These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CAGTTGCAGGGGCAGGATTCTGGTTCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTAAGAGGCTTTAATGCATGCGATCTAGATGTCATAGTTCAGCCAATGCCTTCTAACATTAAGCCCTTGTAGGTGTCGGTGTCTGAAACCGTCAGCGTCTGATCACGTCTGATGTTTCACTTATTGCGCAATCGCCACTCGAAAAGTGTGTTTCATTCCCAGATTTCCGCGTTTGCTCCGACGGCAGCGACGGTTTCTAATCTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCTTTTCCTTTTCTAATGAAAACCAGATGTTAACCACCATGTCCGTCTTGTATAGTCTGCAGCCACAGAAGGAGCCACATTATACACCATCATTCACCACCAACCGTGCAGAGACTAAAGGCGTGGGGCAATCATACATTAGATTTGAGCCATTCTGATCACATATCATGCACAGCCGGATCAATATTTATCTGCCACACTGTGACA] [+] EMBL BU807156 [CAGTTGCAGGGGCAGGATTCTGGTTCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTAAGAGGCTTTAATGCATGCGATCTAGATGTCATAGTTCAGCCAATGCCTTCTAACATTAAGCCCTTGTAGGTGTCGGTGTCTGAAACCGTCAGCGTCTGATCACGTCTGATGTTTCACTTATTGCGCAATCGCCACTCGAAAAGTGTGTTTCATTCCCAGATTTCCGCGTTTGCTCCGACGGCAGCGACGGTTTCTAATCTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCTTTTCCTTTTCTAATGAAAACCAGATGTTAACCACCATGTCCGTCTTGTATAGTCTGCAGCCACAGAAGGAGCCACATTATACACCATCATTCACCACCAACCGTGCAGAGACTAAAGGCGTGGGGCAATCATACATTAGATTTGAGCCATTCTGATCACATATCATGCACAGCCGGATCAATATTTATCTGCCACACTGTGACA] consensusID : consensus_1332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [CCCTAAATCAGGTTACAGCAGCGCACAGTTGCAGGGGCAGGACTCTGGATCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTGGATATGATGCCCTCCAGACGGCTGTGATGCATGTTCATACTTTCCAGAAGCAATAAATCACCTCACCGCCATGAGTTCCCAGACAAGTTTTGGCAGCAACATGCTGTTCCAGTCCATTAACGATGACCTGAACGCATCACTGGTCACAGCAGATGAGTTATCGAAAGAGTTCAACTCCCTGCTGAAGGAGGTGTCCTCGGAAGAAAAGACTGGAACACAGACCAGCCCTCGAGTTTCCAGAGAGCAGCCTCGGTCCATCAGCC] [+] EMBL CA588554 [CCCTAAATCAGGTTACAGCAGCGCACAGTTGCAGGGGCAGGACTCTGGATCGGAACAACTCCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCGACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGGACTTTAATCTGTTTGAGTGGATATGATGCCCTCCAGACGGCTGTGATGCATGTTCATACTTTCCAGAAGCAATAAATCACCTCACCGCCATGAGTTCCCAGACAAGTTTTGGCAGCAACATGCTGTTCCAGTCCATTAACGATGACCTGAACGCATCACTGGTCACAGCAGATGAGTTATCGAAAGAGTTCAACTCCCTGCTGAAGGAGGTGTCCTCGGAAGAAAAGACTGGAACACAGACCAGCCCTCGAGTTTCCAGAGAGCAGCCTCGGTCCATCAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1332#0 -------------------------CAGTTGCAGGGGCAGGATTCTGGTTCGGAACAACT 35 consensus_1332#1 CCCTAAATCAGGTTACAGCAGCGCACAGTTGCAGGGGCAGGACTCTGGATCGGAACAACT 60 ***************** ***** *********** consensus_1332#0 CCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCG 95 consensus_1332#1 CCAGTCAAGACGCAGCCGTGACTCCATGTCTGGAGAGGACGAGGCTGGAGACAGCTCTCG 120 ************************************************************ consensus_1332#0 ACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGG 155 consensus_1332#1 ACTTCTGAGAGGAGGAAACAACTCCTGGACGAAATCTGGATGGAACGAAACTGCGACAGG 180 ************************************************************ consensus_1332#0 ACTTTAATCTGTTTGAGTAAGAGGCTTTAATGCATGCGATCTAGATGTCATAGTTCAGCC 215 consensus_1332#1 ACTTTAATCTGTTTGAGT----GGATATGATGCCCTCCAGACGGCTGTGATGCAT--GTT 234 ****************** ** * * **** * * * *** ** * * consensus_1332#0 AATGCCTTCTAACATTAAGCCCTTGTAGGTGTCGGTGTCTGAAACCGTCAGCGTCTGATC 275 consensus_1332#1 CATACTTTCCAGAAGCAA-------TAAATCACCTCACC----GCCATGAGTTCCCAGAC 283 ** * *** * * ** ** * * * ** * ** * * consensus_1332#0 ACGTCTGATGTTTCACTTATTGCGCAATCGCCACTCGAAAAGTGTGTTTCATTCCCAGAT 335 consensus_1332#1 AAGTTTTGGCAGCAACATGCTGTT------CCAGTCCATTAACG------ATGACCTGAA 331 * ** * ** * ** *** ** * * * ** ** ** consensus_1332#0 TTCCGCGTTTGCTCCGACGGCAGCGACGGTTTCTAATCTTCCTTTTCCTTTTCCTTTTCC 395 consensus_1332#1 CGCATCACTGGTC---ACAGCAGATGAGTTATCGAA----------AGAGTTCAACTCCC 378 * * * * ** **** * * ** ** *** * ** consensus_1332#0 TTTTCCTTTCTTTTCCTTTTCTAATGAAAACCAGATGTTAACCACCATGTCCGTCTTGTA 455 consensus_1332#1 TGCTGAAGGAGGTGTCCTCGGAAGAAAAGACTGGAACACAG--ACCAGCCCTCGAGTTTC 436 * * * * * * ** ** ** * **** * * * consensus_1332#0 TAGTCTGCAGCCACAGA--AGGAGCCACATTATACACCATCATTCACCACCAACCGTGCA 513 consensus_1332#1 CAGAGAGCAGCCTCGGTCCATCAGCC---------------------------------- 462 ** ****** * * * **** consensus_1332#0 GAGACTAAAGGCGTGGGGCAATCATACATTAGATTTGAGCCATTCTGATCACATATCATG 573 consensus_1332#1 ------------------------------------------------------------ consensus_1332#0 CACAGCCGGATCAATATTTATCTGCCACACTGTGACA 610 consensus_1332#1 ------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |