These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CTACCTGGCGGGTCTGTCGGAACTGGGACAGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGGCAGGGTCCACCCCCCCAGGAACAACAGAGGAGCACCTCCACTATGCCAAGAAGCTGTACGACTCAGCCTTCCACCCCGACACGGGAGACCGCATGAACCTCATCGGCCGCATGTCCTTCCAGGTCCCTGGAGGCATGGCCATCACCGGCTTCATGCTGCAGTTCTACAGGACAGTTCCTGCTGTGGTGTTCTGGCAGTGGGTGAATCAGTCCTTCAACGCGCTGGTCAACTACACCAACCGGAACGCCGCTTCCCCAATCACCCCCAAGCAAATAGGAGTGGCCTATATCACAGCCACCAGCACGGCGTTGGCAACAGCGGTGGGACTCAACCTCTACACAAAGAAAGCTCCT] [+] EMBL BU806538 [CTACCTGGCGGGTCTGTCGGAACTGGGACAGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGGCAGGGTCCACCCCCCCAGGAACAACAGAGGAGCACCTCCACTATGCCAAGAAGCTGTACGACTCAGCCTTCCACCCCGACACGGGAGACCGCATGAACCTCATCGGCCGCATGTCCTTCCAGGTCCCTGGAGGCATGGCCATCACCGGCTTCATGCTGCAGTTCTACAGGACAGTTCCTGCTGTGGTGTTCTGGCAGTGGGTGAATCAGTCCTTCAACGCGCTGGTCAACTACACCAACCGGAACGCCGCTTCCCCAATCACCCCCAAGCAAATAGGAGTGGCCTATATCACAGCCACCAGCACGGCGTTGGCAACAGCGGTGGGACTCAACCTCTACACAAAGAAAGCTCCT] consensusID : consensus_1284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GTGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGTAAGGGAGGGTTTTCCCTCCGTGAACGGCTTCTTTCCACCATCGATTCCTCCTCCACCACCGCTGGGTTCCTCCTGATGCCAAAGTGAAGCTGGAGGCCACCAAGGGCTTTACAGATCTGGGAA] [+] EMBL FR0059088 [GTGGGTGGATTCGGGGCGCATCAAAGGATCACCTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCATGGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACGACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCTGGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGTAAGGGAGGGTTTTCCCTCCGTGAACGGCTTCTTTCCACCATCGATTCCTCCTCCACCACCGCTGGGTTCCTCCTGATGCCAAAGTGAAGCTGGAGGCCACCAAGGGCTTTACAGATCTGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1284#0 CTACCTGGCGGGTCTGTCGGAACTGGGACAGGGTGGATTCGGGGCGCATCAAAGGATCAC 60 consensus_1284#1 ----------------------------GTGGGTGGATTCGGGGCGCATCAAAGGATCAC 32 ****************************** consensus_1284#0 CTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCAT 120 consensus_1284#1 CTCCTGCACACCGGAACCGTTTATGCCTTAAAAGCTGCGCTGCCTTCTGAAAACCACCAT 92 ************************************************************ consensus_1284#0 GGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACG 180 consensus_1284#1 GGCTTTGAGCTCATTCGACATCGACGCGCCCAGATGGGATCAGACGACGTTCATGGGACG 152 ************************************************************ consensus_1284#0 ACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCT 240 consensus_1284#1 ACTAAAACACTTCTTTAACATCACAGACCCTCGAACGGCGCTCTTACCTGACGCACGCCT 212 ************************************************************ consensus_1284#0 GGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGGCAGGGTCCACCCCCCCAGGAACAAC 300 consensus_1284#1 GGACGAAGCCAAAGCTTTGGTAGAAAGCTGCAGGTAAGGGAGGGTTTTCCCTCCGTGAAC 272 ********************************** **** *** *** consensus_1284#0 AGAGGAGCACCTCCACTATGCCAAGAAGCTGTACGACTCAGCCTTCCACCCCGACACGGG 360 consensus_1284#1 ---GGCTTCTTTCCACCATCGATTCCTCCTCCACCACCGCTGGGTTCCTCCTGATGCCAA 329 ** ***** ** ** ** ** * * ** ** * consensus_1284#0 AGACCGCATGAACCTCATCGGCCGCATGTCCTTCCAGGTCCCTGGAGGCATGGCCATCAC 420 consensus_1284#1 AGTGAAGCTGGAGGCCACCA-----AGGGCTTTACAGATCTGGGAA-------------- 370 ** ** * ** * * * * ** *** ** * * consensus_1284#0 CGGCTTCATGCTGCAGTTCTACAGGACAGTTCCTGCTGTGGTGTTCTGGCAGTGGGTGAA 480 consensus_1284#1 ------------------------------------------------------------ consensus_1284#0 TCAGTCCTTCAACGCGCTGGTCAACTACACCAACCGGAACGCCGCTTCCCCAATCACCCC 540 consensus_1284#1 ------------------------------------------------------------ consensus_1284#0 CAAGCAAATAGGAGTGGCCTATATCACAGCCACCAGCACGGCGTTGGCAACAGCGGTGGG 600 consensus_1284#1 ------------------------------------------------------------ consensus_1284#0 ACTCAACCTCTACACAAAGAAAGCTCCT 628 consensus_1284#1 ---------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |