These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CACCATACTGGTGCACGGGAAACAGGTGACTCTCGGCCTGTTTGGGCAGGAAGAGGAAGTGATCTCCAACCCGCTGTCGCCGGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCGCTCCCGGCGCCGAGCGGGAGGCCGTTCTCCAGCAGGAGCTGGTCATCCACATCGGATGGATCATCTCCAATAACCCGGAGCTCTTCAGCGGCATGCTGAAGATCTGAGTCGGGTGGATCGTCCAGGCTATGAAACACGAGCTGAAAATCCGAGCTGGGGACATGCCCGCGCAGGACATCCACCAACTGTCTCCCAGCGACATCAAGCAGCTGCTGCTGGACGTCCTGCAGCCCCAACACACTGCCAGGTCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGCAACCGACGCTCTCTGACATGACCATGTATGAGATGAACTTCTCTCTGCTGGTGGAGGACACGCTGAAGAACATCGTCCTGCCCGAGTACAGAC] [+] EMBL BU805195 [CACCATACTGGTGCACGGGAAACAGGTGACTCTCGGCCTGTTTGGGCAGGAAGAGGAAGTGATCTCCAACCCGCTGTCGCCGGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCGCTCCCGGCGCCGAGCGGGAGGCCGTTCTCCAGCAGGAGCTGGTCATCCACATCGGATGGATCATCTCCAATAACCCGGAGCTCTTCAGCGGCATGCTGAAGATCTGAGTCGGGTGGATCGTCCAGGCTATGAAACACGAGCTGAAAATCCGAGCTGGGGACATGCCCGCGCAGGACATCCACCAACTGTCTCCCAGCGACATCAAGCAGCTGCTGCTGGACGTCCTGCAGCCCCAACACACTGCCAGGTCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGCAACCGACGCTCTCTGACATGACCATGTATGAGATGAACTTCTCTCTGCTGGTGGAGGACACGCTGAAGAACATCGTCCTGCCCGAGTACAGAC] consensusID : consensus_1120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [TCCTTTTTTATCTTTAATTGTTTTATCTGCCGCGGGGTGTTTATATCGGAGCATATTATCTGCTTCTGCATCAGCCCATTTCCCCACTGAAATGATTAAAGCTTATCTAATCTCATCTGATCTAATAAGCATCGACTTAGACAATTCCCCGGAGCCCAGAAGCTGGCCACACATGATTTCCTCTCCTTAAAACGGAGGCCAATATTTTCCCTTTTTTAATGTTTCACCTCAGGGCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGGTAATTAGGACCTCCAGTCATGCTGCTTTCAGCACTGTCGGTT] [+] EMBL FR0063575 [TCCTTTTTTATCTTTAATTGTTTTATCTGCCGCGGGGTGTTTATATCGGAGCATATTATCTGCTTCTGCATCAGCCCATTTCCCCACTGAAATGATTAAAGCTTATCTAATCTCATCTGATCTAATAAGCATCGACTTAGACAATTCCCCGGAGCCCAGAAGCTGGCCACACATGATTTCCTCTCCTTAAAACGGAGGCCAATATTTTCCCTTTTTTAATGTTTCACCTCAGGGCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCTGGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGCTGAGACGCACCTCCCACAGGTAATTAGGACCTCCAGTCATGCTGCTTTCAGCACTGTCGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1120#0 CACCATACTGGTGCACGGGAAACAGGTGACTCTCGGCCTGTTTGGGCAGGAAGAGGAAGT 60 consensus_1120#1 ------------------------------------------------------------ consensus_1120#0 GATCTCCAACCCGCTGTCGCCGGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCGC 120 consensus_1120#1 -------------------------------------------------------TCCTT 5 *** consensus_1120#0 TCCCGGCGCCGAGCGGGAGGCCGTTCTCCAGCAGGAGCTGGTCAT-CCACATCGGATGGA 179 consensus_1120#1 TTTTATCTTTAATTG------TTTTATCTGCCGCGGGGTGTTTATATCGGAGCATATTAT 59 * * * * ** ** * * * ** * ** * * * ** consensus_1120#0 TCATCTC--CAATAACCCGGAGCTCTTCAGCGGCATGCTGAAGATCTGAGTCGGGTGGAT 237 consensus_1120#1 CTGCTTCTGCATCAGCCC--ATTTCCCCACTGAAATGATTAAAGCTTA--TCTAATC--T 113 ** ** * *** * ** ** * *** * ** * ** * * consensus_1120#0 CGTCCAGGCTATGAAACACGAGCTGAAAATCCGAGCTGGGGACATGCCCGCGCAGGACAT 297 consensus_1120#1 CATCTGATCTAATAAGCATCGACTTAGACAATTCCCCGGAG-------CCCAGAAGCTGG 166 * ** *** ** ** ** * * * ** * * * * * consensus_1120#0 CCACCAACTGTCTCCCAGCGACATCAAGCAGCTGCTGCTGGACGTCCTGCAGCCCCAACA 357 consensus_1120#1 CCACACATGATTTCCT--CTCCTTAAAACGGAGGCCAATATTTTCCCTTTTTTAATGTTT 224 **** * * *** * * * ** * * ** * *** consensus_1120#0 CACTGCCAGGTCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCT 417 consensus_1120#1 CACC-TCAGGGCTTGGCTGAACAGGAGGAAGATTGACGGCTCTCTGAACAGAACCCCGCT 283 *** **** ************************************************* consensus_1120#0 GGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGC 477 consensus_1120#1 GGGATTCTACGACCGGGTGTGGCAGATCCTGGAAAGGACCCCCAACGGTATTGTGGTGGC 343 ************************************************************ consensus_1120#0 TGAGACGCACCTCCCACAG-CAACCGACGCTCTCTGACATGACCATGTATGAGATGAACT 536 consensus_1120#1 TGAGACGCACCTCCCACAGGTAATTAGGACCTCCAGTCATG-CTGCTTTCAGCACTGTCG 402 ******************* ** * * * **** * * * * consensus_1120#0 TCTCTCTGCTGGTGGAGGACACGCTGAAGAACATCGTCCTGCCCGAGTACAGAC 590 consensus_1120#1 GTT--------------------------------------------------- 405 * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |