These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [AACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGCATGTCTGCAACGTAAACACGTTTCCTACGTAGATGAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGGCGCCCTCTTCAGGGAGGGGGACTGTTGGATTTGCATGGAACTTATGTCTACCTCATTAGACAAATTCTACAAATATGTA] [+] EMBL BU807672 [AACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGCATGTCTGCAACGTAAACACGTTTCCTACGTAGATGAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGGCGCCCTCTTCAGGGAGGGGGACTGTTGGATTTGCATGGAACTTATGTCTACCTCATTAGACAAATTCTACAAATATGTA] consensusID : consensus_1179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [CGACTCCCAGTCCCGATAGTAACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGCGGCC] [+] EMBL BU805720 [CGACTCCCAGTCCCGATAGTAACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTACTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGGTAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCTGCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACACAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGCAGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGATGGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGAGAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCCCTACATCGTCCAGTTCTACGCGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1179#0 --------------------AACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTA 40 consensus_1179#1 CGACTCCCAGTCCCGATAGTAACTCGACTAGCTCCAATAACAGCAGCATTTTAAGGTCTA 60 **************************************** consensus_1179#0 CTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAGCATGTCTGCAACGTA 100 consensus_1179#1 CTTCGCATCATTTTCACCAGCAGACGCAGAGCAGCAACATGCAAG--------------- 105 ********************************************* consensus_1179#0 AACACGTTTCCTACGTAGATGAGAAACCAAAACCTACTGGAGATGTCAAAATGAAACAGG 160 consensus_1179#1 -----------------------AAACCAAAACCTACTGGAGATGTCAAAATGAAACAGG 142 ************************************* consensus_1179#0 TAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCT 220 consensus_1179#1 TAAACGTAAAGCTCTCAAGCTGAATTTTGCCAACCCCCCGGTGAAACCCACATCGAGGCT 202 ************************************************************ consensus_1179#0 GCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACA 280 consensus_1179#1 GCCGCCCATTCCAACTCCCCCCTCTTTCCAAAACCCACACATAGAACGCCTGCGTACACA 262 ************************************************************ consensus_1179#0 CAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGC 340 consensus_1179#1 CAGCATCGAGTCGTCAGGAAAGTTGAAGATTTCTCCAGAGCATCACTGTGACTTCACAGC 322 ************************************************************ consensus_1179#0 AGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGAT 400 consensus_1179#1 AGAAGACCTGAAAGACCTCGGGGAGATTGGTCGTGGGGCTTATGGCTCCGTCAACAAGAT 382 ************************************************************ consensus_1179#0 GGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGA 460 consensus_1179#1 GGTTCACAAACCCACAGGCCAGATCATGGCTGTAAAGAGGATTCGATCCACTGTGGATGA 442 ************************************************************ consensus_1179#0 GAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCC 520 consensus_1179#1 GAAGGAGCAGAAGCAGCTACTGATGGATCTTGATGTGGTGATGAGGAGCAGTGACTGCCC 502 ************************************************************ consensus_1179#0 CTACATCGTCCAGTTCTACGGCGCCCTCTTCAGGGAGGGGGACTGTTGGATTTGCATGGA 580 consensus_1179#1 CTACATCGTCCAGTTCTACGCGGCC----------------------------------- 527 ******************** *** consensus_1179#0 ACTTATGTCTACCTCATTAGACAAATTCTACAAATATGTA 620 consensus_1179#1 ---------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |