These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [ATGTTGGCGGGTGAACAATAATGGGCTGTAATGTGAAACCGAAGGGAATACAACAGAACCGCAGTGAAGGGGAGACCAAAGGCGCGTGCCGCTCATTCGTGCCACTACGCAGAGTGCAGGGGGATGACAAATTTGCACCCAAAAGGAGAGTGGTACTTGATTCCTACTTCCTGGAACACCTGGCGAGGGATGCCGATGTCGCACAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGTGACTGGCTGCAGTTGGTGAAATACCTGACATCACAACAATTGAACATGATGACATCACATGGAGACCACCTCAGAGGTGTTTGCACGTGGCCACGCCCTCACGCTCTCCTTGTAGACATACTGCAGGTTACCCTGGATACTCCAGTGACTCAATGGCTTGCAGTCAAACTGACAACCGACCTGCAAACGCTCCCGCTGCAAGAGATTTCCTGAACAAAGTGCACAAAGAGAGGAATAAATCTGTCTCAGCGATACAGTGATTGCTGGTA] [+] EMBL CA589814 [ATGTTGGCGGGTGAACAATAATGGGCTGTAATGTGAAACCGAAGGGAATACAACAGAACCGCAGTGAAGGGGAGACCAAAGGCGCGTGCCGCTCATTCGTGCCACTACGCAGAGTGCAGGGGGATGACAAATTTGCACCCAAAAGGAGAGTGGTACTTGATTCCTACTTCCTGGAACACCTGGCGAGGGATGCCGATGTCGCACAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGTGACTGGCTGCAGTTGGTGAAATACCTGACATCACAACAATTGAACATGATGACATCACATGGAGACCACCTCAGAGGTGTTTGCACGTGGCCACGCCCTCACGCTCTCCTTGTAGACATACTGCAGGTTACCCTGGATACTCCAGTGACTCAATGGCTTGCAGTCAAACTGACAACCGACCTGCAAACGCTCCCGCTGCAAGAGATTTCCTGAACAAAGTGCACAAAGAGAGGAATAAATCTGTCTCAGCGATACAGTGATTGCTGGTA] consensusID : consensus_1380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [CTCTGTGCTTCATCTGCCCATTCTTCACACCATTCTTTTTTGGTGTTGCTTGATTTGCCCCTCTGCTACTGGATGACCAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGGTGCAGAAGTGCTGCCATTTCTGATATCCAAAATCTTAAGTTCTTTAATGTCCATCGCACTGAATGCGACCTCAGGGACGGGGCACTTGATTCCATTATGGAATGGATGTCTTAGGGAGATTGTTTGACTGGACTGGTCCACAAAAGCCACCTCTCCTTGATAGACTCCCAGTGTTGGCCCACAGTTAATAGACACCAAACTACCCAACCAATCCGAAGCCATGACGTCTAGTGCTAAATCCAAAACGTGAAAGCTGTACCTGATCAAGGACTCTGGGTCAACGTTCTGCCTTTGGACGATCAATACGAATCGATCTCTTGAAGGCAAAAATAAACGGGCTTGTGATTATTTTAGCTTCT] [-] EMBL BU807610 [CTCTGTGCTTCATCTGCCCATTCTTCACACCATTCTTTTTTGGTGTTGCTTGATTTGCCCCTCTGCTACTGGATGACCAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGCCCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGTTCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAGGTGCAGAAGTGCTGCCATTTCTGATATCCAAAATCTTAAGTTCTTTAATGTCCATCGCACTGAATGCGACCTCAGGGACGGGGCACTTGATTCCATTATGGAATGGATGTCTTAGGGAGATTGTTTGACTGGACTGGTCCACAAAAGCCACCTCTCCTTGATAGACTCCCAGTGTTGGCCCACAGTTAATAGACACCAAACTACCCAACCAATCCGAAGCCATGACGTCTAGTGCTAAATCCAAAACGTGAAAGCTGTACCTGATCAAGGACTCTGGGTCAACGTTCTGCCTTTGGACGATCAATACGAATCGATCTCTTGAAGGCAAAAATAAACGGGCTTGTGATTATTTTAGCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1380#0 ATGTTGGCGGGTGAACAATAATGGGCTGTAATGTGAAACCGAAGGGAATACAACAGAACC 60 consensus_1380#1 ------------------------------------------------------------ consensus_1380#0 GCAGTGAAGGGGAGACCAAAGGCGCGTGCCGCTCATTCGTGCCACTACGCAGAGTGCAGG 120 consensus_1380#1 -----------------------------------------------------------C 1 consensus_1380#0 GGGATGACAAATTTGCACCCAAAAGGAGAGTGGTACTTGATTCCTACTTCCTGGAACACC 180 consensus_1380#1 TCTGTGCTTCATCTG--CCCATTCTTCACACCATTCTTTTTTGGTGTTGCTTGATTTGCC 59 ** ** ** **** * *** ** * * * ** ** consensus_1380#0 TGGCGAGGGATGCCGATGTCGCACAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGC 240 consensus_1380#1 CCTCTGCTACTG--GATGAC---CAGGAGTTGTGTCTTCGACGGAATCCTTTGGACTGGC 114 * ** **** * ************************************* consensus_1380#0 CCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGT 300 consensus_1380#1 CCGGAACCTCCAGGTGACGTTCTCCATAGCTTTTGGAGCAGTGCTGAGGAGAGTTCACGT 174 ************************************************************ consensus_1380#0 TCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAG 360 consensus_1380#1 TCTCCATAGACCTGGGGTCACCTTTGGGGACTGCAACTGGGGCACTACCAACATGAGCAG 234 ************************************************************ consensus_1380#0 TGACTGGCTGCAGTTGGTGAAATACCTGACATCACAACAATTGAACATGATGA----CAT 416 consensus_1380#1 GTGCAG-----AAGTGCTGCCATTTCTGATATCCAAAATCTTAAGTTCTTTAATGTCCAT 289 * * * ** ** ** **** *** ** ** * * * *** consensus_1380#0 CACA-TGGAGACCACCTCAGAGGTGTTTGCACGTGGCCACGCCCTC--ACGCTCTCCTTG 473 consensus_1380#1 CGCACTGAATGCGACCTCAGGGACGGG-GCACTTGATTCCATTATGGAATGGATGTCTTA 348 * ** ** * * ******* * * **** ** * * * * *** consensus_1380#0 TAGACAT------ACTGCA---GGTTACCCTGGATACTCC------AGTGACTC-----A 513 consensus_1380#1 GGGAGATTGTTTGACTGGACTGGTCCACAAAAGCCACCTCTCCTTGATAGACTCCCAGTG 408 ** ** **** * * ** * ** * * ***** consensus_1380#0 ATGGCTTGCAGTCAAACTGACAACCGACCTGCAAACGCTCCCGCTGCAAGAGATTTCCTG 573 consensus_1380#1 TTGGCCCACAGTTAA-TAGACACCAAACTACCCAACCAATCCGAAGCCAT-GACGTCTAG 466 **** **** ** **** * ** * *** *** ** * ** ** * consensus_1380#0 AACAAAGTGCACAAAGAGAGGAATAAATCTGTCTCAGCGATACAGTGATTGCTGGTA--- 630 consensus_1380#1 TGCTAAATCCAAAACGTGAAAGCTGTACCTGA-TCAAGGACTCTG-GGTCAACGTTCTGC 524 * ** * ** ** * ** * * *** *** ** * * * * * * consensus_1380#0 ------------------------------------------------------------ consensus_1380#1 CTTTGGACGATCAATACGAATCGATCTCTTGAAGGCAAAAATAAACGGGCTTGTGATTAT 584 consensus_1380#0 ---------- consensus_1380#1 TTTAGCTTCT 594 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |