGCATTGTTAAAGCACT 238
consensus_9997#0      GCCATCCGAAATATTCTCAAGTTGTTCTTGGA-GAACGAGGAAAGCATTGTTAAAGCACT 264
consensus_9997#3      GCCGTCAGAAATGACTCCGGCATGTTCTCAGCTGATTTCTGAGCTTATCGCTAAGTATTT 125
                      *** ** *****     *    ******  *  **     **    ** * ***     *

consensus_9997#1      AGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCAC-AGATGTAGACACTTCAG 248
consensus_9997#2      AGAGGCAGATCTTCGCAGGTGTCGAACTGAAGCTATTTTCAAGAGATGTAGACACTTCAG 298
consensus_9997#0      AGAGGCAGATCTTCGCAGGCGTCGAACTGAAGCTATTTTCAC-AGATGTAGACACTTCAG 323
consensus_9997#3      AGATAAAGTAAGTAACTGA--TCAAATTAAAG--ATTTTCATCGACTGAAGAAAAA--AG 179
                      ***   **    *  * *   ** ** * ***  *******     ** *** *    **

consensus_9997#1      TAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCC 308
consensus_9997#2      TAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCC 358
consensus_9997#0      TAGGTGAAGCACAAATAATGCTTTCTAATATTGATTCATGGTTGAGGGAGGAGTCGGTCC 383
consensus_9997#3      GAATTATCCTGCACTTAA-ATTCTATCCCTTAAATTGACATTCTAAAATGAAA--GGTTT 236
                       *  *      **  ***   * * *    *  *** *   *  *    * *   ***  

consensus_9997#1      CGTCGTCATTCATCACTTTAATGGATACAGTAACTATT--CAAAAGCAGCCATACGGTGT 366
consensus_9997#2      CGTCGTCATTCATCACTTTAATGGATACAGTAACTATT--CAAAAGCAGCCATACGGTGT 416
consensus_9997#0      CGTCGTCATTCATCACTTTAATGGATACAGTAACTATT--CAAAAGCAGCCATACGGTGT 441
consensus_9997#3      TG--GTCCCTAGAAAATATGAAGGGCGCAGTGTGTGTCACTTTAAACAGATAC------- 287
                       *  ***  *    * * * * **   ****   * *      ** ***  *        

consensus_9997#1      GGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTCTAATCGG 426
consensus_9997#2      GGTTTTAATAATGAGTCCTTGGAACTTCCCC----------------------------- 447
consensus_9997#0      GGTTTTAATAATGAGTCCTTGGAACTTCCCCTTCATTTTATCCTTTCAGCCTATAATCGG 501
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      TGCAATCGCTGCTGGGAATAGTGTTCTTCTTAAGCCGTCAGAAATGACTCCG-------- 478
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGCAATCGCTGCTGGGAATAGTGATCTTCTTAAGCCGTCAGAAATGACTCCGGCATGTTC 561
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ----------------------------TATTTAGATAAACACATATGTCAAGTCATTTG 510
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TCAGCTGATTTCTGAGCTTATCGCTAAGTATTTAGATAAACACATATGTCAAGTCATTTG 621
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      TGGAGGTCCCAGTGTATCTAAGATAATTCTGNGAACTCAGCGTTNTGACCTTATATTTTA 570
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGGAGGTCCCAGTGTATCTAAGATAATTCTGGAAACTCAGCGTTTTGACCTTATATTTTA 681
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      C----------------------------------------------------------- 571
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      CACGGGTGGTACAACCATTGGTCGCGAAGTTTATGTTGCCGCTGCGAAACAACTTACTCC 741
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGTTGTTTTGGAACTTGGAGGGAAATGTCCTGTGTATATTGATTCGGATGTCAGTTTGGA 801
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGTAGCTGTCAAGCGTATTATTTACAGCAAACTTCTGAATTGTGGACAAATATGTGTTGC 861
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGCCGATTACTTATTATGTCACGAAAAAATACTACCTGTTTTAAAAGAAAGGATTGAAGA 921
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      AACCATAAAACAGTTTTTGGGCGATGATCCTCAAAAAAGTCCTGATTTTGCGCGCATCAT 981
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      CAATGTCAAGCATTTTCAGCGTCTTACAGGTCTACTGAAACAAACCAAAGGCAAAGTTAT 1041
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      GGTCGGTGGCATGTCAGATGTGAATGACANATATATTGCCCCAACTGTTGTATTTGATGT 1101
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGATGAAGAGGATATATTAATGCAAGATGAGATCTTTGGGCCAATACTTCCTGTGCTGTC 1161
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGTGAAGTCACCTTCTGAAGCGATTCGGATAATTAATTCCAAAGGAAAACCTTTAGCCGT 1221
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TTACGTGTTTACTCGAAACAAATCAGTATTCAATGATTTCAAAATGGCTACGTCTAGTGG 1281
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGCGATTATGATGAATGATTGTAGTGTACATACTCTTATACCAAATATTCCTTTCGGTGG 1341
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TATTGGTCACTCCGGAATAGGGAACTATCGTGGTCGTTATTCGATTGAAACATTTTCCCA 1401
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TCGTCGCCCAGTTATTCTCAAGTCAGAAGTCGAATACATAAATAACAAAATCCGTTATTA 1461
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TCCGTATACTGAAAGTGGTCTGAGTTGGTTGCGTTGGAGTTTGAAGAAATCAGATAGAAA 1521
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      TGGCTGCCAAATATTATAAAGAATCCATCTATGTTGCTTTTCACATTAACTTTTACTTAT 1581
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ------------------------------------------------------------
consensus_9997#2      ------------------------------------------------------------
consensus_9997#0      AAAATTTTTCACTCATTTTCTAACTTTGTTTTTTTGCAAGAAAAATAAACTGAGCCTAAT 1641
consensus_9997#3      ------------------------------------------------------------
                                                                                  

consensus_9997#1      ----------------------------------------------
consensus_9997#2      ----------------------------------------------
consensus_9997#0      ATTTATAAATATCTTTAATGGAATGCTAATACATTACTTTGAAGTA 1687
consensus_9997#3      ----------------------------------------------
                                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)