These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 962 fasta sequence [GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTGTGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAACCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACCACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTCATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTTTCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAGCTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCCTTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTCCACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGACTCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTTAC] [+] EMBL AF269222 [GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTGTGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAACCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACCACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTCATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTTTCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAGCTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCCTTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTCCACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGACTCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTTAC] consensusID : consensus_13#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTGCTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAGGCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT] [+] EMBL CA846736 [ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTGCTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAGGCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13#0 GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTG 60 consensus_13#1 ------------------------------------------------------------ consensus_13#0 TGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAA 120 consensus_13#1 ------------------------------------------------------------ consensus_13#0 CCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACC 180 consensus_13#1 ------------------------------------------------------------ consensus_13#0 ACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTC 240 consensus_13#1 ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAA--------ACAACCCATTTC 52 ********* ** ************************ * * **** *** consensus_13#0 ATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTT 300 consensus_13#1 ---TTAAATTGCTTCTTCGG-GCCAAGCAGAAAGCTTCAGA----TCCACAGAGAATTTC 104 * * * *** ** * *** **** * *** * * **** ** consensus_13#0 TCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTG 360 consensus_13#1 TGCTTT--------CATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTG 156 * ** * ** * ** **** **************************** consensus_13#0 TCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAG 420 consensus_13#1 TCAGACTCTGCAGTGTACTACTGTGCTCTGAG-------GCCCACAGTGACAGGAAGCAG 209 ******************************** **** ** * ** ** consensus_13#0 CTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCC 480 consensus_13#1 CAGAAGTGCGCACTAAAACC--------TCCACAGTAAGGCCACACTGTATCAGCGGCCG 261 * * * * * * * * * **** * * * *** ** * * * consensus_13#0 TTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTC 540 consensus_13#1 CT--AGAGGGCGACACACAG---CGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTT 316 * * * * ** *** * * * * **** ** ** * * ** ** consensus_13#0 CACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGAT----CTCTCA 596 consensus_13#1 CTTCATCTTGAGAACTG-ATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCA 375 * ** *** ***** * * * *** **** *** * ** consensus_13#0 GGACTCGCTCTTTAACCAGGT-GGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCT 655 consensus_13#1 AGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT------------------ 417 *** * *** * ** * ** * * * * consensus_13#0 GTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGC 715 consensus_13#1 ------------------------------------------------------------ consensus_13#0 TGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGA 775 consensus_13#1 ------------------------------------------------------------ consensus_13#0 TCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCA 835 consensus_13#1 ------------------------------------------------------------ consensus_13#0 GAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAA 895 consensus_13#1 ------------------------------------------------------------ consensus_13#0 TATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAAC 955 consensus_13#1 ------------------------------------------------------------ consensus_13#0 CAGTTAC 962 consensus_13#1 ------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |