Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1523 cluster # 1523       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1523#0 length = 616 sequences # 1  
consensus_1523#1 length = 607 sequences # 2  

consensusID : consensus_1523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence
                              [GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGAAAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGAGCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAATGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA]

[+] EMBL CA589014             [GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGAAAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGAGCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAATGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA]


>consensus_1523#0 GGGCCACTTCACCACCGTTAGACATGGCGCTTCATTTACAGAGCAGTGGACTGATGGATA TGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGACATTGA AAGGCAGAGAAAACTGCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTCCCAAGCCCT AACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGCTGAAAATGA TCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCACGAGCAGGA AGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAGGCAGA GCTGGAGCGTCTGGAGAGGGTGCGCAACCTTCACATTCGAGAGCTGAAGAGAATAAATAA TGAAGACAGCTCACAATTTAAAGATCATCCAACACTGAATGAGCGATATCTGCTCCTCCA CCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCTTTTGACTTGATTGAACAACG ATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGGAGGGAGGAGAAGAAAGAAAA CTATCACAAACATGCA



consensusID : consensus_1523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 607
fasta sequence
                              [TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGGTGGCCAG]

[+] EMBL CA590227             [TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGGTGGCCAG]
[+] EMBL BU807443             [      GATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAGGGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGAACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTTTTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAAGCTTATGTCTGATAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATATCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCATGGATGATGACAACTACGGTGTAGATGGGATGGATCTGACATCACAGGG                                                                                                                                           ]


>consensus_1523#1 TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAG GGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGA ACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTT TTGCACTGTAATGGAGTATTGTGAAGGCAACGACTTGGATTTCTACTTGAAGCAACATAA GCTTATGTCTGAGAAAGAGGCACGATCAATCGTCATGCAGATTGTGAATGCTTTAAAATA TCTGAACGAAATCAAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAATATCTTGTT GGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCCAAAATCAT GGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGTGGGACTTA TTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATCTCCAACAA GGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGTCTGGATGCAAGAAAACCTGG TGGCCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1523#0      -GGGCCACTTCACCACCGTTAGAC----ATGGCGCTTCATTTACAGAGCAGTGGACTGAT 55
consensus_1523#1      TGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATTGGAG 60
                       *      ** * ** ** **  *     **    * **   **  * **       ** 

consensus_1523#0      GGATATGCCTTCCAGAATCTAGTGAAACAGCAAGAGTGGATAAACCAACAGAGAGAGGAC 115
consensus_1523#1      GGAGGAGAAGAAAGAAAACTATCACAAACATGCATGTCGAGAGTACAGAATACACAAAGA 120
                      ***   *        ** ***    **        ** ** *   **  * * * *    

consensus_1523#0      ATTGAAAGGCAGAGAAAACT----GCTTGCCAAGAGGAAACCGCCATCTTCAAGCAACTC 171
consensus_1523#1      ACTGGACCACCCACGGATTGTGAAACTTTACGACTACTTCTCACTGGACACAGACTCGTT 180
                      * ** *   *  *   *        ***  * *        * *      **  *   * 

consensus_1523#0      CCAAGCCCTAACCGCAAACTCTGAGCCAAAGCAACGCAAAACCAAGGCAATGAACGGAGC 231
consensus_1523#1      TTGCACTGTAATGGAGTATTGTGA----AGGCAACGACTTGGATTTCTACTTGAAGCAAC 236
                           *  ***  *   * * ***    * ******            * *  * * * *

consensus_1523#0      TGAAAATGATCCCTTTCTAAAACCCACCCTACCTCAGCTACTCACACTAGCAGAGTACCA 291
consensus_1523#1      ATAAGCTTATGTCTGAGAAAGAGGCACGATCAATC-GTCATGCAGATTGTGAATGCTTTA 295
                        **  * **  **    ** *  ***  *   ** *  *  ** * *   *  *    *

consensus_1523#0      CGAG--CAGGAAGAGATCTTTAAACTGCGTCTGGGGCATCTCAAAAAGGAAGAAGCTGAA 349
consensus_1523#1      AAATATCTGAACGAAATC---AAACCCCCCATCATTCATTACGACCTTAAGCCAGGTAAT 352
                        *   * * * ** ***   ****  *   *    ***  * *     *   ** * * 

consensus_1523#0      ATCCAGGCAGAGC-TGGAGCGTC-TGGAGAGGGTGCGCAACCTTC-ACATTCGAGAGCTG 406
consensus_1523#1      ATCTTGTTGGTGAATGGCACGGCATGCGGAGAGATCAAAATCACCGACTTTGGTTTGTCC 412
                      ***  *   * *  ***  ** * **  *** *  *  ** *  * ** ** *   *   

consensus_1523#0      AAGAGAATAAATAATGAAGAC---AGCTCACAATTTAAAGATCATCCAACACTGAATGAG 463
consensus_1523#1      AAAATCATGGATGATGACGACTACGGTGTAGATGGGATGGATCTGACATCACAGGGTGGT 472
                      ** *  **  ** **** ***    *   * *    *  ****   ** *** *  **  

consensus_1523#0      CGA---TATCTGCTCCTCCACCTTCTAGGAAGAGGGGGGTTTAGTGAAGTTTACAAGGCT 520
consensus_1523#1      GGGACTTATTGATACCTCCCCCCTGAATGCTTTGTAGGGGGGAGAGAACCACCAAAGATC 532
                       *    ***     ***** ** *  * *    *  ***   ** ***      ***   

consensus_1523#0      TTTGACTTGATTGAACAACGATATGCTGCTGTGAAAGTCCACCAACTTAACAAGAATCGG 580
consensus_1523#1      TCCAACAAGGTGGATGTTTGGTCTGTTGGCGTTATTGTCCTCCAGCGT--------CTGG 584
                      *   **  * * **     * * ** **  ** *  **** *** * *          **

consensus_1523#0      AGGGAGGAGAAGAAAGAAAACTATCACAAACATGCA 616
consensus_1523#1      ATGCAAGAAAACCTGGTGGCCAG------------- 607
                      * * * ** **    *    *               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)