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Takifugu rubripes
cluster # 13 cluster # 13       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13#0 length = 962 sequences # 1  
consensus_13#1 length = 417 sequences # 1  

consensusID : consensus_13#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 962
fasta sequence
                              [GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTGTGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAACCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACCACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTCATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTTTCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAGCTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCCTTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTCCACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGACTCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTTAC]

[+] EMBL AF269222             [GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTGTGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAACCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACCACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTCATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTTTCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAGCTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCCTTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTCCACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGACTCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTTAC]


>consensus_13#0 GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTG TGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAA CCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACC ACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTC ATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTT TCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTG TCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAG CTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCC TTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTC CACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGATCTCTCAGGAC TCGCTCTTTAACCAGGTGGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCTGTCCT GAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGCTGGTG AACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGATCTTA AATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCAGAGCT GGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAATATTT CAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAACCAGTT AC



consensusID : consensus_13#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence
                              [ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTGCTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAGGCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT]

[+] EMBL CA846736             [ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTGCTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGTGCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAGGCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT]


>consensus_13#1 ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAAACAACCCATTTCTTAAATTG CTTCTTCGGGCCAAGCAGAAAGCTTCAGATCCACAGAGAATTTCTGCTTTCATCAATAAG ACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTGTCAGACTCTGCAGTGTACTACTGT GCTCTGAGGCCCACAGTGACAGGAAGCAGCAGAAGTGCGCACTAAAACCTCCACAGTAAG GCCACACTGTATCAGCGGCCGCTAGAGGGCGACACACAGCGTCTCTTCCTGTCAGGAGAC GTGATGACAAAGTTTTCTTCATCTTGAGAACTGATGAGAGAAATCAAGCCTGCAGCACAG ATGAAGAGGCCTCCAAGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13#0      GAACACCAGACAGTTTCTCCTGCTGCTTTGGAGCTTCTTGCAGAGATGGAACCTTGGCTG 60
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      TGGATTCTTCTGGCTGCTCTTTGCTTTGAGTGTCGAGGAGAAGACAAAGTGATGCAGCAA 120
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      CCAGAAGATGTTGTTGCTGCTGAAGGTGACACTGTTACACTGGACTGTACTTTTCAGACC 180
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      ACCGACACAAACCTGTATTTGTTCTGGTACAAACAGGAGGGGACCAGCAGACCCCAGTTC 240
consensus_13#1      ACCGACACATCCCCGTATTTGTTCTGGTACAAACAGGAAA--------ACAACCCATTTC 52
                    *********  ** ************************          * * **** ***

consensus_13#0      ATCCTGAGCAGGTTCAAAGGTGATAAGGGGAAAACAGAAGATGAGTTTAAGGAGAGATTT 300
consensus_13#1      ---TTAAATTGCTTCTTCGG-GCCAAGCAGAAAGCTTCAGA----TCCACAGAGAATTTC 104
                        * *   * ***   ** *  ***  **** *   ***    *  *  ****  ** 

consensus_13#0      TCCTCCACAGTGAACTCCACCATGAAATCAGCTCCTCTGAAGATCCAGGAGCTTCAGCTG 360
consensus_13#1      TGCTTT--------CATCAATAAGACGTCAGTTCCTCTGAAGATCCAGGAGCTTCAGCTG 156
                    * **          *  **  * **  **** ****************************

consensus_13#0      TCAGACTCTGCAGTGTACTACTGTGCTCTGAGCGGCGTCGCCCGATCTGGGTTGCAGAAG 420
consensus_13#1      TCAGACTCTGCAGTGTACTACTGTGCTCTGAG-------GCCCACAGTGACAGGAAGCAG 209
                    ********************************       ****    **    * ** **

consensus_13#0      CTCCAATTTGGATCAGGAACCAAACTGGTTATCAGTGATGGGGACCAGTACCAACCGTCC 480
consensus_13#1      CAGAAGTGCGCACTAAAACC--------TCCACAGTAAGGCCACACTGTATCAGCGGCCG 261
                    *   * *  * *  *  * *        *   **** * *     * *** ** * * * 

consensus_13#0      TTTTACAAGCTGAAACATGGAAACACCAGCGCATGTCTGGCCACAGGTTTCAGCAGATTC 540
consensus_13#1      CT--AGAGGGCGACACACAG---CGTCTCTTCCTGTCAGGAGACGTGATGACAAAGTTTT 316
                     *  * * *  ** ***  *   *  *    * **** **  **  * *     ** ** 

consensus_13#0      CACCAACTTCAGAACAACGCATTGTTCAGCCAATCTGAAGCAGTCCTGAT----CTCTCA 596
consensus_13#1      CTTCATCTTGAGAACTG-ATGAGAGAAATCAAGCCTGCAGCACAGATGAAGAGGCCTCCA 375
                    *  ** *** *****            * * *  *** ****    ***     *   **

consensus_13#0      GGACTCGCTCTTTAACCAGGT-GGCCTTCATGGACCAGGACGCGGATGGGGAAACCAGCT 655
consensus_13#1      AGACAGGAAGAGGAACTATGTTGATTCTCTTTCATTATAAAT------------------ 417
                     ***  *      *** * ** *    ** *  *  *  *                    

consensus_13#0      GTCCTGAAGATGAGAATGAAGGAGCTGTTCGCTGCGACGATGCTCTGCAGCCCGACCCGC 715
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      TGGTGAACTTGGTGTCTCTGATGGTCACAGGACTTCGTGTGCTCCTCCTGAAGACAATGA 775
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      TCTTAAATATCCTGATGACTCTTCGTCTGCGTATCAGTCAGTAACATCAGCCGAACCTCA 835
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      GAGCTGGGTCTGACGGTCACACGTGATGTGTATAATTCCTTCTCTTACTGCTGATGTAAA 895
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      TATTTCAGTTGTGATGGTAAAATTTGAGCTTTATTCAGTAAAAATGTGATGAAATAAAAC 955
consensus_13#1      ------------------------------------------------------------
                                                                                

consensus_13#0      CAGTTAC 962
consensus_13#1      -------
                           




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)