These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 494 fasta sequence [TTCCAGAAAGCATTAGCTGCTGCAATTCTGGGTAACCGCCTCTATTTAGTTTTTTTGACATGACAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGCCTTTAAGCAAGGATGGACAGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGGTTGGGATCCGGAAACCATTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGATGGGTCTATGATGCACCCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCGACAACAATGGCCTGATCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGACACTTAGTTTTGGGGCGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATATTTTTTGACCTGCTGCTTGGTGGCATTGGT] [+] EMBL FR0059158 [TTCCAGAAAGCATTAGCTGCTGCATTTCTGGGTAACCGCCTCTATTTAGTTTTTTTGACATGACCCCTCCCGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAATAGAATCTCACCCTGCCTTTAAGCAAGGATGGACAGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGATTGGGATCCTGA ] [+] EMBL CA590821 [ ATTTTGTATAACC CCTCTATTTAGTTTTTTTGACATGATAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGCCTTTAAGCAAGGATGGTTTGTTTGAAAGTTGTAAAATGTTCACCCCTGTGGGTTGGGATCTGGAAACCATTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGATGGGTCTATGATGCACCCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCGACAACAATGGCCTGATCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGACACTTAGTTTTGGGGCGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATATTTTTTGACCTGCTGCTTGGTGGCATTGGT] consensusID : consensus_1461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCACTCTGCATCCCCACCCTACTTGNNAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTGGGGCCTGGGAAACCATTGAACTTT] [+] EMBL FR0059605 [TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCACTCTGCATCCCCACCCTACTTGNNAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAACACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACCCTGGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTGGGGCCTGGGAAACCATTGAACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1461#0 -------------TTCCAGAAAGCATTAGCTGCTGCAATTCTGGGTAACCGCCTCTATTT 47 consensus_1461#1 TTTGNTTGGTTTATTTCAGAAATCCTTAGTAGGGGCA-CTCTGCATCCCCACC-CTACTT 58 ** ****** * **** * *** **** * ** ** *** ** consensus_1461#0 AGTTTTTTTGACATGACAGGTCAGGTGTTTAATGGCATGAGCTTCCCACATCACTGCAAC 107 consensus_1461#1 GNNAACTTTTACATAGTTGGACAGGTTTTTACAGACTTGAGGTTCCCACATCACTGCAAC 118 *** **** ** ***** **** * * **** ****************** consensus_1461#0 ACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACC 167 consensus_1461#1 ACTGACTGGATCTTGGAGCTTGCACCCAACCTGACCCAGGAGAAACAAAGGAATCTCACC 178 ************************************************************ consensus_1461#0 CTGCCTTTAAGCAAGGATGGACAGTTTGAAAGTTGTAAAATGTTCAC-CCCTGTGGGTTG 226 consensus_1461#1 CTGGCTTTAAGCAAGGATGGACTGGTTGAAAGCTGTAAAAGTGTCACACCCTGGGGGTTG 238 *** ****************** * ******* ******* **** ***** ****** consensus_1461#0 GGATCCGG-AAACCATTGAAGTTTATGGGATTAACAGCACAACTGAATGCATAAATGGAT 285 consensus_1461#1 GGGCCTGGGAAACCATTGAACTTT------------------------------------ 262 ** * ** *********** *** consensus_1461#0 GGGTCTATGATGCACCCAAAGGTGCTTCCTCTACTACGACTGAGTTTGATCTTGTTTGCG 345 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 ACAACAATGGCCTGATCACAGCATCTCAGTCCATCTATATGGTAGGCTTCCTGGTTGGGA 405 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 CACTTAGTTTTGGGGCGCTGTCTGACAGATTTGGCCGGAGAATCACAGCCCTGCTCATAT 465 consensus_1461#1 ------------------------------------------------------------ consensus_1461#0 TTTTTGACCTGCTGCTTGGTGGCATTGGT 494 consensus_1461#1 ----------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |