These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGAAAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGAGCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAATGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA] [+] EMBL CA589014 [GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGAAAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGAGCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAATGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA] consensusID : consensus_1523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGGTGGCCAG] [+] EMBL CA590227 [TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGGTGGCCAG] [+] EMBL BU807443 [ GATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGATAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACAACTACGGTGTAGATGGGATGGATCTGACATCACAGGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1523#0 -GGGCCACTTCACCACCGTTAGAC----ATGGCGCTTCATTTACAGAGCAGTGGACTGAT 55 consensus_1523#1 TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAG 60 * ** * ** ** ** * ** * ** ** * ** ** consensus_1523#0 GGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGAC 115 consensus_1523#1 GGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGA 120 *** * ** *** ** ** ** * ** * * * * consensus_1523#0 ATTGAAAGGCAGAGAAAACT----GCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTC 171 consensus_1523#1 ACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTT 180 * ** * * * * *** * * * * ** * * consensus_1523#0 CCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGC 231 consensus_1523#1 TTGCACTGTAATGGAGTATTGTGA----AGGCAACGACTTGGATTTCTACTTGAAGCAAC 236 * *** * * * *** * ****** * * * * * * consensus_1523#0 TGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCA 291 consensus_1523#1 ATAAGCTTATGTCTGAGAAAGAGGCACGATCAATC-GTCATGCAGATTGTGAATGCTTTA 295 ** * ** ** ** * *** * ** * * ** * * * * * consensus_1523#0 CGAG--CAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAA 349 consensus_1523#1 AAATATCTGAACGAAATC---AAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAAT 352 * * * * ** *** **** * * *** * * * ** * * consensus_1523#0 ATCCAGGCAGAGC-TGGAGCGTC-TGGAGAGGGTGCGCAACCTTC-ACATTCGAGAGCTG 406 consensus_1523#1 ATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCC 412 *** * * * *** ** * ** *** * * ** * * ** ** * * consensus_1523#0 AAGAGAATAAATAATGAAGAC---AGCTCACAATTTAAAGATCATCCAACACTGAATGAG 463 consensus_1523#1 AAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGT 472 ** * ** ** **** *** * * * * **** ** *** * ** consensus_1523#0 CGA---TATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCT 520 consensus_1523#1 GGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATC 532 * *** ***** ** * * * * *** ** *** *** consensus_1523#0 TTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGG 580 consensus_1523#1 TCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGT--------CTGG 584 * ** * * ** * * ** ** ** * **** *** * * ** consensus_1523#0 AGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA 616 consensus_1523#1 ATGCAAGAAAACCTGGTGGCCAG------------- 607 * * * ** ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |