These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 829 fasta sequence [GCGCTTATGAGAGACAGAGCAGAGTTCATGGGACTTTTCCCACACAAAGTCTTAACCTTGCAAGATTCCAAGAACAGTTTGTTTTTGTGAGCGAGTCTTTCCCTAACTCTAAAACTTGTTTGGGGATTACCGGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACCTCCTAACAACATGCACCGCTTTTCTTGTCCCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCCCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGTGATGAACGACTTGCACCAGGTGGACATATGTACAGGTCCTGGCTCATCTATCGACCTCAGCATCCCCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGAATTCTCAAGTACTCAAAGACACAGCAAGATATTCAGAGAGGGAAACTCCATGGCTCTCTGGACATAAGCTCTGCAGTATTGTCCATAAATAAGAAAGCCAAACGCATAGATCTAGATGCAGGAGACAACCTGTACCACCTCAAGGCAAAGACCCATGAGCTCTTTTACATATGGCTGACCAAGCTTTGTGCTCACCGTGTGTTTAAAAAAAATGAAGCAATGAGCGTTGGCCAGGGTGTCTTTCATGCATTGTCCTTGGCGCCAAGTTCCCTTCCAGCGATGGCCTCTCTTGCCCAGAAAAAC] [+] EMBL CA846120 [GCGCTTATGAGAGACAGAGCAGAGTTCATGGGACTTTTCCCACACAAAGTCTTAACCTTGCAAGATTCCAAGAACAGTTTGTTTTTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTTTGTGGATTACCAGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACCTCCTAACAACATGCACCGCTTTTCTTGTCCCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCCCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGTGATGAACGACTTGCACCAGGTGGACATATGTACAGGTCCTGGCTCATCTATCGACCTCAGCATCCCCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGAATTCTCAAGTACTCAAAGACACAGCAAGATATTCAGAGAGGGAAACTCCATGGCTCTCTGGACATAAGCTCTGCAGTATTGTCCATAAATAAGAAAGCCAAACGCATAGATCTAGATGCAGGAGACAACCTGTACCACCTCAAGGCAAAGACCCATGAGCTCTTTTACATATGGCTGACCAAGCTTTGTGCTCACCGTGTGTTTAAAAAAAATGAAGCAATGAGCGTTGGCCAGGGTGTCTTTCATGCATTGTCCTTGGCGCCAAGTTCCCTTCCAGCGATGGCCTCTCTTGCCCAGAAAAAC] [+] EMBL FR0058804 [ TCCAAGAACAGTTTGTTTTTGTGAGCGAGTCTTTCCCTAACTTTAAAACTTGTTTGGGGATTACCGGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACCTTCTAAC ] consensusID : consensus_1431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [TTTTTGCAAGACTCCAAGAACAGTTTGGGGGTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTCTGTGGATTACCAGAGAGACTTCAGACATCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCGCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGGGATGAACGACTTGCACCAGGTGGACATATGTACAGGGCCTGGCTCATCTATCGACCTCAGCATCCGCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGGATTCTTAAGTTCTCAAAGACACAGCAAGGATATTCAGAGAGGGAGACTCCATGGGTTCTCTTGGCCATAAGCTCTGCAGTATTTGTC] [+] EMBL FR0058581 [TTTTTGCAAGACTCCAAGAACAGTTTGGGGGTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTCTGTGGATTACCAGAGAGACTTCAGACATCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCGCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGGGATGAACGACTTGCACCAGGTGGACATATGTACAGGGCCTGGCTCATCTATCGACCTCAGCATCCGCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGGATTCTTAAGTTCTCAAAGACACAGCAAGGATATTCAGAGAGGGAGACTCCATGGGTTCTCTTGGCCATAAGCTCTGCAGTATTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1431#0 GCGCTTATGAGAGACAGAGCAGAGTTCATGGGACTTTTCCCACACAAAGTCTTAACCTTG 60 consensus_1431#1 ------------------------------------------------------TTTTTG 6 *** consensus_1431#0 CAAGATTCCAAGAACAGTTTGTTTTTGTGAGCGAGTCTTTCCCTAACTCTAAAACTTGTT 120 consensus_1431#1 CAAGACTCCAAGAACAGTTTGGGGGTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTC 66 ***** *************** ****** *************************** consensus_1431#0 TGGGGATTACCGGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACC 180 consensus_1431#1 TGTGGATTACCAGAGAGACTTCAGACATCAGT---------------------------- 98 ** ******** ******************** consensus_1431#0 TCCTAACAACATGCACCGCTTTTCTTGTCCCAGTATGATGATGGACCCTCAGGTGTGTCC 240 consensus_1431#1 ----------------------------------ATGATGATGGACCCTCAGGTGTGTCC 124 ************************** consensus_1431#0 ACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCAC 300 consensus_1431#1 ACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCAC 184 ************************************************************ consensus_1431#0 ATTTAAGCCTGGCCACTCCCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTC 360 consensus_1431#1 ATTTAAGCCTGGCCACTCGCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTC 244 ****************** ***************************************** consensus_1431#0 CAATAACTGGGAAGTGATGAACGACTTGCACCAGGTGGACATATGTACAGGTCCTGGCTC 420 consensus_1431#1 CAATAACTGGGAAGGGATGAACGACTTGCACCAGGTGGACATATGTACAGGGCCTGGCTC 304 ************** ************************************ ******** consensus_1431#0 ATCTATCGACCTCAGCATCCCCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTA 480 consensus_1431#1 ATCTATCGACCTCAGCATCCGCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTA 364 ******************** *************************************** consensus_1431#0 TCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGAATTCTCAAGTACTC 540 consensus_1431#1 TCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGGATTCTTAAGTTCTC 424 ********************************************* ***** **** *** consensus_1431#0 AAAGACACAGCAAG-ATATTCAGAGAGGGAAACTCCATGG-CTCTCT-GGACATAAGCTC 597 consensus_1431#1 AAAGACACAGCAAGGATATTCAGAGAGGGAGACTCCATGGGTTCTCTTGGCCATAAGCTC 484 ************** *************** ********* ***** ** ********* consensus_1431#0 TGCAGTATTGTCCATAAATAAGAAAGCCAAACGCATAGATCTAGATGCAGGAGACAACCT 657 consensus_1431#1 TGCAGTATTTGTC----------------------------------------------- 497 ********* * consensus_1431#0 GTACCACCTCAAGGCAAAGACCCATGAGCTCTTTTACATATGGCTGACCAAGCTTTGTGC 717 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 TCACCGTGTGTTTAAAAAAAATGAAGCAATGAGCGTTGGCCAGGGTGTCTTTCATGCATT 777 consensus_1431#1 ------------------------------------------------------------ consensus_1431#0 GTCCTTGGCGCCAAGTTCCCTTCCAGCGATGGCCTCTCTTGCCCAGAAAAAC 829 consensus_1431#1 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |