These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAGCCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCATGTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTTCCATGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAGGGAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCTGCAGTTCCACCCAAGGGGTATTTCCTGACCAA] [+] EMBL BU807108 [ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAGCCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCATGTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTTCCATGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAGGGAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCTGCAGTTCCACCCAAGGGGTATTTCCTGACCAA] consensusID : consensus_1327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence [AGAATTTGCCGCCTCATGTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAGACCCCCCAGAGGGTATTAAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG] [+] EMBL BU807244 [AGAATTTGCCGCCTCATGTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAGACCCCCCAGAGGGTATTAAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1327#0 ACAGAACTTATCCCATCAAAACGCAACAGCTGTTCTGAGCCAACACCGACCAGACATCAG 60 consensus_1327#1 ------------------------------------------------------------ consensus_1327#0 CCGACTTTGACAGAACTCTTTTTGAAAATGAACTCCAATGTGGAGAATTTGCCGCCTCAT 120 consensus_1327#1 -------------------------------------------AGAATTTGCCGCCTCAT 17 ***************** consensus_1327#0 GTTCTTCGCTTGGTGTACAAAGAGGTTTCAGCATTAGCAGCAGACCCCCCAGATTTT-CC 179 consensus_1327#1 GTGCTTCGCTTGGCGAACAAAGAGGTTTCGGCATTAGCAGCAGACCCCCCAGAGGGTATT 77 ** ********** * ************* *********************** * consensus_1327#0 ATGGTTTACCCCAGTGAAGAAGACATCACCGAACTGCATACGTCTATTGAAGGACCAGAG 239 consensus_1327#1 AAGGTCTACCCCAGTGAAGAAGACATCACCGAACTG------------------------ 113 * *** ****************************** consensus_1327#0 GGAACTCCATTTGCTGGTGGCATTTTCCGAATGCGTCTCGTCCTTGGGAAAGACTTCCCT 299 consensus_1327#1 ------------------------------------------------------------ consensus_1327#0 GCAGTTCCACCCAAGGGGTATTTCCTGACCAA 331 consensus_1327#1 -------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |