These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence [GCCGATAAAGA-GGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTTGGGAATTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCTAAACTCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGAGTCCTGCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGATAGTCCAGCTGTCTAAGCATGGAGTCAAGTCTCTG] [+] EMBL CA846147 [GCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATCCTTGGGTTTTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTG TGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCTAAACTCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGAGTCCTGCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGATAGTCCAGCTGTCTAAGCATGGAGTCAAGTCTCTG] [+] EMBL CA846084 [ CGATAAAGA GGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTT GGAATTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGTTTGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCT ] consensusID : consensus_1433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCGGGGTTTTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGTGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGCACCAGTGGAGA] [+] EMBL CA589594 [GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCGGGGTTTTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGTGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGCACCAGTGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1433#0 ----GCCGATAAAGA-GGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTTGGGAATTC 55 consensus_1433#1 GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCG-GGGTTTTC 59 ** ******** ********************************** *** *** consensus_1433#0 GGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTG 115 consensus_1433#1 GGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTG 119 ************************************************************ consensus_1433#0 GGACTTGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGG 175 consensus_1433#1 GGACTTGT-GGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGG 178 ******* *************************************************** consensus_1433#0 AGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTC 235 consensus_1433#1 AGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTC 238 ******************************************************** *** consensus_1433#0 CCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTC 295 consensus_1433#1 CCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTC 298 ************************************************************ consensus_1433#0 CACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGG 355 consensus_1433#1 CACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGG 358 ************************************************************ consensus_1433#0 CAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGT 415 consensus_1433#1 CAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGG-- 416 ********************************************************** consensus_1433#0 GATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCT 475 consensus_1433#1 ----CACCA--GTGGAGA------------------------------------------ 428 * *** *** * consensus_1433#0 GGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAA 535 consensus_1433#1 ------------------------------------------------------------ consensus_1433#0 TCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTA 595 consensus_1433#1 ------------------------------------------------------------ consensus_1433#0 TGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATC 655 consensus_1433#1 ------------------------------------------------------------ consensus_1433#0 TAAACTCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGA 715 consensus_1433#1 ------------------------------------------------------------ consensus_1433#0 GTCCTGCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGAT 775 consensus_1433#1 ------------------------------------------------------------ consensus_1433#0 AGTCCAGCTGTCTAAGCATGGAGTCAAGTCTCTG 809 consensus_1433#1 ---------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |