These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence [GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCCGGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTTAAGGGAAGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCAAAACACATTAACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG] [+] EMBL CA845239 [GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCCGGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTTAAGGGAAAAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATT ] [+] EMBL FR0055295 [ TGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAATTAAAAGACCATCACAGAAGCCGGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGATCATATGGGCTTTT AGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCATTACACATTAACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACATGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG] consensusID : consensus_1465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [CTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAACTAAAAGACCATCACAGAAGCCGGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAGGAAATGGGCCTTTTGTGGTAAAGCCCAATGAGCCCGACCCATCACCCGAACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGCAGAACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC] [+] EMBL FR0056362 [CTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAACTAAAAGACCATCACAGAAGCCGGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAGGAAATGGGCCTTTTGTGGTAAAGCCCAATGAGCCCGACCCATCACCCGAACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGCAGAACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1465#0 GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCA 60 consensus_1465#1 -----------------------------------CTCGCACCAGTGCCATTGCTCTGCA 25 ************************* consensus_1465#0 GAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCC 120 consensus_1465#1 GAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAACTAAAAGACCATCACAGAAGCC 85 ********************************** *** ********************* consensus_1465#0 GGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTT 180 consensus_1465#1 GGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAGGAAATGGGCCTTT 145 ** ******************************************* * ****** *** consensus_1465#0 AAGGGAAGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCAAAACACATT 240 consensus_1465#1 TGTGGTAAAGCCCAATGAGCCCGACCCATCACCCGAACTCTTGGCCAAGCAAAACACATT 205 ** * ***** ** ************ * ** ************ ************ consensus_1465#0 AACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCAC 300 consensus_1465#1 AACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGCAGAACA-----------CGTATCAC 254 *************** ************************* ******** consensus_1465#0 TCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAA 360 consensus_1465#1 TCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAA 314 ************************************************************ consensus_1465#0 AATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG 414 consensus_1465#1 AATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC--------------- 353 ********************** * ** ****** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |