These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [ATGGCGGTCAAGGCTGATCTCCTTCCAGTAGTTTTTGGCCTTTGAGTCTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGTTGCCTTTCAGCTGTTCGACAAGACTGGCACTGGGAACATCTCCTTTGAGAATGTACGAGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTTCAACTGGGACTGTGAGTTCATCCGGCTACACTTTGGCCATGAAAGAAACAAGAACCTGAGCTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTCAGAACATGCACGTCAAGCTTTTGCACAAAAAGACAAAAGCAAAAGCGGCACCATCACCGCACTGGACTTCAGCGACATCATGGCCACCATCAGACATCACATGCTGACTCCCTTTGTAGAGGAGAACCTGGTCTCGGCTGCAGGAGGCAGCACCTCCCACATGGTGAGCTTCTCGTACTTCAACGCCTTCAACGCCCTGCTCAACAACATGGAGCTGATCCGCAAGATTTACAGCACCATCGCAGGCACGCACAGAGACGCGCTGGTCACCAAAGAGGAATTTGTTAACACTGCAAATAAATTTGGCCAGATTACTCCGATGGAG] [+] EMBL BU805624 [ATGGCGGTCAAGGCTGATCTCCTTCCAGTAGTTTTTGGCCTTTGAGTCTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGTTGCCTTTCAGCTGTTCGACAAGACTGGCACTGGGAACATCTCCTTTGAGAATGTACGAGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTTCAACTGGGACTGTGAGTTCATCCGGCTACACTTTGGCCATGAAAGAAACAAGAACCTGAGCTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTCAGAACATGCACGTCAAGCTTTTGCACAAAAAGACAAAAGCAAAAGCGGCACCATCACCGCACTGGACTTCAGCGACATCATGGCCACCATCAGACATCACATGCTGACTCCCTTTGTAGAGGAGAACCTGGTCTCGGCTGCAGGAGGCAGCACCTCCCACATGGTGAGCTTCTCGTACTTCAACGCCTTCAACGCCCTGCTCAACAACATGGAGCTGATCCGCAAGATTTACAGCACCATCGCAGGCACGCACAGAGACGCGCTGGTCACCAAAGAGGAATTTGTTAACACTGCAAATAAATTTGGCCAGATTACTCCGATGGAG] consensusID : consensus_1165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [GTCAAGCCACAAAAAGAGCCGACCCTCATGAATTGAAGGCTATTTTCCTTAAGTATGCCAGCGTGGTGGATGATGGAGAGCATTACATGACTCCCAGGGATTTTGTCCAGAGTTACCTGGGTTTACATGCACAGCCTCAGGTTAATCCCAAAACGGTGGATCTGCTAGCTGGCGTGGCTGATACGACTAAAGATGGGCTGATCTCCTTCCAGGAGTTTTTGGCCTTTGAGACTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGGTGCCTTTCAGCTGTTCGACAAGAC] [+] EMBL FR0064064 [GTCAAGCCACAAAAAGAGCCGACCCTCATGAATTGAAGGCTATTTTCCTTAAGTATGCCAGCGTGGTGGATGATGGAGAGCATTACATGACTCCCAGGGATTTTGTCCAGAGTTACCTGGGTTTACATGCACAGCCTCAGGTTAATCCCAAAACGGTGGATCTGCTAGCTGGCGTGGCTGATACGACTAAAGATGGGCTGATCTCCTTCCAGGAGTTTTTGGCCTTTGAGACTGTCCTGTGTGCCCCGGACGCCCTGTTCATAGGTGCCTTTCAGCTGTTCGACAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1165#0 ATGGCGGTCAAGGCTGATCTCCTTCCAGTAGTTTTTGGCCTTTGAGTCTGTCCTGTGTGC 60 consensus_1165#1 ------------------------------------------------------------ consensus_1165#0 CCCGGACGCCCTGTTCATAGTTGCCTTTCAGCTGTTCGACAAGACTGGCACTGGGAACAT 120 consensus_1165#1 ------------------------------------------------------------ consensus_1165#0 CTCCTTTGAGAATGTACGAGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTT 180 consensus_1165#1 -----------------------------GTCAAGCCACAA--AAAGAGCCGACCCTCAT 29 * ** ***** * * * * * * * consensus_1165#0 CAACTGGGACTGTGAGTTCATCCGGCTACACTTTGGCCATGAAAGAAACAAGAACCTGAG 240 consensus_1165#1 GAATTGAAG--GCTATTTTCCTTAAGTATGCCAGCGTGGTGGATGATG-GAGAGC----A 82 ** ** * * ** ** * * ** * ** *** * consensus_1165#0 CTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTCAGAACATGCACGTCAAGCTTT 300 consensus_1165#1 TTACATGACTCCCAGGGATTTTGTCCAG-AGTTAC---CTGGGTTTACATGCACAGCCTC 138 **** ** * *** * *** ** * * * * * ** * *** * consensus_1165#0 TGCACAAAAAGACAAAAGCAAAAGCGGCACCATCACCGCACTGGACTTCAGCGACATCAT 360 consensus_1165#1 ---------AGGTTAATCCCAAAACGG--------------TGGATCTGCTAGCTGGCGT 175 ** ** * *** *** **** * * * * consensus_1165#0 GGCCACCATCAGACATCACATGCTGACTCCCTTTGTAGAGGAGAACCTGGTCTCGGCTGC 420 consensus_1165#1 GGCTGATACGACTAAAGATGGGCTGATCTCCTTCC---AGGAGTTTTTGGCCTTTG---- 228 *** * * * * ***** **** ***** *** ** * consensus_1165#0 AGGAGGCAGCACCTCCCACATGGTGAGCTTCTCGTACTTCAACGCCTTCAACGCCCTGCT 480 consensus_1165#1 ---AGACTG--TCCTGTGTGCCCCGGACGCCCTGTTCATAGGTGCCTTTCAG---CTGTT 280 ** * * * * * * ** * * ***** * *** * consensus_1165#0 CAACAACATGGAGCTGATCCGCAAGATTTACAGCACCATCGCAGGCACGCACAGAGACGC 540 consensus_1165#1 CGACAAGAC--------------------------------------------------- 289 * **** * consensus_1165#0 GCTGGTCACCAAAGAGGAATTTGTTAACACTGCAAATAAATTTGGCCAGATTACTCCGAT 600 consensus_1165#1 ------------------------------------------------------------ consensus_1165#0 GGAG 604 consensus_1165#1 ---- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |