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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[CAATCGAGACGCTTCTGGGGTCTTACTCCCCTCATACGGGGAAAACCAAGGAACTGCTGCAGCAACATCGTCACAAGGTTCACCGGCAGGGAGATCACTGGCCAGGGCTTCAGTCGAGGCACACAGCTCCCTGGAGGGTTGCTGCAGGAGCGAGATAAGAGGGCTAAGTGGAAAGGCATCCCTACTCTACTACAGAAGCTGTACGAGAGCAGCCATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGGCGNCCCAGCTATCCATGGAGGCAATGTCCTTTGTCACAGAGGACAGGAAGACCGTTCAGGAATCCACCTTCCCCAACACGCACACCTTTGACCTCTTTGGGGGAGTTGATCTGCTTGTGGAGATCTTGATGAGACCTACGTTAACTATGCAGAAGAAAAAGCCCAAAATGAACGATGATTTGGTCAAAGACTGCCTTAGTGTTCTGTACAACTGTTGTATATGTACGGAGGGAGTGACGAAGAGCCTGGCAGCCCGGGACGACTTCGTTCTTTTCCTATTCACCCTGATGACGAATAAGAAGACCTTCCTGCAGACTGCCACCCTCATCGAGGATATTCTCGGAGTCAAAAAGGACATGATCCAGTTGGAGGGTATCCCCAATCTGTCCGGTCTGGTCCAGAGCTTCGACCAGCAGCAGCTGGCCAACTTCTGCCGCATCCTTTCTGTCACCATCTCAGAACCGGATGTTGGGAACGATGACAAGCACACGCTGCTGGCGAAGAACGCTCAACAGAAGCGCAACGCTAGCCCCTCGAGGGCAGAGGTC]
[+] EMBL CA588569 [CAATCGAGACGCTTCTGGGGTCTTACTCCCCTCATACGGAGCATACCAAGGAACTGCTGCAGCAACATCGTCACAAGGTTCACCGGCAGCAAGATCACTGGCCAGGGCTTCAGTCGAGGCACACAGCTCCCTGGAGGGTTGCTGCAGGAGCGAGATAAGAGGGCTAAGTGGAAAGGCATCCCTACTCTACTACAGAAGCTGTACGAGAGCAGCCATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGTCGTCCCAGCTATCCATGGAGGCAATGTCCTTTGTCACAGAGGACAGGAAGACCGTTCAGGAATCCACCTTCCCCAACACGCACTCCTTTGACCTCTTTGGTGGAGTTGATCTGCTTGTGGAGATCTTGATGAGACCTACGTTAACTATGCAGAAGAAAAAGCCCAAAATGAACGATGATTTGGTCAAAGACTGCCTTAGTGTTCTGTACAACTGTTGTATATGTACGGAGGGAGTGACGAAGAGCCTGGCAGCCCGGGACGACTTCGTTCTTTTCCTATTCACCCTGATGACGAATAAGAAGACCTTCCTGCAGACTGCCACCCTCATCGAGGATATTCTCGGAGTCAAAAAGGACATGATCCAGTTGGAGGGTATCCCCAATCTGTCCGGTCTGGTCCAGAGCTTCGACCAGCAGCAGCTGGCCAACTTCTGCCGCATCCTTTCTGTCACCATCTCAGAACCGGATGTTGGGAACGATGACAAGCACACGCTGCTGGCGAAGAACGCTCAACAGAAGCGCAACGCTAGCCCCTCGAGGGCAGAGGTC]
[+] EMBL FR0059155 [ GGAAAACCAAGGAACTGCTGCATCAACATCGTCACAAGGTTCACCGGCAGGGAGATCACTGGCCAGGGCTTCAGTCGAGGCACACAGCTCCCTGGAGGGTTGCTGCAGGAGCGAGATAAGAGGGCTAAGTGGAAAGGCATCCCTACTCTACTACAGAAGCTGTACGAGAGCAGCCATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGGCGNCCCAGCTATCCATGGAGGCAATGTCCTTTGTCACAGAGGACAGGAAGACCGTTCAGGAATCCACCTTCCCCAACACGCACACCTTTGACCTCTTTGGGGGAGTTGATCTGCTTGT ]
consensusID : consensus_1445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[CAATTTATTATTTCAACAACATCGTCACAAGGGTGACCGTCATCAAGATCACTAACCACCCCTTCACTCTAAACACACACACACATCATTAATGTCCTATAACCCCGAAATGATAAGCACACCTCTCGGTGCACTGTGATCAATATCTAAAATGTCGCAAATTCTATTAACACGGATTAAATACTGGTCAGCAAAAAACATGCAGCTCCCTGGAGCGTTGCTGCACAATCGAGATAAGAGGGCTAAGTGTAAAGGCATCCCTACTCTACTACAGAAGCTTGACGAGAGCAGCCATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGTCCGCCCAGCTATCCATGGAGGCAATGTCCTTTGTCACAAAGGACAGGAAGACCTTTCATAAATCCATCTTCCCCAACACCCACACCTTTGACCTCTTTGGTGGAGTTGAAC]
[+] EMBL FR0059727 [CAATTTATTATTTCAACAACATCGTCACAAGGGTGACCGTCATCAAGATCACTAACCACCCCTTCACTCTAAACACACACACACATCATTAATGTCCTATAACCCCGAAATGATAAGCACACCTCTCGGTGCACTGTGATCAATATCTAAAATGTCGCAAATTCTATTAACACGGATTAAATACTGGTCAGCAAAAAACATGCAGCTCCCTGGAGCGTTGCTGCACAATCGAGATAAGAGGGCTAAGTGTAAAGGCATCCCTACTCTACTACAGAAGCTTGACGAGAGCAGCCATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGTCCGCCCAGCTATCCATGGAGGCAATGTCCTTTGTCACAAAGGACAGGAAGACCTTTCATAAATCCATCTTCCCCAACACCCACACCTTTGACCTCTTTGGTGGAGTTGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1445#0 ------------------------------------------------------------
consensus_1445#1 CAATTTATTATTTCAACAACATCGTCACAAGGGTGACCGTCATCAAGATCACTAACCACC 60
consensus_1445#0 -------------CAATCG-AGACGCTTCTGGGGTCTTACTCCCCTCATACGGGGAAAAC 46
consensus_1445#1 CCTTCACTCTAAACACACACACACATCATTAATGTCCTATAACCCCGAAATGATAAGCAC 120
** * * ** * *** ** *** * * * * **
consensus_1445#0 ------CAAGGAACTG----CTGCAGCAACATCGTCACAAGGTTCACCGGCAGGGA--GA 94
consensus_1445#1 ACCTCTCGGTGCACTGTGATCAATATCTAAAATGTCGCAAATTCTATTAACACGGATTAA 180
* * **** * * * * * *** *** * * ** *** *
consensus_1445#0 TCACTGGCCAGGGCTTCAGTCGAGGCACACAGCTCCCTGGAGGGTTGCTGCAGGAGCGAG 154
consensus_1445#1 ATACTGGTCAG-----CAA--AAAACATGCAGCTCCCTGGAGCGTTGCTGCACAATCGAG 233
***** *** ** * ** ************* ********* * ****
consensus_1445#0 ATAAGAGGGCTAAGTGGAAAGGCATCCCTACTCTACTACAGAAGCTGTACGAGAGCAGCC 214
consensus_1445#1 ATAAGAGGGCTAAGTGTAAAGGCATCCCTACTCTACTACAGAAGCTTGACGAGAGCAGCC 293
**************** ***************************** ************
consensus_1445#0 ATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGGCGNCCCAGCTAT 274
consensus_1445#1 ATCTCAACAGTGACCTCTCCCATGCTCATGGCTTTCTCAAGTTGTTGTCCGCCCAGCTAT 353
*********************************************** * *********
consensus_1445#0 CCATGGAGGCAATGTCCTTTGTCACAGAGGACAGGAAGACCGTTCAGGAATCCACCTTCC 334
consensus_1445#1 CCATGGAGGCAATGTCCTTTGTCACAAAGGACAGGAAGACCTTTCATAAATCCATCTTCC 413
************************** ************** **** ****** *****
consensus_1445#0 CCAACACGCACACCTTTGACCTCTTTGGGGGAGTTGATCTGCTTGTGGAGATCTTGATGA 394
consensus_1445#1 CCAACACCCACACCTTTGACCTCTTTGGTGGAGTTGAAC--------------------- 452
******* ******************** ******** *
consensus_1445#0 GACCTACGTTAACTATGCAGAAGAAAAAGCCCAAAATGAACGATGATTTGGTCAAAGACT 454
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 GCCTTAGTGTTCTGTACAACTGTTGTATATGTACGGAGGGAGTGACGAAGAGCCTGGCAG 514
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 CCCGGGACGACTTCGTTCTTTTCCTATTCACCCTGATGACGAATAAGAAGACCTTCCTGC 574
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 AGACTGCCACCCTCATCGAGGATATTCTCGGAGTCAAAAAGGACATGATCCAGTTGGAGG 634
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 GTATCCCCAATCTGTCCGGTCTGGTCCAGAGCTTCGACCAGCAGCAGCTGGCCAACTTCT 694
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 GCCGCATCCTTTCTGTCACCATCTCAGAACCGGATGTTGGGAACGATGACAAGCACACGC 754
consensus_1445#1 ------------------------------------------------------------
consensus_1445#0 TGCTGGCGAAGAACGCTCAACAGAAGCGCAACGCTAGCCCCTCGAGGGCAGAGGTC 810
consensus_1445#1 --------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |