|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 743 fasta sequence
[ATCAGCTTGGCTCGGGAGCTGGTCGAATTATACGGACGGCCTTGGACTATTTTTAGGCTCGACTGGGGTCAAACAAAAGATCGGAGGGTGACCAAAAAGACGTAACTGGAACACGAAGCCCTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGCGTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGCACAGAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCATCAGAATGGTGAAAGTGGTGTCCCCCAAACACAGACTAATTAAAGTGGACTCTCAGGAGTTTGGCCGCTGCAAGGTGCCTTTGAGTCCTGTTGCTGTGCAGGAAGAACCTGTGATCCCATCTGCCCCGTCAGCGTTGGAGGGCGACACAGACTACTCTGACCCATTTGACGTGCGTCCAGACCCCAGGGGCAGACCACACTGGGAAACCAAATCTACATCGACAGACTGCTGCAGCTACATGGAGCCATTTGAGGCCCAGCGGATCATTTCTGAAATGCAGCACAGTAAGATAACCAACAGGTCTGGGAGCGGAGATGGTGGCCAGTTATACGATAACCCCTATGAGGAGAGGACACGTCAGCACCATCAGGCTGCTCCCTCGGTACAGAAGTCTCACCGGGTCGAAGCTGGACGCGTCCAGATGGACAGCAGGGAGAGCCGACTGCC]
[+] EMBL CA846025 [ATCAGCTTGGCTCGGGAGCTGGTCGAATTATACGGACGGCCTTGGACTATTTTTAGGCTCGACTGGGTTCAAACAAAAGATCGGATGGTGACCAAAAAGACGTAACTGGAACACCAAGCCCTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGCGTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGTACAGAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCATCAGAATGGTGAAAGTGGTGTCCCCCAAACACAGACTAATTAAAGTGGACTCTCAGGAGTTTGGCCGCTGCAAGGTGCCTTTGAGTCCTGTTGCTGTGCAGGAAGAACCTGTGATCCCATCTGCCCCGTCAGCGTTGGAGGGCGACACAGACTACTCTGACCCATTTGACGTGCGTCCAGACCCCAGGGGCAGACCACACTGGGAAACCAAATCTACATCGACAGACTGCTGCAGCTACATGGAGCCATTTGAGGCCCAGCGGATCATTTCTGAAATGCAGCACAGTAAGATAACCAACAGGTCTGGGAGCGGAGATGGTGGCCAGTTATACGATAACCCCTATGAGGAGAGGACACGTCAGCACCATCAGGCTGCTCCCTCGGTACAGAAGTCTCACCGGGTCGAAGCTGGACGCGTCCAGATGGACAGCAGGGAGAGCCGACTGCC]
[+] EMBL FR0059613 [ CTCGTTTGGGGTCAAACAAAAGATCGGAGGGTGACCAATAATACGTAACTGCAACACGAACCCCTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGCGTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGCACAGAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCAT ]
consensusID : consensus_1414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[TGGGTTCAAACAAAAGATCGGATGGTGACCAAAAAGACGTAACTGGAACACGAAGCCCTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGCGTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGTACAGAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCATCAGAATGGTGAATTCAGTCCCACTGTGATCCTCC]
[+] EMBL FR0059619 [TGGGTTCAAACAAAAGATCGGATGGTGACCAAAAAGACGTAACTGGAACACGAAGCCCTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGCGTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGTACAGAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCATCAGAATGGTGAATTCAGTCCCACTGTGATCCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1414#0 ATCAGCTTGGCTCGGGAGCTGGTCGAATTATACGGACGGCCTTGGACTATTTTTAGGCTC 60
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 GACTGGGGTCAAACAAAAGATCGGAGGGTGACCAAAAAGACGTAACTGGAACACGAAGCC 120
consensus_1414#1 ---TGGGTTCAAACAAAAGATCGGATGGTGACCAAAAAGACGTAACTGGAACACGAAGCC 57
**** ***************** **********************************
consensus_1414#0 CTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGC 180
consensus_1414#1 CTCAATGCCGAGAAAGAAGATCCATGGCAAAGTGGTTGAAGCTGAACTTTGGCAGCAAGC 117
************************************************************
consensus_1414#0 GTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGCACA 240
consensus_1414#1 GTGACCCTCCGCAGCCCCCGAGGCCAGATTACAGTGAAAGTGAGATTCTGCGGGCGTACA 177
******************************************************** ***
consensus_1414#0 GAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCATCAGA 300
consensus_1414#1 GAGCTCAGAAGGAGCTGGACTTTGAAGACCCTTACGAGCACACGGATAAAGAGCATCAGA 237
************************************************************
consensus_1414#0 ATGGTGAAAGTGGTGTCCCCCAAACACAGACTAATTAAAGTGGACTCTCAGGAGTTTGGC 360
consensus_1414#1 ATGGTGAATTCAGTCCCACTGTGATCCTCC------------------------------ 267
******** ** * * * *
consensus_1414#0 CGCTGCAAGGTGCCTTTGAGTCCTGTTGCTGTGCAGGAAGAACCTGTGATCCCATCTGCC 420
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 CCGTCAGCGTTGGAGGGCGACACAGACTACTCTGACCCATTTGACGTGCGTCCAGACCCC 480
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 AGGGGCAGACCACACTGGGAAACCAAATCTACATCGACAGACTGCTGCAGCTACATGGAG 540
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 CCATTTGAGGCCCAGCGGATCATTTCTGAAATGCAGCACAGTAAGATAACCAACAGGTCT 600
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 GGGAGCGGAGATGGTGGCCAGTTATACGATAACCCCTATGAGGAGAGGACACGTCAGCAC 660
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 CATCAGGCTGCTCCCTCGGTACAGAAGTCTCACCGGGTCGAAGCTGGACGCGTCCAGATG 720
consensus_1414#1 ------------------------------------------------------------
consensus_1414#0 GACAGCAGGGAGAGCCGACTGCC 743
consensus_1414#1 -----------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |