These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GTCTGTTGAACGGCAGCACAAGGAGCCGAAGAAAGAAGCGACAGCGGGATGAATTCAACAGCGGACAGTGAGTTAAAACATTAGGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCATCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCGGGGCTACCTGTCGGTGTCGGAGAGCGGGGATAAGGTGGCGGTGGAATGGGAAGGAGACAGGGTGGTGCTGGAAAGCCACCTGTCGGAGAAGGGTCGAGGTATGGAGCTGTCC] [+] EMBL BU806394 [GTCTGTTGAACGGCAGCACAAGGAGCCGAAGAAAGAAGCGACAGCGGGATGAATTCAACAGCGGACAGTGAGTTAAAACATTAGGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCATCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCGGGGCTACCTGTCGGTGTCGGAGAGCGGGGATAAGGTGGCGGTGGAATGGGAAGGAGACAGGGTGGTGCTGGAAAGCCACCTGTCGGAGAAGGGTCGAGGTATGGAGCTGTCC] consensusID : consensus_1272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GCGATCTTGTAGCCTTCCAGGTTTACTGTGCTGTGTAATAAATGAAATTCAAATATTTCCATTTAACTAGTTAAATAGGATTCATTATAATAACCGGACTAACCATTAGCTTCAACAAGCCTGTGTTTATCTGCCCCCAGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCTTCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCG] [+] EMBL BU807128 [GCGATCTTGTAGCCTTCCAGGTTTACTGTGCTGTGTAATAAATGAAATTCAAATATTTCCATTTAACTAGTTAAATAGGATTCATTATAATAACCGGACTAACCATTAGCTTCAACAAGCCTGTGTTTATCTGCCCCCAGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCAGCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCTTCTCTGTGGGAGGCCTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAGCCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGCTCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCCGACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGCACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGCAGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1272#0 --------------------------------------------------------GTCT 4 consensus_1272#1 GCGATCTTGTAGCCTTCCAGGTTTACTGTGCTGTGTAATAAATGAAATTCAAATATTTCC 60 ** consensus_1272#0 GTTGAACGGCAGCACAAGGAGCCGAAGAAAGAAGCG-ACAGCGGGATGAATTCAACAGCG 63 consensus_1272#1 ATTTAACTAGTTAAATAGGATTCATTATAATAACCGGACTAACCATTAGCTTCAACAA-- 118 ** *** * **** * ** ** ** ** * ******* consensus_1272#0 GACAGTGAGTTAAAACATTAGGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCA 123 consensus_1272#1 GCCTGTGTTTATCTGCCCCCAGGTCACACCAGCCCTCCGTCCTCCATGCCAGCTTCACCA 178 * * *** * * *************************************** consensus_1272#0 GCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCATCTCTGTGGGAGGC 183 consensus_1272#1 GCTTCACCTCGACAGGACCAGAATGAGCCTATGAGCAACCTGCGCTTCTCTGTGGGAGGC 238 ********************************************* ************** consensus_1272#0 CTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAG 243 consensus_1272#1 CTCCCCCTGCTGGCTTCCATGGGCAACACCACCGACCCCCGTTTCCGCCTCAAGTGGAAG 298 ************************************************************ consensus_1272#0 CCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGC 303 consensus_1272#1 CCCATCGTGCTCGTGGCCTTGTCCCTGACTTTGCTCCTGATGCTGTTCATGCACATGAGC 358 ************************************************************ consensus_1272#0 TCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCC 363 consensus_1272#1 TCGGGCACGCAGTCCCATTCGTACGGCCGACCCAGCTCCAGAGTCGGAGACGCCGACCCC 418 ************************************************************ consensus_1272#0 GACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGC 423 consensus_1272#1 GACGCCACGGACTCCCTCTCACAGTACAATGACACCTACCCGCTCAGCTCACCCGAACGC 478 ************************************************************ consensus_1272#0 ACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGC 483 consensus_1272#1 ACCCCAGAGGGCACCCGCTACCGCATCGCCGTCATCGCCGACCTGGACACCAGCTCTAGC 538 ************************************************************ consensus_1272#0 AGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCGGGGCTACCTGTCGGTGTCGGAG 543 consensus_1272#1 AGCGACAAGAAGCTGACGTGGTTCAGCTACATGCGCCG---------------------- 576 ************************************** consensus_1272#0 AGCGGGGATAAGGTGGCGGTGGAATGGGAAGGAGACAGGGTGGTGCTGGAAAGCCACCTG 603 consensus_1272#1 ------------------------------------------------------------ consensus_1272#0 TCGGAGAAGGGTCGAGGTATGGAGCTGTCC 633 consensus_1272#1 ------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |