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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[AAAGGAAATCTGTTATATAACCCGAAGTAAAAGGATTCTGCAAAAACAAAGGAAATACGGAACGATCGGGGACATACTTTGTGTTTCTGTGCAACTCATCCAACACTTTGGTCGGCCTGCGCTCGCACGTCAAACATGGCCGCCGACAAGTCTCCCTACGCTGCTCTCGACGGGGGACCTTCTCCTCTTTCGCTCCCCGGACAATCGGCATTTCCTGTCTCTTTTGACATGAACGGGCCAGGCTCCAACATGTTCGGAGGCCCCGCTCCTGGAGGTTTCCCTGCTCCCGGGGGCGTCCCGTTCCCCCCACCGACAGCTTTTGGTCTCGGTGGCCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGAAGCTTTTGGTCCCGGTGGCCCTGGAGCTTTTGGTCCCGGTGGTCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGAAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGA]
[+] EMBL BU807277 [AAAGGAAATCTGTTATATAACCCGAAGTAAAAGGATTCTGCAAAAACAAAGGAAATACGGAACGATCGGGGACATACTTTGTGTTTCTGTGCAACTCATCCAACACTTTGGTCGGCCTGCGCTCGCACGTCAAACATGGCCGCCGACAAGTCTCCCTACGCTGCTCTCGACGGGGGACCTTCTCCTCTTTCGCTCCCCGGACAATCGGCATTTCCTGTCTCTTTTGACATGAACGGGCCAGGCTCCAACATGTTCGGAGGCCCCGCTCCTGGAGGTTTCCCTGCTCCCGGGGGCGTCCCGTTCCCCCCACCGACAGCTTTTGGTCTCGGTGGCCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGAAGCTTTTGGTCCCGGTGGCCCTGGAGCTTTTGGTCCCGGTGGTCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGAAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGA]
consensusID : consensus_1217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[AATCTGTTATAAAACCCGAAGTAAAAGGATTCTGCAAAAACAAAGGAAATACGGAACGATCGGGGACATACTTTGTGTTTCTGTGCAACGTGAGTACTTTTGATATAACAATCTTGACGTTGTTGTATCGAGCTGGTCATATGTCGAGTAATTTTTTGGGGTTTAAAAAACGTACGGCTGTGATTGGGACACCACGACAATGTCATACCTCGATTGTTCTGGCATACAGAATTAAGTCATCCAACACTTTGGTCGGCCTGCGCTCGCACGTCAAACATGGCCGCCGACAAGTCTCCCTACGCTGCTCTCGACGGGGGACCTTCTCCTCTTTCGCTCCCCGGACAATCGGCATTTCCTGTCGCATTTGACATGAACGGGCCAGGCTCCAACATGTTCGGAGGCCCCGCTCCTGGAGGTTTCCCTGCTCCCGGGGGCGTCCCGTTCCCCCCACCGACAGCTTTTGGTCTCGGTGGCCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGA]
[+] EMBL BU806014 [AATCTGTTATAAAACCCGAAGTAAAAGGATTCTGCAAAAACAAAGGAAATACGGAACGATCGGGGACATACTTTGTGTTTCTGTGCAACGTGAGTACTTTTGATATAACAATCTTGACGTTGTTGTATCGAGCTGGTCATATGTCGAGTAATTTTTTGGGGTTTAAAAAACGTACGGCTGTGATTGGGACACCACGACAATGTCATACCTCGATTGTTCTGGCATACAGAATTAAGTCATCCAACACTTTGGTCGGCCTGCGCTCGCACGTCAAACATGGCCGCCGACAAGTCTCCCTACGCTGCTCTCGACGGGGGACCTTCTCCTCTTTCGCTCCCCGGACAATCGGCATTTCCTGTCGCATTTGACATGAACGGGCCAGGCTCCAACATGTTCGGAGGCCCCGCTCCTGGAGGTTTCCCTGCTCCCGGGGGCGTCCCGTTCCCCCCACCGACAGCTTTTGGTCTCGGTGGCCCTGGAGCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1217#0 ------------------------------------------------------------
consensus_1217#1 AATCTGTTATAAAACCCGAAGTAAAAGGATTCTGCAAAAACAAAGGAAATACGGAACGAT 60
consensus_1217#0 ------------------------------------------------------------
consensus_1217#1 CGGGGACATACTTTGTGTTTCTGTGCAACGTGAGTACTTTTGATATAACAATCTTGACGT 120
consensus_1217#0 -----------AAAGGAAATCTGTTATATAACCC---GAAGTAAAAGGATTCTGCAAAAA 46
consensus_1217#1 TGTTGTATCGAGCTGGTCATATGTCGAGTAATTTTTTGGGGTTTAAAAAACGTACGGCTG 180
** ** *** *** * ** ** * * *
consensus_1217#0 CAAAGGAAATACGG-AACGATCGGGGACATACTTTGTGTTTCTGTGCA------ACTCAT 99
consensus_1217#1 TGATTGGGACACCACGACAATGTCATACCTCGATTGTTCTGGCATACAGAATTAAGTCAT 240
* * * ** ** ** ** * **** * * ** * ****
consensus_1217#0 CCAACACTTTGGTCGGCCTGCGCTCGCACGTCAAACATGGCCGCCGACAAGTCTCCCTAC 159
consensus_1217#1 CCAACACTTTGGTCGGCCTGCGCTCGCACGTCAAACATGGCCGCCGACAAGTCTCCCTAC 300
************************************************************
consensus_1217#0 GCTGCTCTCGACGGGGGACCTTCTCCTCTTTCGCTCCCCGGACAATCGGCATTTCCTGTC 219
consensus_1217#1 GCTGCTCTCGACGGGGGACCTTCTCCTCTTTCGCTCCCCGGACAATCGGCATTTCCTGTC 360
************************************************************
consensus_1217#0 TCTTTTGACATGAACGGGCCAGGCTCCAACATGTTCGGAGGCCCCGCTCCTGGAGGTTTC 279
consensus_1217#1 GCATTTGACATGAACGGGCCAGGCTCCAACATGTTCGGAGGCCCCGCTCCTGGAGGTTTC 420
* *********************************************************
consensus_1217#0 CCTGCTCCCGGGGGCGTCCCGTTCCCCCCACCGACAGCTTTTGGTCTCGGTGGCCCTGGA 339
consensus_1217#1 CCTGCTCCCGGGGGCGTCCCGTTCCCCCCACCGACAGCTTTTGGTCTCGGTGGCCCTGGA 480
************************************************************
consensus_1217#0 GCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGAAGCTTTTGGTCCC 399
consensus_1217#1 GCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGA------------- 527
***********************************************
consensus_1217#0 GGTGGCCCTGGAGCTTTTGGTCCCGGTGGTCCTGGAGCTTTTGGTCCCGGTGCCCCTGGA 459
consensus_1217#1 ------------------------------------------------------------
consensus_1217#0 GCTTTTGGTCCCGGTGCCCCTGGAGCTTTTGGTCCCGGTGGTCCTGAAGCTTTTGGTCCC 519
consensus_1217#1 ------------------------------------------------------------
consensus_1217#0 GGTGCCCCTGGAGCTTTTGGA 540
consensus_1217#1 ---------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |