These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [ACTGTTTGTCCTTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCTTCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATCTGGAGCTGCTCATCTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA] [+] EMBL FR0058599 [ACTGTTTGTCCTTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCTTCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATCTGGAGCTGCTCATCTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA] consensusID : consensus_1262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCTCCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA] [+] EMBL CA846287 [CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCTGCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCAGGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTACCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAACAGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCACCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCTGTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCTCCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1262#0 --------ACTGTTT---GTCC--TTGTAGGAGGATGAAGCTGAGACCCGGTTCACTGCT 47 consensus_1262#1 CATAATTGGCTCTTTAAAGACCAACAACTGGAGGATGAAGCTCATACCCGGTTCACTGCT 60 ** *** * ** ************* * *************** consensus_1262#0 GCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCA 107 consensus_1262#1 GCTCATCTCAGTATGGGTCGGGGTGTGGTCGGTTCCTATCGAGCGCAATGATGTTCAGCA 120 ************************************************************ consensus_1262#0 GGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGTGA 167 consensus_1262#1 GGAGGCTAAAGAAGAGGTGCAGGAGGAGACTGAAGACACCGGGCTGTACTACGACCGGTA 180 ********************************************************* * consensus_1262#0 CCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAAC 227 consensus_1262#1 CCTCAGAGAGGTGATCGAGGTTCTGGAGACGGACCCTCATTTCAGAGAGAAACTGCAAAC 240 ************************************************************ consensus_1262#0 AGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCA 287 consensus_1262#1 AGCAAATACAGAAGACATCAAGAACGGACATCTGGCAAAAGAACTGGACCTGGTGAGTCA 300 ************************************************************ consensus_1262#0 CCACGTGAGGACGCGGCTTGATGAGCTGAAGCGCCAGGAGGGTTCTCGTCTCAGGATGCT 347 consensus_1262#1 CCACGTGAGGACGCGGCTGGATGAGCTGAAGCGCCAGGAGGTTTCTCGTCTCAGGATGCT 360 ****************** ********************** ****************** consensus_1262#0 GTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTTCCT 407 consensus_1262#1 GTTCAAGGCCAAACTGGACAGCACCAACATACAGACTCAGCAGATGGACCACGCCTCCCT 420 ******************************************************** *** consensus_1262#0 TCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAAGCCCAAAGATC 467 consensus_1262#1 CCTGAAGCAGTTTGAACATCTGGATCCTCACAATCAAAACACATTTGAA----------- 469 ************************************************ consensus_1262#0 TGGAGCTGCTCATCTCCACGGCCACCAAAGATCTTGGAGACTACGATGCTGACCGA 523 consensus_1262#1 -------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |